Definissabilite dans les Corps de Fonctions p-Adiques

We study function fields over p-adically closed fields in the first-order language of fields. Using ideas of Duret [D], we show that the field of constants is definable, and that the genus is an elementary property

The Relationship among Gene Expression, the Evolution of Gene Dosage, and the Rate of Protein Evolution

The understanding of selective constraints affecting genes is a major issue in biology. It is well established that gene expression level is a major determinant of the rate of protein evolution, but the reasons for this relationship remain highly debated. Here we demonstrate that gene expression is also a major determinant of the evolution of gene dosage: the rate of gene losses after whole genome duplications in the Paramecium lineage is negatively correlated to the level of gene expression, and this relationship is not a byproduct of other factors known to affect the fate of gene duplicates. This indicates that changes in gene dosage are generally more deleterious for highly expressed genes. This rule also holds for other taxa: in yeast, we find a clear relationship between gene expression level and the fitness impact of reduction in gene dosage. To explain these observations, we propose a model based on the fact that the optimal expression level of a gene corresponds to a trade-off between the benefit and cost of its expression. This COSTEX model predicts that selective pressure against mutations changing gene expression level or affecting the encoded protein should on average be stronger in highly expressed genes and hence that both the frequency of gene loss and the rate of protein evolution should correlate negatively with gene expression. Thus, the COSTEX model provides a simple and common explanation for the general relationship observed between the level of gene expression and the different facets of gene evolution

Scale-up of a novel non-enzymatic cellulose-to-glucose hydrolysis process

The acidic hydrolysis of cellulose to glucose followed by its subsequent fermentation to ethanol has been an intensive research topic over the last decades. On a global scale, cellulosic resources are by far the most promising alternative to first generation starch for bioethanol production. However, such processes are still struggling to reach economy due to the high investment (CAPEX) and operating costs (OPEX) required especially in a market where fossil fuels are so affordable (Feb 2016). Despite the severe restrictions associated with the production of second generation sugars (assuming a target price comparable to sugar at $5.96 USD/kg – Feb. 2016), a patented three-step method developed by the Industrial Research Chair on Cellulosic Ethanol and Biocommodities (CRIEC-B) shows significant potential to counter the classical restrictions associated with such process. The first step of the process is performed in concentrated acidic solution resulting in a decrystallization of the cellulose macromolecule, then the mixture is treated again (post-hydrolysis) at higher temperature allowing conversion of cellulose to glucose. After a patented separation step, the reactants are isolated from the carbohydrates allowing an optimal recuperation of the chemicals used for the reaction. As well, optimization of this process was performed in order to maximize glucose production while minimizing operation as well as fermentation inhibitors. In order to understand the parameters of this process, the decrystallized cellulose was analyzed using XRD and SEM in order to determine the minimum liquid/solid ratio needed for the process. In addition, the post-hydrolysis step was optimized using experimental design in order to maximize glucose yield while minimizing water consumption. After hydrolysis, the glucose solutions were fermented into ethanol at high yield using a commercial grade non-GMO yeast. Hydrolysis was performed on several biomasses such as softwood cellulose and hemp cellulose. Finally, a scaled-up pilot plant based on this process is currently being designed in order to validate the economic viability of this process at larger scale as well as to verify the constraints generated from a scale modification. The targeted pilot facilities will be used for the hydrolysis of cellulose in order to produce a system with a total capacity of 100 000L/y. One of the main challenge of this scale-up is the high corrosiveness of the media associated with the other restrictions and chemicals used in the process as well as the high viscosity occurring when cellulose is originally destructured. In this work, investigations were made in order to find a low cost corrosive and solvent-resistant material that could be used in the temperature range corresponding to the process. The end game will be to validate cost-effective process for the production of second-generation bioethanol from cellulosic resources

O2 contamination in SSC / HIC test environments. Impact on test results and discussion on acceptable limits for high H 2 S content

