A real-time PCR method for quantification of the total and major variant strains of the Deformed wing virus

Funding: ELB was supported by a Biotechnology and Biological Sciences Research Council (BBSRC) EASTBIO Doctoral Training Partnership (http://www.bbsrc.ac.uk) [grant number BB/J01446X/1] and an Eastern Association Regional Studentship (EARS) and The Morley Agricultural Foundation awarded to ASB. CRC was supported by a KTN BBSRC CASE studentship (BB/M503526/1) (http://www.bbsrc.ac.uk), part-funded by the Scottish Beekeeping Association (https://www.scottishbeekeepers.org.uk/) and the Animal Health - Disease Prevention, Scottish Government awarded to ASB CRC. This project received funding from the European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no 613960 (SMARTBEES) (http://www.smartbees-fp7.eu/) awarded to ASB. The funders had no role in study design, data collection and analysis decision to publish, or preparation of the manuscript. Acknowledgments The authors wish to thank Mr W. Thrale, Mr Z. Blackmore, Mr J. Quinlan, and Mr J. Palombo for sample collection from the South East of England and Margie Ramsey for Beinn Eighe National Nature Reserve sample collection.Peer reviewedPublisher PD

Determining information for inclusion in a decision-support intervention for clinical trial participation : A modified Delphi approach

Peer reviewedPostprin

Impact of self-heating on the statistical variability in bulk and SOI FinFETs

In this paper for the first time we study the impact of self-heating on the statistical variability of bulk and SOI FinFETs designed to meet the requirements of the 14/16nm technology node. The simulations are performed using the GSS ‘atomistic’ simulator GARAND using an enhanced electro-thermal model that takes into account the impact of the fin geometry on the thermal conductivity. In the simulations we have compared the statistical variability obtained from full-scale electro-thermal simulations with the variability at uniform room temperature and at the maximum or average temperatures obtained in the electro-thermal simulations. The combined effects of line edge roughness and metal gate granularity are taken into account. The distributions and the correlations between key figures of merit including the threshold voltage, on-current, subthreshold slope and leakage current are presented and analysed

Foraging environment determines the genetic architecture and evolutionary potential of trophic morphology in cichlid fishes

Phenotypic plasticity allows organisms to change their phenotype in response to shifts in the environment. While a central topic in current discussions of evolutionary potential, a comprehensive understanding of the genetic underpinnings of plasticity is lacking in systems undergoing adaptive diversification. Here, we investigate the genetic basis of phenotypic plasticity in a textbook adaptive radiation, Lake Malawi cichlid fishes. Specifically, we crossed two divergent species to generate an F3 hybrid mapping population. At early juvenile stages, hybrid families were split and reared in alternate foraging environments that mimicked benthic/scraping or limnetic/sucking modes of feeding. These alternate treatments produced a variation in morphology that was broadly similar to the major axis of divergence among Malawi cichlids, providing support for the flexible stem theory of adaptive radiation. Next, we found that the genetic architecture of several morphological traits was highly sensitive to the environment. In particular, of 22 significant quantitative trait loci (QTL), only one was shared between the environments. In addition, we identified QTL acting across environments with alternate alleles being differentially sensitive to the environment. Thus, our data suggest that while plasticity is largely determined by loci specific to a given environment, it may also be influenced by loci operating across environments. Finally, our mapping data provide evidence for the evolution of plasticity via genetic assimilation at an important regulatory locus, ptch1. In all, our data address long-standing discussions about the genetic basis and evolution of plasticity. They also underscore the importance of the environment in affecting developmental outcomes, genetic architectures, morphological diversity and evolutionary potential

Feasting, fasting and freezing: energetic effects of meal size and temperature on torpor expression by little brown bats Myotis lucifugus

