Why Don't Women Patent?

We investigate women's underrepresentation among holders of commercialized patents: only 5.5% of holders of such patents are female. Using the National Survey of College Graduates 2003, we find only 7% of the gap is accounted for by women's lower probability of holding any science or engineering degree, because women with such a degree are scarcely more likely to patent than women without. Differences among those without a science or engineering degree account for 15%, while 78% is accounted for by differences among those with a science or engineering degree. For the latter group, we find that women's underrepresentation in engineering and in jobs involving development and design explain much of the gap; closing it would increase U.S. GDP per capita by 2.7%.

Giant pop-ins and amorphization in germanium during indentation

Sudden excursions of unusually large magnitude (>1 μm), “giant pop-ins,” have been observed in the force-displacement curve for high load indentation of crystalline germanium(Ge). A range of techniques including Raman microspectroscopy, focused ion-beam cross sectioning, and transmission electron microscopy, are applied to study this phenomenon. Amorphous material is observed in residual indents following the giant pop-in. The giant pop-in is shown to be a material removal event, triggered by the development of shallow lateral cracks adjacent to the indent. Enhanced depth recovery, or “elbowing,” observed in the force-displacement curve following the giant pop-in is explained in terms of a compliant response of plates of material around the indent detached by lateral cracking. The possible causes of amorphization are discussed, and the implications in light of earlier indentation studies of Ge are considered

Looking for Cancer Clues in Publicly Accessible Databases

What started out as a mere attempt to tentatively identify proteins in experimental cancer-related 2D-PAGE maps developed into VIRTUAL2D, a web-accessible repository for theoretical pI/MW charts for 92 organisms. Using publicly available expression data, we developed a collection of tissue-specific plots based on differential gene expression between normal and diseased states. We use this comparative cancer proteomics knowledge base, known as the tissue molecular anatomy project (TMAP), to uncover threads of cancer markers common to several types of cancer and to relate this information to established biological pathways

Heat flow in the Western Arctic Ocean (Amerasian Basin)

Author Posting. © American Geophysical Union, 2019. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research-Solid Earth 124(8), (2019): 7562-7587, doi: 10.1029/2019JB017587.From 1963 to 1973 the U.S. Geological Survey measured heat flow at 356 sites in the Amerasian Basin (Western Arctic Ocean) from a drifting ice island (T‐3). The resulting measurements, which are unevenly distributed on Alpha‐Mendeleev Ridge and in Canada and Nautilus Basins, greatly expand available heat flow data for the Arctic Ocean. Average T‐3 heat flow is ~54.7 ± 11.3 mW/m2, and Nautilus Basin is the only well‐surveyed area (~13% of data) with significantly higher average heat flow (63.8 mW/m2). Heat flow and bathymetry are not correlated at a large scale, and turbiditic surficial sediments (Canada and Nautilus Basins) have higher heat flow than the sediments that blanket the Alpha‐Mendeleev Ridge. Thermal gradients are mostly near‐linear, implying that conductive heat transport dominates and that near‐seafloor sediments are in thermal equilibrium with overlying bottom waters. Combining the heat flow data with modern seismic imagery suggests that some of the observed heat flow variability may be explained by local changes in lithology or the presence of basement faults that channel circulating seawater. A numerical model that incorporates thermal conductivity variations along a profile from Canada Basin (thick sediment on mostly oceanic crust) to Alpha Ridge (thin sediment over thick magmatic units associated with the High Arctic Large Igneous Province) predicts heat flow slightly lower than that observed on Alpha Ridge. This, along with other observations, implies that circulating fluids modulate conductive heat flow and contribute to high variability in the T‐3 data set.B.V. Marshall of the U.S. Geological Survey (USGS) was critical to the T‐3 heat flow studies and would have been included as a coauthor on this work if he were not deceased. The original T‐3 heat flow data acquisition program was supported by the USGS and by the Naval Arctic Research Laboratory of the Office of Naval Research. Over the decade of USGS research on T‐3 Ice Island, numerous researchers and technical staff, including B.V. Marshall, P. Twichell, D. Scoboria, J. Tailleur, B. Tailleur, and others, spent months on the island and endured difficult and sometimes dangerous conditions to acquire this data set alongside colleagues from other institutions. Outstanding support from the USGS Menlo Park office, transportation and logistics assistance from other U.S. federal government agencies, Arctic expertise supplied by native Alaskan communities, and collaboration with Lamont researchers made this research program possible. B. Lachenbruch and L. Lawver revived interest in this data set in 2016, and they, along with D. Darby and J. K. Hall, provided ancillary information on T‐3 studies. B. Clarke and M. Arsenault assisted with initial data digitization. We thank M. Jakobsson, R. Saltus, and G. Oakey for providing critical shapefiles and other data and R. Jackson and S. Mukasa for clarification on unpublished information. Reviews by J. Hopper, P. Hart, and W. Jokat improved the manuscript, and V. Atnipp Cross and A. Babb were instrumental in completion of data releases. The USGS's Coastal/Marine Hazards and Resources Program supported C.R. and D.H. between 2016 and 2019, and C.R. used office space provided by the Earth Resources Laboratory at the Massachusetts Institute of Technology during completion of this work. Data in Figure 11 were provided by the U.S. Extended Continental Shelf (ECS) Project. The opinions, findings, and conclusions stated herein are those of the authors and the U.S. Geological Survey, but do not necessarily reflect those of the U.S. ECS Project. Any use of trade, firm, or product name is for descriptive purposes only and does not imply endorsement by the U.S. Government. Digital data, metadata, and supporting plots for T‐3 heat flow, navigation, and radiogenic heat content, along with Lamont gravity and magnetics data, are available from Ruppel et al. (2019), and the original T‐3 expedition report with explanatory metadata can be downloaded from Lachenbruch et al. (2019)

