Estimating abundance of an elusive cetacean in a complex environment: Harbor porpoises (Phocoena phocoena) in inland waters of Southeast Alaska

The harbor porpoise (Phocoena phocoena) is common in temperate waters of the eastern North Pacific Ocean, including Southeast Alaska inland waters, a complex environment comprised of open waterways, narrow channels, and inlets. Two demographically independent populations are currently recognized in this region. Bycatch of porpoises in the salmon drift gillnet fisheries is suspected to occur regularly. In this study, we apply distance sampling to estimate abundance of harbor porpoise during ship surveys carried out in the summer of 2019. A stratified survey design was implemented to sample different harbor porpoise habitats. Survey tracklines were allocated following a randomized survey design with uniform coverage probability. Density and abundance for the northern and southern Southeast Alaska inland water populations were computed using a combination of design-based line- and strip-transect methods. A total of 2,893 km was surveyed in sea state conditions ranging from Beaufort 0 to 3 and 194 harbor porpoise groups (301 individuals) were detected. An independent sighting dataset from surveys conducted between 1991 and 2012 were used to calculate the probability of missing porpoise groups on the survey trackline (g[0]=0.53, CV=0.11). Abundance of the northern and southern populations were estimated at 1,619 (CV=0.26) and 890 (CV=0.37) porpoises, respectively. Bycatch estimates, which were only obtained for a portion of the drift gillnet fishery, suggest that mortality within the range of the southern population may be unsustainable. Harbor porpoises are highly vulnerable to mortality in gillnets, therefore monitoring abundance and bycatch is important for evaluating the potential impact of fisheries on this species in Southeast Alaska

On the magnetic characteristics of magnetic holes in the solar wind between Mercury and Venus

The occurrence rate of linear and pseudo magnetic holes has been determined during MESSENGER's cruise phase starting from Venus (2007) and arriving at Mercury (2011). It is shown that the occurrence rate of linear magnetic holes, defined as a maximum of 10∘ rotation of the magnetic field over the hole, slowly decreases from Mercury to Venus. The pseudo magnetic holes, defined as a rotation between 10 and 45∘ over the hole, have mostly a constant occurrence rate

Developmental clock and mechanism of de novo polarization of the mouse embryo.

Embryo polarization is critical for mouse development; however, neither the regulatory clock nor the molecular trigger that it activates is known. Here, we show that the embryo polarization clock reflects the onset of zygotic genome activation, and we identify three factors required to trigger polarization. Advancing the timing of transcription factor AP-2 gamma (Tfap2c) and TEA domain transcription factor 4 (Tead4) expression in the presence of activated Ras homolog family member A (RhoA) induces precocious polarization as well as subsequent cell fate specification and morphogenesis. Tfap2c and Tead4 induce expression of actin regulators that control the recruitment of apical proteins on the membrane, whereas RhoA regulates their lateral mobility, allowing the emergence of the apical domain. Thus, Tfap2c, Tead4, and RhoA are regulators for the onset of polarization and cell fate segregation in the mouse

First investigation of the diamagnetic cavity boundary layer with a 1D3V PIC simulation

Context. Amongst the different features and boundaries encountered around comets, one remains of particular interest to the plasma community: The diamagnetic cavity. Crossed for the first time at 1P/Halley during the Giotto flyby in 1986 and later met more than 700 times by the ESA Rosetta spacecraft around Comet 67P/Churyumov-Gerasimenko, this region, almost free of any magnetic field, surrounds nuclei of active comets. However, previous observations and modelling of this part of the coma have not yet provided a definitive answer as to the origin of such a cavity and on its border, the diamagnetic cavity boundary layer. Aims. We investigate which forces and equilibrium might be at play and balance the magnetic pressure at this boundary down to the spatial and temporal scales of the electrons in the 1D collisionless case. In addition, we scrutinise assumptions made in magneto-hydrodynamic and hybrid simulations of this environment and check for their validity. Methods. We simulated this region at the electron scale by means of 1D3V particle-in-cell simulations and SMILEI code. Results. Across this layer, depending on the magnetic field strength, the electric field is governed by different equilibria, with a thin double-layer forming ahead. In addition, we show that the electron distribution function departs from Maxwellian and/or gyrotropic distributions and that electrons do not behave adiabatically. We demonstrate the need to investigate this region at the electron scale in depth with fully kinetic simulations

An in vitro stem cell model of human epiblast and yolk sac interaction.

Human embryogenesis entails complex signalling interactions between embryonic and extra-embryonic cells. However, how extra-embryonic cells direct morphogenesis within the human embryo remains largely unknown due to a lack of relevant stem cell models. Here, we have established conditions to differentiate human pluripotent stem cells (hPSCs) into yolk sac-like cells (YSLCs) that resemble the post-implantation human hypoblast molecularly and functionally. YSLCs induce the expression of pluripotency and anterior ectoderm markers in human embryonic stem cells (hESCs) at the expense of mesoderm and endoderm markers. This activity is mediated by the release of BMP and WNT signalling pathway inhibitors, and, therefore, resembles the functioning of the anterior visceral endoderm signalling centre of the mouse embryo, which establishes the anterior-posterior axis. Our results implicate the yolk sac in epiblast cell fate specification in the human embryo and propose YSLCs as a tool for studying post-implantation human embryo development in vitro.</i

Validation of the GetReal Trial Tool - Facilitating discussion and understanding more pragmatic design choices and their implications

