Challenges in data-based geospatial modeling for environmental research and practice

With the rise of electronic data, particularly Earth observation data, data-based geospatial modelling using machine learning (ML) has gained popularity in environmental research. Accurate geospatial predictions are vital for domain research based on ecosystem monitoring and quality assessment and for policy-making and action planning, considering effective management of natural resources. The accuracy and computation speed of ML has generally proved efficient. However, many questions have yet to be addressed to obtain precise and reproducible results suitable for further use in both research and practice. A better understanding of the ML concepts applicable to geospatial problems enhances the development of data science tools providing transparent information crucial for making decisions on global challenges such as biosphere degradation and climate change. This survey reviews common nuances in geospatial modelling, such as imbalanced data, spatial autocorrelation, prediction errors, model generalisation, domain specificity, and uncertainty estimation. We provide an overview of techniques and popular programming tools to overcome or account for the challenges. We also discuss prospects for geospatial Artificial Intelligence in environmental applications

Development of Circumventricular Organs in the Mirror of Zebrafish Enhancer-Trap Transgenics

The circumventricular organs (CVOs) are small structures lining the cavities of brain ventricular system. They are associated with the semitransparent regions of the blood-brain barrier (BBB). Hence it is thought that CVOs mediate biochemical signaling and cell exchange between the brain and systemic blood. Their classification is still controversial and development not fully understood largely due to an absence of tissue-specific molecular markers. In a search for molecular determinants of CVOs we studied the green fluorescent protein (GFP) expression pattern in several zebrafish enhancer trap transgenics including Gateways (ET33-E20) that has been instrumental in defining the development of choroid plexus. In Gateways the GFP is expressed in regions of the developing brain outside the choroid plexus, which remain to be characterized. The neuroanatomical and histological analysis suggested that some previously unassigned domains of GFP expression may correspond to at least six other CVOs–the organum vasculosum laminae terminalis (OVLT), subfornical organ (SFO), paraventricular organ (PVO), pineal (epiphysis), area postrema (AP) and median eminence (ME). Two other CVOs, parapineal and subcommissural organ (SCO) were detected in other enhancer-trap transgenics. Hence enhancer-trap transgenic lines could be instrumental for developmental studies of CVOs in zebrafish and understanding of the molecular mechanism of disease such a hydrocephalus in human. Their future analysis may shed light on general and specific molecular mechanisms that regulate development of CVOs.Sin financiación3.152 JCR (2017) Q1, 2/21 Anatomy & Morphology; Q2 123/261 NeurosciencesUE

Directed Synthesis of Humic and Fulvic Derivatives with Enhanced Antioxidant Properties

Redox moieties, which are present in the molecular backbone of humic substances (HS), govern their antioxidant properties. We hypothesized that a directed modification of the humic backbone via incorporation of redox moieties with known redox properties might provide an efficient tool for tuning up antioxidant properties of HS. In this work, hydroquinonoid and hydronaphthoquinonoid centres were used, which possess very different redox characteristics. They were incorporated into the structure of coal (leonardite) humic acids CHA) and peat fulvic acids (PFA). For this goal, an oxidative copolymerization of phenols was used. The latter was induced via oxidation of hydroquinones and hydroxynapjtaquinones with a use of Fenton’s reagent. The structure of the obtained products was characterized using NMR and FTIR spectroscopy. H/D labelling coupled to FT ICR mass spectrometry analysis was applied for identification of the reaction products as a tool for surmising on reaction mechanism. It was shown that covalent -C-C- bond were formed between the incorporated redox centers and aromatic core of HS. The parent humic acids and their naphthoquinonoid derivatives have demonstrated high accepting capacity. At the same time, fulvic acids and their hydroquinonoid derivatives have possessed both high donor and high antioxidant capacities. The kinetic studies have demonstrated that both humic acids and their derivatives showed much slower kinetics of antioxidant reactions as compared to fulvic acids. The obtained results show, firstly, substantial difference in redox and antioxidant properties of the humic and fulvic acids, and, secondly, they can serve as an experimental evidence that directed chemical modification of humic substances can be used to tune and control antioxidant properties of natural HS

Development of Circumventricular Organs in the Mirror of Zebrafish Enhancer-Trap Transgenics

The circumventricular organs (CVOs) are small structures lining the cavities of brain ventricular system. They are associated with the semitransparent regions of the blood-brain barrier (BBB). Hence it is thought that CVOs mediate biochemical signaling and cell exchange between the brain and systemic blood. Their classification is still controversial and development not fully understood largely due to an absence of tissue-specific molecular markers. In a search for molecular determinants of CVOs we studied the green fluorescent protein (GFP) expression pattern in several zebrafish enhancer trap transgenics including Gateways (ET33-E20) that has been instrumental in defining the development of choroid plexus. In Gateways the GFP is expressed in regions of the developing brain outside the choroid plexus, which remain to be characterized. The neuroanatomical and histological analysis suggested that some previously unassigned domains of GFP expression may correspond to at least six other CVOs–the organum vasculosum laminae terminalis (OVLT), subfornical organ (SFO), paraventricular organ (PVO), pineal (epiphysis), area postrema (AP) and median eminence (ME). Two other CVOs, parapineal and subcommissural organ (SCO) were detected in other enhancer-trap transgenics. Hence enhancer-trap transgenic lines could be instrumental for developmental studies of CVOs in zebrafish and understanding of the molecular mechanism of disease such a hydrocephalus in human. Their future analysis may shed light on general and specific molecular mechanisms that regulate development of CVOs