Effects of Cutting Intensity on Soil Physical and Chemical Properties in a Mixed Natural Forest in Southeastern China

The mixed Chinese fir (Cunninghamia lanceolata (Lamb.) Hook.), Masson’s pine (Pinus massoniana Lamb.), and hardwood forest is a major forest type in China and of national and international importance in terms of its provision of both timber and ecosystem services. However, over-harvesting has threatened its long-term productivity and sustainability. We examined the impacts of timber harvesting intensity on soil physical and chemical properties 10 and 15 years after cutting using the research plots established with a randomized block design. We considered five treatments, including clear cutting and low (13.0% removal of growing stock volume), medium (29.1%), high (45.8%), and extra-high (67.1) intensities of selective cutting with non-cutting as the control. The impact on overall soil properties derived from principal component analysis showed increasing with a rise in cutting intensity, and the most critical impact was on soil nutrients, P and K in particular. Soil nutrient loss associated with timber harvesting even at a low cutting intensity could lead to nutrient deficits in this forest although most of the soil physical properties could be recovered under the low and medium intensities of cutting. These results indicate that clear cutting and the selective cutting of extra-high and high intensities should be avoided in this type of forest in the region

Embryonic Porcine Skin Precursors Can Successfully Develop into Integrated Skin without Teratoma Formation Posttransplantation in Nude Mouse Model

How to improve the wound healing quality of severe burn patients is still a challenge due to lack of skin appendages and rete ridges, no matter how much progress has been made in the fields of either stem cell or tissue engineering. We thus systematically studied the growth potential and differentiation capacity of porcine embryonic skin precursors. Implantation of embryonic skin precursors (PESPs) of different gestational ages in nude mice can generate the integrity skin, including epidermis, dermis and skin appendages, such as sweat gland, hair follicle, sebaceous gland, etc.. PESPs of embryonic day 42 possess the maximal growth potential, while, the safe window time of PESPs transplantation for prevention of teratoma risk is E56 or later. In conclusion, PESPs can form the 3 dimensional structures of skin with all necessary skin appendages. Our data strongly indicate that porcine embryonic skin precursors harvested from E56 of minipig may provide new hope for high-quality healing of extensive burns and traumas

Evolutionary history of two evergreen Rhododendron species as revealed by chromosome-level genome assembly

BackgroundThe genus Rhododendron (Ericaceae), a species-rich and widely distributed genus of woody plants, is distinguished for the beautiful and diverse flowers. Rhododendron delavayi Franch. and Rhododendron irroratum Franch., are highly attractive species widely distributed in south-west China and abundant new varieties have been selected from their genetic resources.MethodsWe constructed chromosome-scale genome assemblies for Rhododendron delavayi and Rhododendron irroratum. Phylogenetic and whole-genome duplication analyses were performed to elucidate the evolutionary history of Rhododendron. Further, different types of gene duplications were identified and their contributions to gene family expansion were investigated. Finally, comprehensive characterization and evolutionary analysis of R2R3-MYB and NBS-encoding genes were conducted to explore their evolutionary patterns.ResultsThe phylogenetic analysis classified Rhododendron species into two sister clades, ‘rhododendrons’ and ‘azaleas’. Whole-genome duplication (WGD) analysis unveiled only one WGD event that occurred in Rhododendron after the ancestral γ triplication. Gene duplication and gene family expansion analyses suggested that the younger tandem and proximal duplications contributed greatly to the expansion of gene families involved in secondary metabolite biosynthesis and stress response. The candidate R2R3-MYB genes likely regulating anthocyanin biosynthesis and stress tolerance in Rhododendron will facilitate the breeding for ornamental use. NBS-encoding genes had undergone significant expansion and experienced species-specific gain and loss events in Rhododendron plants.ConclusionsThe reference genomes presented here will provide important genetic resources for molecular breeding and genetic improvement of plants in this economically important Rhododendron genus

Case Report: Identification of a novel LYN::LINC01900 transcript with promyelocytic phenotype and TP53 mutation in acute myeloid leukemia

