The effect of continuous venovenous hemofiltration on neutrophil gelatinase-associated lipocalin plasma levels in patients with septic acute kidney injury

International audienceCe texte d’introduction au dossier de Flux 2017/2 (N° 108) questionne l’émergence de la thématique de la circularité des matières dans les politiques publiques urbaines contemporaines. Les articles ont en commun de porter une attention minutieuse à la matérialité des flux qui traversent et constituent la ville et aux objets sociaux qui la composent. Ils analysent les modalités et les conséquences de leur mise en circulation, ainsi que les régulations et les conflits qui l’accompagnent. Que l’ensemble des articles traite de pratiques et de politiques ancrées dans l’espace de la région de Lyon résulte moins d’une volonté monographique que d’une rencontre en partie fortuite. Mais cela souligne en tout cas l’importance d’une approche toujours attentive aux faits géographiques et aux effets de lieu dans la diversité de leurs échelles. Trois thématiques transversales sont présentes : d’abord, en identifiant de nouvelles ressources, les articles permettent de réfléchir à l’invention et à la construction de nouveaux circuits pour les matières. Ensuite, la régulation de ces circuits implique l’identification de nouveaux acteurs et la mise en place de nouvelles formes de relations avec les producteurs et gestionnaires des matières, formant donc l’espace d’une gouvernance renouvelée. Enfin, si ces circuits se structurent dans un espace qui est celui de la proximité géographique, ils s’inscrivent néanmoins dans une logique relationnelle qui ne cesse de questionner les normes et les échelles. Ce numéro permet ainsi de nuancer et de re-matérialiser les injonctions à faire advenir l’économie circulaire dans les villes

The impact of tracheotomy on levels of procalcitonin in patients without sepsis: a prospective study

OBJECTIVE:Procalcitonin is a reliable biomarker of infection and sepsis. We aimed to determine whether tracheotomy influences the procalcitonin concentrations in patients without sepsis and assess whether operative duration and procedure affect the peak procalcitonin level.METHODS:A total of 38 non-septic patients who required a tracheotomy underwent either a percutaneous dilatational tracheotomy (n=19) or a surgical tracheotomy (n=19). Procalcitonin levels were measured at the beginning of the tracheotomy and at 2 h, 4 h, 8 h, 24 h, 48 h and 72 h after the procedure.RESULTS:The baseline procalcitonin concentration before the tracheotomy was 0.24±0.13 ng/mL. The postoperative levels increased rapidly, with a 4-fold elevation after 2 h, reaching a peak 4 h later with a 5-fold increase over baseline. Thereafter, the levels gradually returned to 2-fold greater than the baseline level within 72 h. The peak levels of procalcitonin showed a significant positive correlation with operative durations (r=0.710,

Structural and mechanistic insights into the biosynthesis of CDP-archaeol in membranes

The divergence of archaea, bacteria and eukaryotes was a fundamental step in evolution. One marker of this event is a major difference in membrane lipid chemistry between these kingdoms. Whereas the membranes of bacteria and eukaryotes primarily consist of straight fatty acids ester-bonded to glycerol-3-phosphate, archaeal phospholipids consist of isoprenoid chains ether-bonded to glycerol-1-phosphate. Notably, the mechanisms underlying the biosynthesis of these lipids remain elusive. Here, we report the structure of the CDP-archaeol synthase (CarS) of Aeropyrum pernix (ApCarS) in the CTP- and Mg(2+)-bound state at a resolution of 2.4 Å. The enzyme comprises a transmembrane domain with five helices and cytoplasmic loops that together form a large charged cavity providing a binding site for CTP. Identification of the binding location of CTP and Mg(2+) enabled modeling of the specific lipophilic substrate-binding site, which was supported by site-directed mutagenesis, substrate-binding affinity analyses, and enzyme assays. We propose that archaeol binds within two hydrophobic membrane-embedded grooves formed by the flexible transmembrane helix 5 (TM5), together with TM1 and TM4. Collectively, structural comparisons and analyses, combined with functional studies, not only elucidated the mechanism governing the biosynthesis of phospholipids with ether-bonded isoprenoid chains by CTP transferase, but also provided insights into the evolution of this enzyme superfamily from archaea to bacteria and eukaryotes.Cell Research advance online publication 29 September 2017; doi:10.1038/cr.2017.122