Background: The GetReal Trial Tool is a decision support tool to assess the impact of design choices on generalizability of clinical trials to routine clinical practice, while taking into account the risk of bias, precision, acceptability and operational feasibility. This study describes the validation of the GetReal Trial Tool. Methods: Twelve experts took part in the GetReal Trial tool validation using the protocols of 6 trials conducted with pragmatic elements. The tool entails 7 domains with a total of 43 questions. A pooled Kappa statistic (95% CI) using random effects model was estimated using Open Meta (analyst) software. The possible operational challenges were collated and discussed with the trialists that conducted the trials. Results: Agreement in the design choices made for the trial protocols was >50% for all the trials and all teams reached consensus during discussion. The pooled Kappa statistic (95% CI) was 0.236 (0.154-0.318). The GetReal Trial tool highlighted several operational challenges, of which almost half had been experienced previously by the trialists. Out of 25 additional operational challenges mentioned by the trialists, 76% were already highlighted by the tool. The tool was considered helpful to optimize trials right from the design stage. Conclusion: The GetReal Trial Tool helps to scrutinize the choice of study design in the light of Real World Evidence generation. The tool identifies most of the operational challenges experienced by trialists to date. The tool serves the intended purpose of facilitating discussion and understanding more pragmatic design choices and their implications

Warm protons at comet 67P/Churyumov–Gerasimenko – implications for the infant bow shock

The plasma around comet 67P/Churyumov–Gerasimenko showed remarkable variability throughout the entire Rosetta mission. Plasma boundaries such as the diamagnetic cavity, solar wind ion cavity and infant bow shock separate regions with distinct plasma parameters from each other. Here, we focus on a particular feature in the plasma: warm, slow solar wind protons. We investigate this particular proton population further by focusing on the proton behaviour and surveying all of the Rosetta comet phase data. We find over 300 events where Rosetta transited from a region with fast, cold protons into a region with warm, slow protons. We investigate the properties of the plasma and magnetic field at this boundary and the location where it can be found. We find that the protons are preferentially detected at intermediate gas production rates with a slight trend towards larger cometocentric distances for higher gas production rates. The events can mostly be found in the positive convective electric field hemisphere. These results agree well with simulations of the infant bow shock (IBS), an asymmetric structure in the plasma environment previously detected on only 2 d during the comet phase. The properties of the plasma on both sides of this structure are harder to constrain, but there is a trend towards higher electron flux, lower magnetic field, higher magnetic field power spectral density and higher density in the region that contains the warm protons. This is in partial agreement with the previous IBS definitions; however, it also indicates that the plasma and this structure are highly non-stationary. For future research, Comet Interceptor, with its multi-point measurements, can help to disentangle the spatial and temporal effects and give more clarity on the influence of changing upstream conditions on the movement of boundaries in this unusual environment

Comparison of breast and bowel cancer screening uptake patterns in a common cohort of South Asian women in England

Background: Inequalities in uptake of cancer screening by ethnic minority populations are well documented in a number of international studies. However, most studies to date have explored screening uptake for a single cancer only. This paper compares breast and bowel cancer screening uptake for a cohort of South Asian women invited to undertake both, and similarly investigates these women's breast cancer screening behaviour over a period of fifteen years. Methods: Screening data for rounds 1, 2 and 5 (1989-2004) of the NHS breast cancer screening programme and for round 1 of the NHS bowel screening pilot (2000-2002) were obtained for women aged 50-69 resident in the English bowel screening pilot site, Coventry and Warwickshire, who had been invited to undertake breast and bowel cancer screening in the period 2000-2002. Breast and bowel cancer screening uptake levels were calculated and compared using the chi-squared test. Results: 72,566 women were invited to breast and bowel cancer screening after exclusions. Of these, 3,539 were South Asian and 69,027 non-Asian; 18,730 had been invited to mammography over the previous fifteen years (rounds 1 to 5). South Asian women were significantly less likely to undertake both breast and bowel cancer screening; 29.9% (n = 1,057) compared to 59.4% (n = 40,969) for non-Asians (p < 0.001). Women in both groups who consistently chose to undertake breast cancer screening in rounds 1, 2 and 5 were more likely to complete round 1 bowel cancer screening. However, the likelihood of completion of bowel cancer screening was still significantly lower for South Asians; 49.5% vs. 82.3% for non-Asians, p < 0.001. South Asian women who undertook breast cancer screening in only one round were no more likely to complete bowel cancer screening than those who decided against breast cancer screening in all three rounds. In contrast, similar women in the non-Asian population had an increased likelihood of completing the new bowel cancer screening test. The likelihood of continued uptake of mammography after undertaking screening in round 1 differed between South Asian religio-linguistic groups. Noticeably, women in the Muslim population were less likely to continue to participate in mammography than those in other South Asian groups. Conclusions: Culturally appropriate targeted interventions are required to reduce observed disparities in cancer screening uptakes

Annotating very high-resolution satellite imagery: A whale case study

The use of very high-resolution (VHR) optical satellites is gaining momentum in the field of wildlife monitoring, particularly for whales, as this technology is showing potential for monitoring the less studied regions. However, surveying large areas using VHR optical satellite imagery requires the development of automated systems to detect targets. Machine learning approaches require large training datasets of annotated images. Here we propose a standardised workflow to annotate VHR optical satellite imagery using ESRI ArcMap 10.8, and ESRI ArcGIS Pro 2.5., using cetaceans as a case study, to develop AI-ready annotations. • A step-by-step protocol to review VHR optical satellite images and annotate the features of interest. • A step-by-step protocol to create bounding boxes encompassing the features of interest. • A step-by-step guide to clip the satellite image using bounding boxes to create image chips