Entropic Barriers, Frustration and Order: Basic Ingredients in Protein Folding

We solve a model that takes into account entropic barriers, frustration, and the organization of a protein-like molecule. For a chain of size $M$, there is an effective folding transition to an ordered structure. Without frustration, this state is reached in a time that scales as $M^{\lambda}$, with $\lambda\simeq 3$. This scaling is limited by the amount of frustration which leads to the dynamical selectivity of proteins: foldable proteins are limited to $\sim 300$ monomers; and they are stable in {\it one} range of temperatures, independent of size and structure. These predictions explain generic properties of {\it in vivo} proteins.Comment: 4 pages, 4 Figures appended as postscript fil

История музейного дела в Крыму и один из ее современных старателей

Рецензия на монографию Андрея Анатольевича Непомнящего "Музейное дело в Крыму и его старатели (XlX-начало XX века). Библиографическое исследование

Critical points in a relativistic bosonic gas induced by the quantum structure of spacetime

It is well known that phase transitions arise if the interaction among particles embodies an attractive as well as a repulsive contribution. In this work it will be shown that the breakdown of Lorentz symmetry, characterized through a deformation in the relation dispersion, plus the bosonic statistics predict the emergence of critical points. In other words, in some quantum gravity models the structure of spacetime implies the emergence of critical points even when no interaction among the particle has been considered.Comment: 5 pages, no figure

Reply to Comment on "Criterion that Determines the Foldability of Proteins"

We point out that the correlation between folding times and $\sigma = (T_{\theta } - T_{f})/T_{\theta }$ in protein-like heteropolymer models where $T_{\theta }$ and $T_{f}$ are the collapse and folding transition temperatures was already established in 1993 before the other presumed equivalent criterion (folding times correlating with $T_{f}$ alone) was suggested. We argue that the folding times for these models show no useful correlation with the energy gap even if restricted to the ensemble of compact structures as suggested by Karplus and Shakhnovich (cond-mat/9606037).Comment: 6 pages, Latex, 2 Postscript figures. Plots explicitly showing the lack of correlation between folding time and energy gap are adde

Influence of turbidity and clouds on satellite total ozone data over Madrid (Spain)

This article focuses on the comparison of the total ozone column data from three satellite instruments; Total Ozone Mapping Spectrometers (TOMS) on board the Earth Probe (EP), Ozone Monitoring Instrument (OMI) on board AURA and Global Ozone Monitoring Experiment (GOME) on board ERS/2, with ground-based measurement recorded by a well calibrated Brewer spectrophotometer located in Madrid during the period 1996–2008. A cluster classification based on solar radiation (global, direct and diffuse), cloudiness and aerosol index allow selecting hazy, cloudy, very cloudy and clear days. Thus, the differences between Brewer and satellite total ozone data for each cluster have been analyzed. The accuracy of EP-TOMS total ozone data is affected by moderate cloudiness, showing a mean absolute bias error (MABE) of 2.0%. In addition, the turbidity also has a significant influence on EP-TOMS total ozone data with a MABE ~1.6%. Those data are in contrast with clear days with MABE ~1.2%. The total ozone data derived from the OMI instrument show clear bias at clear and hazy days with small uncertainties (~0.8%). Finally, the total ozone observations obtained with the GOME instrument show a very smooth dependence with respect to clouds and turbidity, showing a robust retrieval algorithm over these conditions.Manuel Ant´on thanks Ministerio de Ciencia e Innovaci´on and Fondo Social Europeo for the award of a postdoctoral grant (Juan de la Cierva). This work was partially supported by Ministerio de Ciencia e Innovacion under project CGL2008-05939-C03-02/CLI

Scalable Focused Ion Beam Creation of Nearly Lifetime-Limited Single Quantum Emitters in Diamond Nanostructures

The controlled creation of defect center---nanocavity systems is one of the outstanding challenges for efficiently interfacing spin quantum memories with photons for photon-based entanglement operations in a quantum network. Here, we demonstrate direct, maskless creation of atom-like single silicon-vacancy (SiV) centers in diamond nanostructures via focused ion beam implantation with $\sim 32$ nm lateral precision and $< 50$ nm positioning accuracy relative to a nanocavity. Moreover, we determine the Si+ ion to SiV center conversion yield to $\sim 2.5\%$ and observe a 10-fold conversion yield increase by additional electron irradiation. We extract inhomogeneously broadened ensemble emission linewidths of $\sim 51$ GHz, and close to lifetime-limited single-emitter transition linewidths down to $126 \pm13$ MHz corresponding to $\sim 1.4$-times the natural linewidth. This demonstration of deterministic creation of optically coherent solid-state single quantum systems is an important step towards development of scalable quantum optical devices

Finite size effects on thermal denaturation of globular proteins

Finite size effects on the cooperative thermal denaturation of proteins are considered. A dimensionless measure of cooperativity, Omega, scales as N^zeta, where N is the number of amino acids. Surprisingly, we find that zeta is universal with zeta = 1 + gamma, where the exponent gamma characterizes the divergence of the susceptibility for a self-avoiding walk. Our lattice model simulations and experimental data are consistent with the theory. Our finding rationalizes the marginal stability of proteins and substantiates the earlier predictions that the efficient folding of two-state proteins requires the folding transition temperature to be close to the collapse temperature.Comment: 3 figures. Physical Review Letters (in press