117 research outputs found
Determining collagen distribution in articular cartilage using contrast-enhanced micro-computed tomography
Objective: Collagen distribution within articular cartilage (AC) is typically evaluated from histological sections, e.g., using collagen staining and light microscopy (LM). Unfortunately, all techniques based on histological sections are time-consuming, destructive, and without extraordinary effort, limited to two dimensions. This study investigates whether phosphotungstic acid (PTA) and phosphomolybdic acid (PMA), two collagen-specific markers and X-ray absorbers, could (1) produce contrast for AC X-ray imaging or (2) be used to detect collagen distribution within AC. Method: We labeled equine AC samples with PTA or PMA and imaged them with micro-computed tomography (micro-CT) at pre-defined time points 0, 18, 36, 54, 72, 90, 180, 270 h during staining. The micro-CT image intensity was compared with collagen distributions obtained with a reference technique, i.e., Fourier-transform infrared imaging (FTIRI). The labeling time and contrast agent producing highest association (Pearson correlation, BlandeAltman analysis) between FTIRI collagen distribution and micro-CT -determined PTA distribution was selected for human AC. Results: Both, PTA and PMA labeling permitted visualization of AC features using micro-CT in non-calcified cartilage. After labeling the samples for 36 h in PTA, the spatial distribution of X-ray attenuation correlated highly with the collagen distribution determined by FTIRI in both equine (mean +/- S.D. of the Pearson correlation coefficients, r = 0.96 +/- 0.03, n = 12) and human AC (r = 0.82 +/- 0.15, n = 4). Conclusions: PTA-induced X-ray attenuation is a potential marker for non-destructive detection of AC collagen distributions in 3D. This approach opens new possibilities in development of non-destructive 3D histopathological techniques for characterization of OA. (C) 2015 The Authors. Published by Elsevier Ltd and Osteoarthritis Research Society International.Peer reviewe
Laboratory-based surveillance of COVID-19 in the Greater Helsinki area, Finland, February-June 2020
Objectives: The aim was to characterise age-and sex-specific severe acute respiratory syndrome coronavirus disease-2 (SARS-CoV-2) RT-PCR sampling frequency and positivity rate in Greater Helsinki area in Finland during February & ndash;June 2020. We also describe the laboratory capacity building for these diagnostics. Methods: Laboratory registry data for altogether 80,791 specimens from 70,517 individuals was analysed. The data included the date of sampling, sex, age and the SARS-CoV-2 RT-PCR test result on specimens collected between 1 February and 15 June 2020. Results: Altogether, 4057/80,791 (5.0%) of the specimens were positive and 3915/70,517 (5.6%) of the individuals were found positive. In all, 37% of specimens were from male and 67% from female subjects. While the number of positive cases was similar in male and female subjects, the positivity rate was significantly higher in male subjects: 7.5% of male and 4.4% of female subjects tested positive. The highest incidence/100,000 was observed in those aged >80 years. The proportion of young adults in positive cases increased in late May 2020. Large dips in testing frequency were observed during every weekend and also during public holidays. Conclusions: Our data suggest that men pursue SARS-CoV-2 testing less frequently than women. Consequently, a subset of coronavirus disease-2019 infections in men may have gone undetected. People sought testing less frequently on weekends and public holidays, and this may also lead to missing of positive cases. The proportion of young adults in positive cases increased towards the end of the study period, which may suggest their returning back to social behaviour with an increased risk of infection. (c) 2020 The Author(s). Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-ncnd/4.0/).Peer reviewe
Vertical profiles of volatile organic compounds and fine particles in atmospheric air by using an aerial drone with miniaturized samplers and portable devices
The increase in volatile organic compound (VOC) emissions
released into the atmosphere is one of the main threats to human health and
climate. VOCs can adversely affect human life through their contribution to
air pollution directly and indirectly by reacting via several mechanisms in
the air to form secondary organic aerosols. In this study, an aerial drone
equipped with miniaturized air-sampling systems including up to four
solid-phase microextraction (SPME) Arrows and four in-tube extraction (ITEX)
samplers for the collection of VOCs, along with portable devices for the
real-time measurement of black carbon (BC) and total particle numbers at
