Particle mesh simulations of the Lyman-alpha forest and the signature of Baryon Acoustic Oscillations in the intergalactic medium

We present a set of ultra-large particle-mesh simulations of the LyA forest targeted at understanding the imprint of baryon acoustic oscillations (BAO) in the inter-galactic medium. We use 9 dark matter only simulations which can, for the first time, simultaneously resolve the Jeans scale of the intergalactic gas while covering the large volumes required to adequately sample the acoustic feature. Mock absorption spectra are generated using the fluctuating Gunn-Peterson approximation which have approximately correct flux probability density functions (PDFs) and small-scale power spectra. On larger scales there is clear evidence in the redshift space correlation function for an acoustic feature, which matches a linear theory template with constant bias. These spectra, which we make publicly available, can be used to test pipelines, plan future experiments and model various physical effects. As an illustration we discuss the basic properties of the acoustic signal in the forest, the scaling of errors with noise and source number density, modified statistics to treat mean flux evolution and misestimation, and non-gravitational sources such as fluctuations in the photo-ionizing background and temperature fluctuations due to HeII reionization.Comment: 11 pages, 10 figures, minor changes to address referee repor

Do wildlife warning reflectors elicit aversion in captive macropods?

A goal to reduce the frequency of animal-vehicle collisions is motivating extensive research on this topic world-wide. Over the last 30 years, one popular mechanism to warn wildlife of approaching vehicles has been the wildlife warning reflector, manufactured and distributed under the brands Swareflex (Austria) and Strieter-Lite (USA). These reflectors were designed to scare deer and other ungulates from roadways at night by reflecting light from the headlights of approaching vehicles into the eyes of animals on the road verge. Robust documentation of their effectiveness has been lacking, yet there has been a push in Australia to examine their efficacy with regard to medium to large macropodids. Field trials of the reflectors are problematic and difficult to design rigorously, so we chose to examine the behavioural response of two captive macropodid species (Macropus rufus and M. rufogriseus) to the reflectors on a simulated road in order to derive some indication as to their efficacy. The behavioural response to the reflectors was negligible for both species and not consistent with an aversive effect to deter road use or crossing. We conclude that they would be of little value in our efforts to reduce the frequency of collisions of kangaroos or wallabies with vehicles in Australia. © CSIRO 2006

Frequency and causes of kangaroo-vehicle collisions on an Australian outback highway

Kangaroo-vehicle collisions are frequent on Australian highways. Despite high economic costs, detrimental effects on animal welfare, and potential impacts on population viability, little research has been done to investigate the impact of road mortality on kangaroo populations, where and why accidents occur, and how the collisions can be mitigated. We therefore collected data on species (Macropus rufus, M. giganteus, M. fuliginosus, M. robustus), sex and age of kangaroos killed on a 21.2-km bitumenised section of outback highway over 6 months in far western New South Wales, Australia. The spatial and temporal distribution of road-killed kangaroos was investigated in relation to the cover and quality of road-side vegetation, road characteristics, the density of kangaroos along the road, climatic variables and traffic volume. A total of 125 kangaroos were found killed on the road at a rate of 0.03 deaths km-1 day-1. Grey kangaroos of two species (M. giganteus, M. fuliginosus) were under-represented in the road-kill sample in comparison with their proportion in the source population estimated during the day. No bias towards either sex was found. The age structure of road-killed kangaroos was similar to age structures typical of source kangaroo populations. Road-kills mainly occurred in open plains country. In road sections with curves or stock races, road-kill frequencies were higher than expected. Greater cover and greenness of roadside vegetation at the verge probably attracted kangaroos to the road and variation in this vegetation affected the spatial distribution of road-kills. The temporal distribution of road-kills was positively correlated with the volume of night-time traffic. The probability of a kangaroo-vehicle collision increased exponentially with traffic volume. Results are discussed in relation to the potential for mitigation of kangaroo-vehicle collisions. © CSIRO 2006

Perspective: Is It Time for Advocacy Training in Medical Education?