A Comprehensive Review of Wetting Transition Mechanism on the Surfaces of Microstructures from Theory and Testing Methods

Superhydrophobic surfaces have been widely employed in both fundamental research and industrial applications because of their self-cleaning, waterproof, and low-adhesion qualities. Maintaining the stability of the superhydrophobic state and avoiding water infiltration into the microstructure are the basis for realizing these characteristics, while the size, shape, and distribution of the heterogeneous microstructures affect both the static contact angle and the wetting transition mechanism. Here, we review various classical models of wettability, as well as the advanced models for the corrected static contact angle for heterogeneous surfaces, including the general roughness description, fractal theory description, re-entrant geometry description, and contact line description. Subsequently, we emphasize various wetting transition mechanisms on heterogeneous surfaces. The advanced testing strategies to investigate the wetting transition behavior will also be analyzed. In the end, future research priorities on the wetting transition mechanisms of heterogeneous surfaces are highlighted

IMCSA: Providing Better Sequence Alignment Space for Industrial Control Protocol Reverse Engineering

Nowadays, with the wide application of industrial control facilities, industrial control protocol reverse engineering has significant security implications. The reverse method of industrial protocol based on sequence alignment is the current mainstream method because of its high accuracy. However, this method will incur a huge time overhead due to unnecessary alignments during the sequence alignment process. In this paper, we optimize the traditional sequence alignment method by combining the characteristics of industrial control protocols. We improve the frequent sequence mining algorithm, Apriori, to propose a more efficient Bag-of-Words generation algorithm for finding keywords. Then, we precluster the messages based on the generated Bag-of-Words to improve the similarity of the message within a cluster. Finally, we propose an industrial control protocol message preclustering model for sequence alignment, namely, IMCSA. We evaluate it over five industrial control protocols, and the results show that IMCSA can generate clusters with higher message similarity, which will greatly reduce the invalid alignments existing in the sequence alignment stage and ultimately improve the overall efficiency

Ketamine Promotes LPS-Induced Pulmonary Autophagy and Reduces Apoptosis through the AMPK/mTOR Pathway

To explore the protective effect of ketamine on acute lung injury (ALI) in sepsis mice regarding the autophagy and apoptosis, lipopolysaccharide (LPS) was used to construct a sepsis-induced ALI model. In in vivo experiments, ketamine at a concentration of 20 mg/kg was injected before modeling. The serum levels of inflammatory factors IL-1β, IL-6, and TNF-α were detected by enzyme-linked immunosorbent assay (ELISA) kit. At the same time, quantitative real-time polymerase chain reaction (qRT-PCR) was used to detect apoptosis-related factors Bax and Bcl-2 and autophagy-related factors Beclin-1 and P62. In in vitro experiment, firstly, Cell Counting Kit-8 (CCK8) assay was used to detect the cell viability and identify optimal concentration of ketamine. TUNEL staining, Western blotting (WB), and qRT-PCR were used to detect alveolar type II epithelial cells (AEC II) AEC II cell apoptosis. The content of inflammatory factors in the cell supernatant was detected by kits and the autophagy intensity of AEC II cells was detected by PCR and WB. At the same time, the expression changes of AMPK/mTOR pathway were detected by WB technology. Compared with the Sham group, the dry-wet ratio of the lung tissue in the LPS group was obviously increased, the expression of inflammatory factors in the serum was upregulated, and apoptosis and autophagy activation occurred. In the LPS + ketamine group, ketamine significantly promoted autophagy intensity and inhibited inflammatory response, thereby reducing apoptosis. In vitro, 1 mmol/L ketamine can effectively improve the viability of AEC II cells after LPS treatment, promote autophagy, and decrease cell apoptosis. And we found that the above-mentioned effect of ketamine was by regulating the activation of AMPK/mTOR pathway. In this study, we demonstrated that LPS treatment can induce inflammation and autophagy and induce apoptosis in lung cells. In contrast, AMPK expression was activated after ketamine treatment, inhibiting the mTOR pathway and promoting autophagy, thereby alleviating the apoptosis of AEC II cells

Thermal Cracking Analysis of Microbial Cemented Sand under Various Strains Based on the DEM