Acute myeloid leukemia (AML) is a malignant disease of myeloid hematopoietic stem/progenitor cells characterized by the abnormal proliferation of primitive and naive random cells in the bone marrow and peripheral blood. Acute promyelocytic leukemia (APL) is a type (AML-M3) of AML. Most patients with APL have the characteristic chromosomal translocation t(15; 17)(q22; q12), forming PML::RARA fusion. The occurrence and progression of AML are often accompanied by the emergence of gene fusions such as PML::RARA, CBFβ::MYH11, and RUNX1::RUNX1T1, among others. Gene fusions are the main molecular biological abnormalities in acute leukemia, and all fusion genes act as crucial oncogenic factors in leukemia. Herein, we report the first case of LYN::LINC01900 fusion transcript in AML with a promyelocytic phenotype and TP53 mutation. Further studies should address whether new protein products may result from this fusion, as well as the biological function of these new products in disease occurrence and progression

Physiological and Transcriptome Analyses Reveal Short-Term Responses and Formation of Memory Under Drought Stress in Rice

In some plants, exposure to stress can induce a memory response, which appears to play an important role in adaptation to recurrent stress environments. However, whether rice exhibits drought stress memory and the molecular mechanisms that might underlie this process have remained unclear. Here, we ensured that rice drought memory was established after cycles of mild drought and re-watering treatment, and studied gene expression by whole-transcriptome strand-specific RNA sequencing (ssRNA-seq). We detected 6,885 transcripts and 238 lncRNAs involved in the drought memory response, grouped into 16 distinct patterns. Notably, the identified genes of dosage memory generally did not respond to the initial drought treatment. Our results demonstrate that stress memory can be developed in rice under appropriate water deficient stress, and lncRNA, DNA methylation and endogenous phytohormones (especially abscisic acid) participate in rice short-term drought memory, possibly acting as memory factors to activate drought-related memory transcripts in pathways such as photosynthesis and proline biosynthesis, to respond to the subsequent stresses

Dispersive solid-phase microextraction with graphene oxide based molecularly imprinted polymers for determining bis(2-ethylhexyl) phthalate in environmental water

A novel graphene oxide-molecularly imprinted polymers (GO-MIPs) was prepared and applied for selective extraction and preconcentration of bis(2-ethylhexyl) phthalate (DEHP) in environmental water samples by using the dispersive solid-phase microextraction (DSPME) method. The GO-MIPs was synthesized via precipitation polymerization using GO, DEHP, methacrylic acid, and ethylene dimethacrylate as supporting materials, template molecules, functional monomer, and cross-linker, respectively. The prepared GO-MIPs were characterized by scanning electron microscope and Fourier transform infrared spectroscopy. The GO-MIPs-DSPME conditions including type and volume of elution solvents, adsorbents amount, initial concentration of DEHP, pH and ionic strength of water samples were investigated. Under optimized conditions, the DEHP was selectively and effectively extracted in real water samples and enrichment factors of over 100-fold were achieved. Good linearity was obtained with correlation coefficients (R2) over 0.999 and the detection limit (S/N = 3) was 0.92 ng mL−1. The average recoveries of the spiked samples at three concentration levels of DEHP ranged from 82% to 92% with the relative standard deviations less than 6.7%. The results indicated that the proposed GO-MIPs-DSPME extraction protocol combined with HPLC-UV determination could be applied for selective and sensitive analysis of trace DEHP phthalate in environmental water samples

Dynamic mortality factor model with conditional heteroskedasticity

In most methods for modeling mortality rates, the idiosyncratic shocks are assumed to be homoskedastic. This study investigates the conditional heteroskedasticity of mortality in terms of statistical time series. We start from testing the conditional heteroskedasticity of the period effect in the naïve Lee-Carter model for some mortality data. Then we introduce the Generalized Dynamic Factor method and the multivariate BEKK GARCH model to describe mortality dynamics and the conditional heteroskedasticity of mortality. After specifying the number of static factors and dynamic factors by several variants of information criterion, we compare our model with other two models, namely, the Lee-Carter model and the state space model. Based on several error-based measures of performance, our results indicate that if the number of static factors and dynamic factors is properly determined, the method proposed dominates other methods. Finally, we use our method combined with Kalman filter to forecast the mortality rates of Iceland and period life expectancies of Denmark, Finland, Italy and Netherlands.Lee-Carter model Generalized dynamic factor model Multivariate generalized autoregressive conditionally heteroskedastic model Mortality forecasting Kalman filter