International audienceIt is a well admitted fact that oxygen contamination shall be avoided during H 2 S cracking tests of low alloy steels. In the 2016 revisions of NACE TM0177 and NACE TM0284 documents, quantitative limits of O 2 contamination were included with thresholds at 10 and 50 ppb of dissolved oxygen depending on the considered mechanical properties of the tested grade. However, the scientific basis of these values are not well established and there is still a lack of experimental data to illustrate the potential impacts of an oxygen pollution. In addition, while the revised test methods explicitly address initial contamination of the test solution before H 2 S introduction, they do not consider a continuous oxygen supply during testing. Yet, continuous contamination is extremely difficult to be completely eliminated. In order to better understand the impact of O 2 contamination on H 2 S cracking, a 3-years Joint Industrial Project was launched at the end of 2015. The objectives were to evaluate if O 2 contamination can affect H 2 S cracking test results. A range of steel grades covering different types of O&G applications for High H 2 S content were used. SSC (uniaxial tensile tests as well as 4 point-bend) and HIC tests were conducted, with well controlled and continuous O 2 contamination. Three levels of O 2 partial pressures in the gas feed corresponding to 300 ppb, 50 ppb and less than 10 ppb dissolved O 2 were used. In parallel to the standard qualification tests, hydrogen permeation and weight-loss corrosion experiments were performed with the same test matrix, covering all regions of the SSC severity diagram. This paper aims at sharing the main results of this project for high H 2 S content

Natural history of the ERVWE1 endogenous retroviral locus

BACKGROUND: The human HERV-W multicopy family includes a unique proviral locus, termed ERVWE1, whose full-length envelope ORF was preserved through evolution by the action of a selective pressure. The encoded Env protein (Syncytin) is involved in hominoid placental physiology. RESULTS: In order to infer the natural history of this domestication process, a comparative genomic analysis of the human 7q21.2 syntenic regions in eutherians was performed. In primates, this region was progressively colonized by LTR-elements, leading to two different evolutionary pathways in Cercopithecidae and Hominidae, a genetic drift versus a domestication, respectively. CONCLUSION: The preservation in Hominoids of a genomic structure consisting in the juxtaposition of a retrotransposon-derived MaLR LTR and the ERVWE1 provirus suggests a functional link between both elements

Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies

In Caenorhabditis elegans, the Mex-3 protein is a translational regulator that specifies the posterior blastomere identity in the early embryo and contributes to the maintenance of the germline totipotency. We have now identified a family of four homologous human Mex-3 genes, called hMex-3A to -3D that encode proteins containing two heterogeneous nuclear ribonucleoprotein K homology (KH) domains and one carboxy-terminal RING finger module. The hMex-3 are phosphoproteins that bind RNA through their KH domains and shuttle between the nucleus and the cytoplasm via the CRM1-dependent export pathway. Our analysis further revealed that hMex-3A and hMex-3B, but not hMex-3C, colocalize with both the hDcp1a decapping factor and Argonaute (Ago) proteins in processing bodies (P bodies), recently characterized as centers of mRNA turnover. Taken together, these findings indicate that hMex-3 proteins constitute a novel family of evolutionarily conserved RNA-binding proteins, differentially recruited to P bodies and potentially involved in post-transcriptional regulatory mechanisms

Databases of homologous gene families for comparative genomics

International audienceBackground: Comparative genomics is a central step in many sequence analysis studies, from gene annotation and the identification of new functional regions in genomes, to the study of evolutionary processes at the molecular level (speciation, single gene or whole genome duplications, etc.) and phylogenetics. In that context, databases providing users high quality homologous families and sequence alignments as well as phylogenetic trees based on state of the art algorithms are becoming indispensable. Methods: We developed an automated procedure allowing massive all-against-all similarity searches, gene clustering, multiple alignments computation, and phylogenetic trees construction and reconciliation. The application of this procedure to a very large set of sequences is possible through parallel computing on a large computer cluster. Results: Three databases were developed using this procedure: HOVERGEN, HOGENOM and HOMOLENS. These databases share the same architecture but differ in their content. HOVERGEN contains sequences from vertebrates, HOGENOM is mainly devoted to completely sequenced microbial organisms, and HOMOLENS is devoted to metazoan genomes from Ensembl. Access to the databases is provided through Web query forms, a general retrieval system and a client-server graphical interface. The later can be used to perform tree-pattern based searches allowing, among other uses, to retrieve sets of orthologous genes. The three databases, as well as the software required to build and query them, can be used or downloaded from the PBIL (Pôle Bioinformatique Lyonnais) site at http://pbil.univ-lyon1.fr/