As the modern medical system becomes increasingly complex, a debate has arisen over the place of advocacy efforts within the medical profession. The authors argue that advocacy can help physicians fulfill their social contract. For physicians to become competent in patient-centered, clinical, administrative, or legislative advocacy, they require professional training. Many professional organizations have called for curricular reform to meet society's health needs during the past 30 years, and the inclusion of advocacy training in undergraduate, graduate, and continuing medical education is supported on both pragmatic and ethical grounds. Undergraduate medical education, especially, is an ideal time for this training because a standard competency can be instilled across all specialties. Although the Accreditation Council for Graduate Medical Education includes advocacy training in curricula for residency programs, few medical schools or residency programs have advocacy electives. By understanding the challenges of the health care system and how to change it for the better, physicians can experience increased professional satisfaction and effectiveness in improving patient care, systems-based practice, and public health

Seeking the Local Convergence Depth. V. Tully-Fisher Peculiar Velocities for 52 Abell Clusters

We have obtained I band Tully-Fisher (TF) measurements for 522 late-type galaxies in the fields of 52 rich Abell clusters distributed throughout the sky between 50 and 200\h Mpc. Here we estimate corrections to the data for various forms of observational bias, most notably Malmquist and cluster population incompleteness bias. The bias-corrected data are applied to the construction of an I band TF template, resulting in a relation with a dispersion of 0.38 magnitudes and a kinematical zero-point accurate to 0.02 magnitudes. This represents the most accurate TF template relation currently available. Individual cluster TF relations are referred to the average template relation to compute cluster peculiar motions. The line-of-sight dispersion in the peculiar motions is 341+/-93 km/s, in general agreement with that found for the cluster sample of Giovanelli and coworkers.Comment: 31 pages, 14 figures, uses AAS LaTeX; to appear in the Astronomical Journa

Structural diversity in the AdoMet radical enzyme superfamily

AdoMet radical enzymes are involved in processes such as cofactor biosynthesis, anaerobic metabolism, and natural product biosynthesis. These enzymes utilize the reductive cleavage of S-adenosylmethionine (AdoMet) to afford l-methionine and a transient 5′-deoxyadenosyl radical, which subsequently generates a substrate radical species. By harnessing radical reactivity, the AdoMet radical enzyme superfamily is responsible for an incredible diversity of chemical transformations. Structural analysis reveals that family members adopt a full or partial Triose-phosphate Isomerase Mutase (TIM) barrel protein fold, containing core motifs responsible for binding a catalytic [4Fe–4S] cluster and AdoMet. Here we evaluate over twenty structures of AdoMet radical enzymes and classify them into two categories: ‘traditional’ and ‘ThiC-like’ (named for the structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate synthase (ThiC)). In light of new structural data, we reexamine the ‘traditional’ structural motifs responsible for binding the [4Fe–4S] cluster and AdoMet, and compare and contrast these motifs with the ThiC case. We also review how structural data combine with biochemical, spectroscopic, and computational data to help us understand key features of this enzyme superfamily, such as the energetics, the triggering, and the molecular mechanisms of AdoMet reductive cleavage. This article is part of a Special Issue entitled: Radical SAM Enzymes and Radical Enzymology.Wellcome Trust (London, England) (091162/Z/10/Z)National Science Foundation (U.S.) (NSF Grant MCB-0543833)Howard Hughes Medical Institute (Investigator

Distinguishing Social from Nonsocial Navigation in Moving Animal Groups

Many animals, such as migrating shoals of fish, navigate in groups. Knowing the mechanisms involved in animal navigation is important when it comes to explaining navigation accuracy, dispersal patterns, population and evolutionary dynamics, and consequently, the design of conservation strategies. When navigating toward a common target, animals could interact socially by sharing available information directly or indirectly, or each individual could navigate by itself and aggregations may not disperse because all animals are moving toward the same target. Here we present an analysis technique that uses individual movement trajectories to determine the extent to which individuals in navigating groups interact socially, given knowledge of their target. The basic idea of our approach is that the movement directions of individuals arise from a combination of responses to the environment and to other individuals. We estimate the relative importance of these responses, distinguishing between social and nonsocial interactions. We develop and test our method, using simulated groups, and we demonstrate its applicability to empirical data in a case study on groups of guppies moving toward shelter in a tank. Our approach is generic and can be extended to different scenarios of animal group movement. © 2012 by The University of Chicago