Torpor is an adaptation for energy conservation employed by many species of small-bodied endotherms. However, surprisingly little is known regarding proximate factors influencing day-to-day variation in torpor expression in the wild. We used open-flow respirometry to quantify torpor expression in nine little brown bats (Myotis lucifugus, LeConte 1831) at two ambient temperatures (7°C and 17°C) following either sham feeding or consumption of a high-protein meal (50% or 100% of the mass required to reach satiation for each individual). Food consumption significantly increased the time spent normothermic before torpor entry but did not affect either the rate of body cooling or torpid metabolic rate. Bats did not fully exploit potential energy savings by maximising their use of torpor. Instead they varied torpor expression such that total energy expenditure over the course of each 22-h trial was balanced against gross energy intake immediately before the trial, independent of ambient temperature. This was accomplished by adjusting the timing of entry into torpor (thus altering the time spent torpid), rather than by modulating torpid metabolic rate. However, pre-trial body mass was also a significant predictor of torpor expression, which suggests that energy reserves combine with recent foraging success to influence individuals’ decisions about depth and duration of their torpor bouts. We also present evidence that little brown bats use the heat generated through digestion (i.e. the heat increment of feeding) to substitute for active thermogenesis at sub-thermoneutral temperatures, thereby reducing the energetic costs of thermoregulation prior to torpor entry."Funding was provided by Natural Sciences and Engineering Research Council (NSERC, Canada) Discovery grants to C.K.R.W. and K.L.C., and a NSERC Undergraduate Student Research Award to A.L.M. The University of Winnipeg Bat Lab and C.K.R.W. are also funded by the Canada Foundation for Innovation and the Manitoba Research and Innovation Fund."http://jeb.biologists.org/content/213/12/216

VIRTUAL EXPERIENCE, REAL LEARNING

BACKGROUND Students rarely appreciate the interdisciplinarity of medical sciences or reflect upon broader applications of their studies. COVID-19 forced us to develop online learning experiences that are authentic, engaging and scalable because our 540 first-year Human Biology students see the Medical Science program only as a gateway to studying Medicine. Our aim was to explore an environment that challenged their perceptions of medical science. DESCRIPTION OF INTERVENTION We used a Ricoh Theta Z1 360°-camera and 3DVista© software to create a virtual tour of the Chau Chak Wing Museum, a facility co-locating The University of Sydney’s collections. The tour included mummified remains, the Jericho skull, and an anatomical clastic model, but also taxidermised thylacine, extant animals, and items of anthropologic interest. Local and remote students had identical experience of the collections. RESULTS Students engaged positively with an activity that was not demanding. Most reflected new appreciation of how historical models advance our understanding, especially with response to disease. Many also expressed a desire to visit the museum in person. CONCLUSIONS 3D virtual experiences are increasingly popular for asynchronous learning, including remote/hazardous locations and workplace induction. This is a relatively inexpensive, easily developed and deployed option for online teaching in medical sciences, especially in laboratory demonstrations

Granular Rheology in Zero Gravity

We present an experimental investigation on the rheological behavior of model granular media made of nearly elastic spherical particles. The experiments are performed in a cylindrical Couette geometry and the experimental device is placed inside an airplane undergoing parabolic flights to cancel the effect of gravity. The corresponding curves, shear stress versus shear rate, are presented and a comparison with existing theories is proposed. The quadratic dependence on the shear rate is clearly shown and the behavior as a function of the solid volume fraction of particles exhibits a power law function. It is shown that theoretical predictions overestimate the experiments. We observe, at intermediate volume fractions, the formation of rings of particles regularly spaced along the height of the cell. The differences observed between experimental results and theoretical predictions are discussed and related to the structures formed in the granular medium submitted to the external shear.Comment: 10 pages, 6 figures to be published in Journal of Physics : Condensed Matte

Dendrimer-coated carbon nanotubes deliver dsRNA and increase the efficacy of gene knockdown in the red flour beetle Tribolium castaneum

Thanks to Dr Alan S. Bowman at the Institute for Biological and Environmental Sciences, University of Aberdeen for providing facilities and laboratory equipment for insect work and to Kevin S. Mackenzie and staff at the Microscopy and Histology Core Facility at the University of Aberdeen for TEM preparations. Scottish Crucible Project Award 2014 provided financial support for this research. CHE was supported by a Knowledge Transfer Network BBSRC Industrial Case (BB/L502467/1) studentship. CRC was supported by a KTN BBSRC CASE studentship (BB/M503526/1). AM and AC were supported by the Italian Ministry of Health (RF-PE-2011-02347026). EMC was supported by European Union’s Seventh Framework Programme for research, technological development and demonstration under grant agreement no. 613960 (SMARTBEES) and Veterinary Medicines Directorate, Department for Environment Food & Rural Affairs (Project # VM0517).Peer reviewedPublisher PD