Tests of achromatic phase shifters performed on the SYNAPSE test bench: a progress report

The achromatic phase shifter (APS) is a component of the Bracewell nulling interferometer studied in preparation for future space missions (viz. Darwin/TPF-I) focusing on spectroscopic study of Earth-like exo-planets. Several possible designs of such an optical subsystem exist. Four approaches were selected for further study. Thales Alenia Space developed a dielectric prism APS. A focus crossing APS prototype was developed by the OCA, Nice, France. A field reversal APS prototype was prepared by the MPIA in Heidelberg, Germany. Centre Spatial de Li\`ege develops a concept based on Fresnel's rhombs. This paper presents a progress report on the current work aiming at evaluating these prototypes on the SYNAPSE test bench at the Institut d'Astrophysique Spatiale in Orsay, France

Corrosion of Pure iron and Hydrogen Permeation in the Presence of H 2 S with O 2 contamination

International audienceThis paper examines the influence of traces of oxygen on corrosion and hydrogen charging of steel in an H 2 S containing environment. It is well known that H 2 S promotes hydrogen entry into steels, that may result in many types of steel failures such as Hydrogen Induced Cracking (HIC), Sulfide Stress Cracking (SSC), and Stress-Oriented Hydrogen Induced Cracking (SOHIC). Since it is a huge concern for oil and gas industries, standard test methods have been developed and published as NACE technical methods (e.g. NACE TM0284 and NACE TM0177). Though it is recognized that oxygen pollution should be avoided during H 2 S cracking tests, there is still a lack of experimental data to illustrate the potential impacts of a small oxygen pollution. The aim of the present study is to check if oxygen traces can modify the mechanisms of corrosion and hydrogen charging of steel in H 2 S containing medium. Experiments consisted of hydrogen permeation measurements through a thin pure iron membrane. They were performed at free potential circuit in order to ensure more realistic environmental conditions. The corrosion rate was also evaluated and test solutions analyzed

Récupération d'Energie Biomécanique et Systèmes Autonomes

National audienceLa récupération d'énergie (Energy Harvesting) est une thématique en plein essor visant à utiliser l'énergie ambiante (lumière, vibrations, gradients thermiques) présente dans l'environnement direct de dispositifs électroniques (capteurs, équipements mobiles) pour les alimenter, de façon à prolonger leur durée de fonctionnement, voire à les rendre totalement autonomes. La récupération d'énergie est généralement mise en œuvre pour alimenter de petits systèmes électroniques tels que des capteurs autonomes communicants pour le transport, l'industrie ou l'habitat du fait des puissances récupérées assez faibles; appliquée au cas de l'Homme, la récupération d'énergie peut atteindre des puissances de plusieurs milliwatts voire de plusieurs watts permettant d'alimenter des systèmes plus complexes tels que des lecteurs MP3, des téléphones portables ou des systèmes de localisation GPS. De nombreuses sources d'énergie présentes dans l'environnement de l'Homme peuvent être exploitées: le soleil, le gradient thermique entre la peau et l'extérieur, la déformation des vêtements, les contraintes dans les chaussures... . Cet article se focalise plus particulièrement sur la récupération d'énergie mécanique issue du corps humain et présente des exemples de dispositifs et d'applications issus de l'état de l'art montrant que la récupération d'énergie est déjà une réalité; et qu'elle permettra sur le plus long terme d'alimenter des dispositifs placés directement à l'intérieur du corps humain tels que des implants médicaux ou des pacemakers