Microbial-induced calcite precipitation (MICP) is a novel ground improvement method to increase the strength and stiffness of sand. However, the influences of temperature load on the internal microstructure of microbial cemented sand (MCS) material under the experimented strain have always been a key concern for the extensive application. Three kinds of experiments, X-ray diffraction (XRD), X-ray computed tomography (XCT), and scanning electron microscopy (SEM), were conducted to explore the composition, shape, and bonding characteristics of physical assemblies in this paper. A precision DEM modelling of MCS, mainly composed of irregular particle modelling and a mesoparameter calibration algorithm, has been proposed for the thermal cracking analysis under various strains (i.e., 1.0‰–3.0‰). Research results indicate that three kinds of bonding (that is sand-calcite, calcite-calcite, and sand-sand) are present in the MCS material. The application of temperature has a superposition effect on the damage of MCS material with increasing strain. Moreover, as the heating duration gradually increases, the effect of thermal rupture produces a distinct quiet period. The length of thermal cracks in the transverse direction increases throughout the heating process

Strand-specific RNA-seq based identification and functional prediction of drought-responsive lncRNAs in cassava

Abstract Background Long noncoding RNAs (lncRNAs) have emerged as playing crucial roles in abiotic stress responsive regulation, however, the mechanism of lncRNAs underlying drought-tolerance remains largely unknown in cassava, an important tropical and sub-tropical root crop of remarkable drought tolerance. Results In this study, a total of 833 high-confidence lncRNAs, including 652 intergenic and 181 anti-sense lncRNAs, were identified in cassava leaves and root using strand-specific RNA-seq technology, of which 124 were drought-responsive. Trans-regulatory co-expression network revealed that lncRNAs exhibited tissue-specific expression patterns and they preferred to function differently in distinct tissues: e.g., cell-related metabolism, cell wall, and RNA regulation of transcription in folded leaf (FL); degradation of major carbohydrate (CHO) metabolism, calvin cycle and light reaction, light signaling, and tetrapyrrole synthesis in full expanded leaf (FEL); synthesis of major CHO metabolism, nitrogen-metabolism, photosynthesis, and redox in bottom leaf (BL); and hormone metabolism, secondary metabolism, calcium signaling, and abiotic stress in root (RT). In addition, 27 lncRNA-mRNA pairs referred to cis-acting regulation were identified, and these lncRNAs regulated the expression of their neighboring genes mainly through hormone metabolism, RNA regulation of transcription, and signaling of receptor kinase. Besides, 11 lncRNAs were identified acting as putative target mimics of known miRNAs in cassava. Finally, five drought-responsive lncRNAs and 13 co-expressed genes involved in trans-acting, cis-acting, or target mimic regulation were selected and confirmed by qRT-PCR. Conclusions These findings provide a comprehensive view of cassava lncRNAs in response to drought stress, which will enable in-depth functional analysis in the future

The pentatricopeptide repeat protein EMP603 is required for the splicing of mitochondrial Nad1 intron 2 and seed development in maize

Intron splicing is an essential event in post-transcriptional RNA processing in plant mitochondria, which requires the participation of diverse nuclear-encoded splicing factors. However, it is presently unclear how these proteins cooperatively take part in the splicing of specific introns. In this study, we characterized a nuclear-encoded mitochondrial P-type pentatricopeptide repeat (PPR) protein named EMP603. This protein is essential for splicing of intron 2 in the Nad1 gene and interacts with the mitochondria-localized DEAD-box RNA helicase PMH2-5140, the RAD52-like proteins ODB1-0814 and ODB1-5061, and the CRM domain-containing protein Zm-mCSF1. Further study revealed that the N-terminal region of EMP603 interacts with the DEAD-box of PMH2-5140, the CRM domain of Zm-mCSF1, and OBD1-5061, but not with OBD1-0814, whereas the PPR domain of EMP603 can interact with ODB1-0814, ODB1-5061, and PMH2-5140, but not with Zm-mCSF1. Defects in EMP603 severely disrupt the assembly and activity of mitochondrial complex I, leading to impaired mitochondrial function, and delayed seed development. The interactions revealed between EMP603 and PMH2-5140, ODB1-0814, ODB1-5061, and Zm-mCSF1 indicate a possible involvement of a dynamic 'spliceosome-like' complex in intron splicing, and may accelerate the elucidation of the intron splicing mechanism in plant mitochondria