50 research outputs found
Relationship between GC content and intron size.
<p>GC contents in three size intervals from the three populations (DAF <0.1): YRI (A), CEU (B), and JPTCHB (C) as well as the combined data (all introns; D). The horizontal lines in the boxplots indicate the upper, the median, and the lower quartiles (from the top to the bottom).</p
RDI (DAF<0.1) when examining dependence of GC-effect on intron length.
<p>RDI (DAF<0.1) when examining dependence of GC-effect on intron length.</p
RDI (DAF<0.1) in different intron size intervals from combined datasets of the three populations.
<p>RDI (DAF<0.1) in different intron size intervals from combined datasets of the three populations.</p
RDI (DAF<0.1) under variable size intervals and GC-contents.
<p>RDI (DAF<0.1) under variable size intervals and GC-contents.</p
Median GC contents in variable intron size intervals and regions.
<p>*We pooled both 5′-exon and 3′-exon data as flanking exon data and compared them with intron data. The <i>P</i> values were calculated based on Wilcoxon rank sum test.</p
Estimation of key parameters.
<p>The distributions of derived allele frequency or DAF (A) and GC content (B) of minimal introns among the three studied populations: Africans (YRI), Europeans (CEU), and Asians (JPTCHB). The dashed lines divide the thresholds for DAF (A) and intron GC content (B).</p
High and Selective Carbon Dioxide Capture in Nitrogen-Containing Aerogels via Synergistic Effects of Electrostatic In-Plane and Dispersive π–π-Stacking Interactions
A new strategy for
CO<sub>2</sub> capture is reported based on the synergistic effect
of electrostatic in-plane and dispersive π–π-stacking
interactions of amide and indole with CO<sub>2</sub>. Density functional
theory illustrated that the amide group can have an increased ability
to capture CO<sub>2</sub> molecules that were just desorbed from an
adjacent indole unit. We used this strategy to fabricate a microporous
aerogel that exhibited a superior CO<sub>2</sub> capture performance
in both dry and wet conditions. The proposed synergistic effect is
expected to be a new rationale for the design of CO<sub>2</sub> capture
materials
Dynamic Molecular Behavior on Thermoresponsive Polymer Brushes
The surface dynamics of individual
surfactant and polymer molecules
on thermally responsive polymer brushes (polyÂ(<i>N</i>-isopropylacrylamide),
PNIPAAM) were studied using high throughput single molecule tracking
microscopy. The probe molecules universally exhibited intermittent
hopping motion, in which the diffusion switched between mobility and
confinement with a broad distribution of waiting times; this was analyzed
in the context of a continuous time random walk (CTRW) model described
using “waiting time” and “flight length”
distributions. We found that the surface mobility, which was affected
by waiting times and flight lengths, of both probe molecules increased
abruptly with temperature above the 32 °C lower critical solution
temperature (LCST) transition of the PNIPAAM brush. In particular,
above the LCST, where the polymer brush collapsed into a more hydrophobic
dense polymer film, the effective diffusion coefficients and mobile
fraction of probe molecule increased, suggesting that mobility was
inhibited by penetration into the brush at lower temperatures. Waiting
times at lower temperature were twice as long as at higher temperatures,
and the longest flight length increased from 0.9 to 1.8 ÎĽm.
Moreover, we found that the high density of strong binding sites available
on the swollen PNIPAAM brush led to long waiting times and a high
probability of readsorption, which resulted in short flight lengths,
while the absence of strong binding sites on collapsed PNIPAAM films
led to short waiting times and long flights
Nanoscale Topography Influences Polymer Surface Diffusion
Using high-throughput single-molecule tracking, we studied the diffusion of poly(ethylene glycol) chains at the interface between water and a hydrophobic surface patterned with an array of hexagonally arranged nanopillars. Polymer molecules displayed anomalous diffusion; in particular, they exhibited intermittent motion (<i>i.e.</i>, immobilization and “hopping”) suggestive of continuous-time random walk (CTRW) behavior associated with desorption-mediated surface diffusion. The statistics of the molecular trajectories changed systematically on surfaces with pillars of increasing height, exhibiting motion that was increasingly subdiffusive and with longer waiting times between diffusive steps. The trajectories were well-described by kinetic Monte Carlo simulations of CTRW motion in the presence of randomly distributed permeable obstacles, where the permeability (the main undetermined parameter) was conceptually related to the obstacle height. These findings provide new insights into the mechanisms of interfacial transport in the presence of obstacles and on nanotopographically patterned surfaces
Temporally Anticorrelated Motion of Nanoparticles at a Liquid Interface
Quantum dots at the hexane–glycerol
interface exhibited
unexpected behavior including highly dynamic adsorption/desorption,
where the lateral nanoparticle motion was anomalously fast immediately
after adsorption and prior to desorption. At the interface, particles
exhibited pseudo-Brownian lateral motion, in which the instantaneous
diffusion coefficient was temporally anticorrelated, in agreement
with our simulations involving fractional Brownian motion in the surface-normal
direction. These phenomena suggest that, in contrast to the conventional
picture for colloidal particles, nanoparticles explore a landscape
of metastable interfacial positions, with different exposures to the
two adjacent phases