high altitudes was exploited. In total, 135 air samples were collected under
optimal sampling conditions from 4 to 14 October 2021 at the boreal
forest SMEAR II station, Finland. A total of 48 different VOCs, including
nitrogen-containing compounds, alcohols, aldehydes, ketones, organic acids,
and hydrocarbons, were detected at different altitudes from 50 to 400 m
above ground level with concentrations of up to 6898 ng m−3 in the gas
phase and 8613 ng m−3 in the particle phase. Clear differences in VOC
distributions were seen in samples collected from different altitudes,
depending on the VOC sources. It was also possible to collect aerosol
particles by the filter accessory attached on the ITEX sampling system, and
five dicarboxylic acids were quantified with concentrations of 0.43 to
10.9 µg m−3. BC and total particle number measurements
provided similar diurnal patterns, indicating their correlation. For spatial
distribution, BC concentrations were increased at higher altitudes, being
2278 ng m−3 at 100 m and 3909 ng m−3 at 400 m. The measurements
aboard the drone provided insights into horizontal and vertical variability
in BC and aerosol number concentrations above the boreal forest.</p
Efflux Protein Expression in Human Stem Cell-Derived Retinal Pigment Epithelial Cells
Retinal pigment epithelial (RPE) cells in the back of the eye nourish photoreceptor cells and form a selective barrier that influences drug transport from the blood to the photoreceptor cells. At the molecular level, ATP-dependent efflux transporters have a major role in drug delivery in human RPE. In this study, we assessed the relative expression of several ATP-dependent efflux transporter genes (MRP1, -2, -3, -4, -5, -6, p-gp, and BCRP), the protein expression and localization of MRP1, MRP4, and MRP5, and the functionality of MRP1 efflux pumps at different maturation stages of undifferentiated human embryonic stem cells (hESC) and RPE derived from the hESC (hESC-RPE). Our findings revealed that the gene expression of ATP-dependent efflux transporters MRP1, -3, -4, -5, and p-gp fluctuated during hESC-RPE maturation from undifferentiated hESC to fusiform, epithelioid, and finally to cobblestone hESC-RPE. Epithelioid hESC-RPE had the highest expression of MRP1, -3, -4, and P-gp, whereas the most mature cobblestone hESC-RPE had the highest expression of MRP5 and MRP6. These findings indicate that a similar efflux protein profile is shared between hESC-RPE and the human RPE cell line, ARPE-19, and suggest that hESC-RPE cells are suitable in vitro RPE models for drug transport studies. Embryonic stem cell model might provide a novel tool to study retinal cell differentiation, mechanisms of RPE -derived diseases, drug testing and targeted drug therapy
A Combined Synthetic-Fibrin Scaffold Supports Growth and Cardiomyogenic Commitment of Human Placental Derived Stem Cells
Aims: A potential therapy for myocardial infarction is to deliver isolated stem cells to the infarcted site. A key issue with this therapy is to have at one\u27s disposal a suitable cell delivery system which, besides being able to support cell proliferation and differentiation, may also provide handling and elastic properties which do not affect cardiac contractile function. In this study an elastic scaffold, obtained combining a poly(ether)urethane-polydimethylsiloxane (PEtU-PDMS) semi-interpenetrating polymeric network (s-IPN) with fibrin, was used as a substrate for in vitro studies of human amniotic mesenchymal stromal cells (hAMSC) growth and differentiation. Methodology/Principal Findings: After hAMSC seeding on the fibrin side of the scaffold, cell metabolic activity and proliferation were evaluated by WST-1 and bromodeoxyuridine assays. Morphological changes and mRNAs expression for cardiac differentiation markers in the hAMSCs were examined using immunofluorescence and RT-PCR analysis. The beginning of cardiomyogenic commitment of hAMSCs grown on the scaffold was induced, for the first time in this cell population, by a nitric oxide (NO) treatment. Following NO treatment hAMSCs show morphological changes, an increase of the messenger cardiac differentiation markers [troponin I (TnI) and NK2 transcription factor related locus 5 (Nkx2.5)] and a modulation of the endothelial markers [vascular endothelial growth factor (VEGF) and kinase insert domain receptor (KDR)]. Conclusions/Significance: The results of this study suggest that the s-IPN PEtU-PDMS/fibrin combined scaffold allows a better proliferation and metabolic activity of hAMSCs cultured up to 14 days, compared to the ones grown on plastic dishes. In addition, the combined scaffold sustains the beginning of hAMSCs differentiation process towards a cardiomyogenic lineage
Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds
Screening ethnically diverse human embryonic stem cells identifies a chromosome 20 minimal amplicon conferring growth advantage
The International Stem Cell Initiative analyzed 125 human embryonic stem (ES) cell lines and 11 induced pluripotent stem (iPS) cell lines, from 38 laboratories worldwide, for genetic changes occurring during culture. Most lines were analyzed at an early and late passage. Single-nucleotide polymorphism (SNP) analysis revealed that they included representatives of most major ethnic groups. Most lines remained karyotypically normal, but there was a progressive tendency to acquire changes on prolonged culture, commonly affecting chromosomes 1, 12, 17 and 20. DNA methylation patterns changed haphazardly with no link to time in culture. Structural variants, determined from the SNP arrays, also appeared sporadically. No common variants related to culture were observed on chromosomes 1, 12 and 17, but a minimal amplicon in chromosome 20q11.21, including three genes expressed in human ES cells, ID1, BCL2L1 and HM13, occurred in >20% of the lines. Of these genes, BCL2L1 is a strong candidate for driving culture adaptation of ES cells
Bottom trawl fishing footprints on the world’s continental shelves
Publication history: Accepted - 23 August 2018; Published online - 8 October 2018.Bottom trawlers land around 19 million tons of fish and invertebrates
annually, almost one-quarter of wild marine landings. The extent of
bottom trawling footprint (seabed area trawled at least once in a
specified region and time period) is often contested but poorly
described. We quantify footprints using high-resolution satellite vessel
monitoring system (VMS) and logbook data on 24 continental shelves
and slopes to 1,000-m depth over at least 2 years. Trawling footprint
varied markedly among regions: from <10% of seabed area in Australian
and New Zealand waters, the Aleutian Islands, East Bering Sea,
South Chile, and Gulf of Alaska to >50% in some European seas.
Overall, 14% of the 7.8 million-km2 study area was trawled, and
86% was not trawled. Trawling activity was aggregated; the most
intensively trawled areas accounting for 90% of activity comprised
77% of footprint on average. Regional swept area ratio (SAR; ratio
of total swept area trawled annually to total area of region, a metric
of trawling intensity) and footprint area were related, providing an
approach to estimate regional trawling footprints when highresolution
spatial data are unavailable. If SAR was ≤0.1, as in 8 of
24 regions, therewas >95% probability that >90%of seabed was not
trawled. If SAR was 7.9, equal to the highest SAR recorded, there
was >95% probability that >70% of seabed was trawled. Footprints
were smaller and SAR was ≤0.25 in regions where fishing rates consistently
met international sustainability benchmarks for fish stocks,
implying collateral environmental benefits from sustainable fishing.Funding for meetings of the study group and salary
support for R.O.A. were provided by the following: David and Lucile Packard
Foundation; the Walton Family Foundation; the Alaska Seafood Cooperative;
American Seafoods Group US; Blumar Seafoods Denmark; Clearwater Seafoods
Inc.; Espersen Group; Glacier Fish Company LLC US; Gortons Seafood; Independent
Fisheries Limited N.Z.; Nippon Suisan (USA), Inc.; Pesca Chile S.A.;
Pacific Andes International Holdings, Ltd.; San Arawa, S.A.; Sanford Ltd. N.Z.;
Sealord Group Ltd. N.Z.; South African Trawling Association; Trident Seafoods;
and the Food and Agriculture Organisation of the United Nations. Additional
funding to individual authors was provided by European Union Project
BENTHIS EU-FP7 312088 (to A.D.R., O.R.E., F.B., N.T.H., L.B.-M., R.C., H.O.F.,
H.G., J.G.H., P.J., S.K., M.L., G.G.-M., N.P., P.E.P., T.R., A.S., B.V., and M.J.K.); the
Instituto Português do Mar e da Atmosfera, Portugal (C.S.); the International
Council for the Exploration of the Sea Science Fund (R.O.A. and K.M.H.); the
Commonwealth Scientific and Industrial Research Organisation (C.R.P. and
T.M.); the National Oceanic and Atmospheric Administration (R.A.M.); New
Zealand Ministry for Primary Industries Projects BEN2012/01 and DAE2010/
04D (to S.J.B. and R.F.); the Institute for Marine and Antarctic Studies, University
of Tasmania and the Department of Primary Industries, Parks, Water and
Environment, Tasmania, Australia (J.M.S.); and UK Department of Environment,
Food and Rural Affairs Project MF1225 (to S.J.)
Environmental and anthropogenic factors affecting the probability of occurrence of Oncomegas wageneri (Cestoda: Trypanorhyncha) in the southern Gulf of Mexico
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