The comprehensive cohort model in a pilot trial in orthopaedic trauma

Background: The primary aim of this study was to provide an estimate of effect size for the functional outcome of operative versus non-operative treatment for patients with an acute rupture of the Achilles tendon using accelerated rehabilitation for both groups of patients. The secondary aim was to assess the use of a comprehensive cohort research design (i.e. a parallel patient-preference group alongside a randomised group) in improving the accuracy of this estimate within an orthopaedic trauma setting. Methods: Pragmatic randomised controlled trial and comprehensive cohort study within a level 1 trauma centre. Twenty randomised participants (10 operative and 10 non-operative) and 29 preference participants (3 operative and 26 non-operative). The ge range was 22-72 years and 37 of the 52 patients were men. All participants had an acute rupture of their Achilles tendon and no other injuries. All of the patients in the operative group had a simple end-to-end repair of the tendon with no augmentation. Both groups then followed the same eight-week immediate weight-bearing rehabilitation programme using an off-the-shelf orthotic. The disability rating index (DRI; primary outcome), EQ-5D, Achilles Total Rupture Score and complications were assessed ed at two weeks, six weeks, three months, six months and nine months after initial injury. Results: At nine months, there was no significant difference in DRI between patients randomised to operative or non-operative management. There was no difference in DRI between the randomised group and the parallel patient preference group. The use of a comprehensive cohort of patients did not provide useful additional information as to the treatment effect size because the majority of patients chose non-operative management. Conclusions: Recruitment to clinical trials that compare operative and non-operative interventions is notoriously difficult; especially within the trauma setting. Including a parallel patient preference group to create a comprehensive cohort of patients has been suggested as a way of increasing the power of such trials. In our study, the comprehensive cohort model doubled the number of patients involved in the study. However, a strong preference for non-operative treatment meant that the increased number of patients did not significantly increase the ability of the trial to detect a difference between the two interventions

The Knee Arthroplasty Trial (KAT) : design features, baseline characteristics and two-year functional outcomes after alternative approaches to knee replacement

Background: The aim of continued development of total knee replacement systems has been the further improvement of the quality of life and increasing the duration of prosthetic survival. Our goal was to evaluate the effects of several design features, including metal backing of the tibial component, patellar resurfacing, and a mobile bearing between the tibial and femoral components, on the function and survival of the implant. Methods: A pragmatic, multicenter, randomized, controlled trial involving 116 surgeons in thirty-four centers in the United Kingdom was performed; 2352 participants were randomly allocated to be treated with or without a metal backing of the tibial component (409), with or without patellar resurfacing (1715), and/or with or without a mobile bearing (539). Randomization to more than one comparison was allowed. The primary outcome measures were the Oxford Knee Score (OKS), Short Form-12, EuroQol-5D, and the need for additional surgery. The results up to two years postoperatively are reported. Results: Functional status and quality-of-life scores were low at baseline but improved markedly across all trial groups following knee replacement (mean overall OKS, 17.98 points at baseline and 34.82 points at two years). Most of the change was observed at three months after the surgery. Six percent of the patients had additional knee surgery within two years. There was no evidence of differences in clinical, functional, or quality-of-life measures between the randomized groups at two years. Conclusions: Patients have substantial improvement following total knee replacement. This is the first adequately powered randomized controlled trial, of which we are aware, in which the effects of metal backing, patellar resurfacing, and a mobile bearing were investigated. We found no evidence of an effect of these variants on the rate of early complications or on functional recovery up to two years after total knee replacement. Level of Evidence: Therapeutic Level I. See Instructions to Authors for a complete description of levels of evidence.NIHR Health Technology Assessment Programme (Project Number 95/10/01); Howmedica Osteonics; Zimmer; DePuy, a Johnson and Johnson company; Corin Medical; Smith and Nephew Healthcare. Biomet Merck; and Wright CremascoliPeer reviewe