Tumor and reproductive traits are linked by RNA metabolism genes in the mouse ovary: a transcriptome-phenotype association analysis

Background: The link between reproductive life history and incidence of ovarian tumors is well known. Periods of reduced ovulations may confer protection against ovarian cancer. Using phenotypic data available for mouse, a possible association between the ovarian transcriptome, reproductive records and spontaneous ovarian tumor rates was investigated in four mouse inbred strains. NIA15k-DNA microarrays were employed to obtain expression profiles of BalbC, C57BL6, FVB and SWR adult ovaries.Results: Linear regression analysis with multiple-test control (adjusted p ≤ 0.05) resulted in ovarian tumor frequency (OTF) and number of litters (NL) as the top-correlated among five tested phenotypes. Moreover, nearly one-hundred genes were coincident between these two traits and were decomposed in 76 OTF(-) NL(+) and 20 OTF(+) NL(-) genes, where the plus/minus signs indicate the direction of correlation. Enriched functional categories were RNA-binding/mRNA-processing and protein folding in the OT

Three microarray platforms: an analysis of their concordance in profiling gene expression

BACKGROUND: Microarrays for the analysis of gene expression are of three different types: short oligonucleotide (25–30 base), long oligonucleotide (50–80 base), and cDNA (highly variable in length). The short oligonucleotide and cDNA arrays have been the mainstay of expression analysis to date, but long oligonucleotide platforms are gaining in popularity and will probably replace cDNA arrays. As part of a validation study for the long oligonucleotide arrays, we compared and contrasted expression profiles from the three formats, testing RNA from six different cell lines against a universal reference standard. RESULTS: The three platforms had 6430 genes in common. In general, correlation of gene expression levels across the platforms was good when defined by concordance in the direction of expression difference (upregulation or downregulation), scatter plot analysis, principal component analysis, cell line correlation or quantitative RT-PCR. The overall correlations (r values) between platforms were in the range 0.7 to 0.8, as determined by analysis of scatter plots. When concordance was measured for expression ratios significant at p-values of <0.05 and at expression threshold levels of 1.5 and 2-fold, the agreement among the platforms was very high, ranging from 93% to 100%. CONCLUSION: Our results indicate that the long oligonucleotide platform is highly suitable for expression analysis and compares favorably with the cDNA and short oligonucleotide varieties. All three platforms can give similar and reproducible results if the criterion is the direction of change in gene expression and minimal emphasis is placed on the magnitude of change

Endometrial gene expression reveals compromised progesterone signaling in women refractory to embryo implantation

© 2014 Tapia-Pizarro et al.; licensee BioMed Central Ltd.Background: Endometrial function is essential for embryo implantation. The aim of this study was to analyze gene expression profiles from individual endometrial samples obtained from women with repeated implantation failure after IVF in oocyte donation programs. Methods: Seventeen volunteers were recruited: women who had previously participated as recipients in oocyte donation cycles and repeatedly exhibited implantation failure (Group A, study group, n = 5) or had at least one successful cycle (Group B, control group, n = 6) and spontaneously fertile women (Group C, normal fertility group, n = 6). An endometrial cycle was induced with exogenous estradiol (E2) and progesterone (P) and an endometrial sample was collected on the seventh day of P treatment. Results: Transcriptome analysis showed 82 genes with consistent differential gene expression when comparing A vs. B and A vs. C. One hundred transcripts differentially expresse

Magnetic field processing to enhance critical current densities of MgB2 superconductors

A magnetic field of up to 12T was applied during the sintering process of pure MgB2 and carbon nanotube(CNT)dopedMgB2wires. The authors have demonstrated that magnetic field processing results in grain refinement, homogeneity, and enhancement in Jc(H) and Hirr. The extent of improvement in Jc increases with increasing field. The Jc for a 10T field processed CNTdoped sample increases by a factor of 3 at 10K and 8T and at 20K and 5T, respectively. Hirr for the 10T field processed CNTdoped sample reached 9T at 20K, which exceeded the best value of SiC dopedMgB2 at 20K. Magnetic field processing reduces the resistivity in CNTdopedMgB2, straightens the entangled CNTs, and improves the adherence between CNTs and the MgB2 matrix

The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric Traits

PMCID: PMC3410907This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited

Protein Microarray On-Demand: A Novel Protein Microarray System

We describe a novel, simple and low-cost protein microarray strategy wherein the microarrays are generated by printing expression ready plasmid DNAs onto slides that can be converted into protein arrays on-demand. The printed expression plasmids serve dual purposes as they not only direct the synthesis of the protein of interest; they also serve to capture the newly synthesized proteins through a high affinity DNA-protein interaction. To accomplish this we have exploited the high-affinity binding (∼3–7×10 −13 M) of E. coli Tus protein to Ter, a 20 bp DNA sequence involved in the regulation of E. coli DNA replication. In our system, each protein of interest is synthesized as a Tus fusion protein and each expression construct directing the protein synthesis contains embedded Ter DNA sequence. The embedded Ter sequence functions as a capture reagent for the newly synthesized Tus fusion protein. This “all DNA” microarray can be converted to a protein microarray on-demand without need for any additional capture reagent.