Langmuir cells and mixing in the upper ocean

The presence of surface gravity waves at the ocean surface has two important effects on turbulence in the oceanic mixed layer (ML): the wave breaking and the Langmuir cells (LC). Both these effects act as additional sources of turbulent kinetic energy (TKE) in the oceanic ML, and hence are important to mixing in the upper ocean. The breaking of high wave-number components of the wind wave spectrum provides an intense but sporadic source of turbulence in the upper surface; turbulence thus injected diffuses downward, while decaying rapidly, modifying oceanic near-surface properties which in turn could affect the air-sea transfer of heat and dissolved gases. LC provide another source of additional turbulence in the water column; they are counter-rotating cells inside the ML, with their axes roughly aligned in the direction of the wind (Langmuir I., Science, 87 (1938) 119). These structures are usually made evident by the presence of debris and foam in the convergence area of the cells, and are generated by the interaction of the wave-field–induced Stokes drift with the wind-induced shear stress. LC have long been thought to have a substantial influence on mixing in the upper ocean, but the difficulty in their parameterization have made ML modelers consistently ignore them in the past. However, recent Large Eddy Simulations (LES) studies suggest that it is possible to include their effect on mixing by simply adding additional production terms in the turbulence equations, thus enabling even 1D models to incorporate LC-driven turbulence. Since LC also modify the Coriolis terms in the mean momentum equations by the addition of a term involving the Stokes drift, their effect on the velocity structure in the ML is also quite significant and could have a major impact on the drift of objects and spilled oil in the upper ocean. In this paper we examine the effect of surface gravity waves on mixing in the upper ocean, focusing on Langmuir circulations, which is by far the dominant part of the surface wave contribution to mixing. Oceanic ML models incorporating these effects are applied to an observation station in the Northern Adriatic Sea to see what the extent of these effects might be. It is shown that the surface wave effects can indeed be significant; in particular, the modification of the velocity profile due to LC-generated turbulence can be large under certain conditions. However, the surface wave effects on the bulk properties of the ML, such as the associated temperature, while significant, are generally speaking well within the errors introduced by uncertainties in the external forcing of the models. This seems to be the reason why ML models, though pretty much ignoring surface wave effects until recently, have been reasonably successful in depicting the evolution of the mixed layer temperature (MLT) at various timescales

Reação de cultivares de soja às doenças de final de ciclo com e sem aplicação de fungicidas.

O uso de cultivares resistentes às doenças de final de ciclo (DFCs), como Septoria glycines Hemmi e Cercospora kikuchii Matsu & Tomov é uma ferramenta importante no manejo integrado de doenças. O objetivo deste trabalho foi avaliar a reação de quatro cultivares de soja às DFCs, com e sem aplicação de fungicidas. Foram testadas as cultivares BMX Apolo RR, BMX Impacto RR, Fundacep 53 RR e Fundacep 55 RR, na região Nordeste do Rio como criar um blog Grande do Sul. O delineamento experimental foi o de blocos completos casualizados, com quatro repetições, em esquema de parcelas subdivididas. Nas parcelas foram alocadas duas situações de controle de doenças, com e sem aplicação de fungicidas, e nas subparcelas foram alocadas as cultivares testadas. Foram avaliadas variáveis morfológicas, a severidade de DFCs e a produtividade de grãos. Características como ciclo de desenvolvimento curto e plantas baixas conferem menores danos de DFCs em plantas de soja.bitstream/item/110169/1/Reacao-de-cultivares-de-soja-as-doencas-de-final-de-ciclo-com-e-sem-aplicacao-de-fungicidas.pd

Impact assessment for the improved four boundary conditions (at bed, free-surface, land-boundary and offshore-boundary) on coastal hydrodynamics and particulate transport

The FIELD_AC project aims at providing an improved operational service for coastal areas and at generating added value for shelf and regional scale predictions. Coastal-zone oceanographic predictions seldom appraise the land discharge as a boundary condition. River fluxes are sometimes considered, but neglecting their 3D character, while the "distributed" continental run-off is not taken into consideration. Moreover, many coastal scale processes, particularly those relevant in geographically restricted domains (coast with harbors or river mouth areas), are not well parametrized in present simulations.Work package 3 dedicated to Boundary Fluxes aims to establish and use the best possible boundary conditions for coastal water quality modelling. On this scale, all boundaries become important. For the land boundary side the needed products are distributed and point wise run-off both quantitatively and qualitatively. For the offshore boundary condition, 3D current, water quality field, and wave spectra will be used. For the atmospheric boundary, products from local scale meteorological models (wind, atmospheric pressure and rainfall) are needed. For the seabed, boundary information on sediment composition, bedforms and bathymetry and bio-geo-chemical parameters is essential.This report addresses the impact assessment for improvements in the four boundary conditions (boundary fluxes from land, free-surface boundary condition, seabed boundary condition and open boundary fluxes) on coastal hydrodynamics and particulate transport. The description of the improved four boundary conditions is followed by examples of concrete impact assessment of the theory into the Catalan coast, Liverpool Bay, German Bight and Gulf of Venice

Relative sea-level rise and potential submersion risk for 2100 on 16 coastal plains of the mediterranean sea

The coasts of the Mediterranean Sea are dynamic habitats in which human activities have been conducted for centuries and which feature micro-tidal environments with about 0.40 m of range. For this reason, human settlements are still concentrated along a narrow coastline strip, where any change in the sea level and coastal dynamics may impact anthropic activities. In the frame of the RITMARE and the Copernicus Projects, we analyzed light detection and ranging (LiDAR) and Copernicus Earth Observation data to provide estimates of potential marine submersion for 2100 for 16 small-sized coastal plains located in the Italian peninsula and four Mediterranean countries (France, Spain, Tunisia, Cyprus) all characterized by different geological, tectonic and morphological features. The objective of this multidisciplinary study is to provide the first maps of sea-level rise scenarios for 2100 for the IPCC RCP 8.5 and Rahmstorf (2007) projections for the above affected coastal zones, which are the locations of touristic resorts, railways, airports and heritage sites. On the basis of our model (eustatic projection for 2100, glaciohydrostasy values and tectonic vertical movement), we provide 16 high-definition submersion maps. We estimated a potential loss of land for the above areas of between about 148 km2 (IPCC-RCP8.5 scenario) and 192 km2 (Rahmstorf scenario), along a coastline length of about 400 km

Geodetic Observations at the Eolian Islands (Southern Italy)

In order to investigate the dynamic processes actually in progress in the Aeolian Islands a volcanic area in Southern Italy, high precision geodetic observations are employed. the knowledge of the kinematic field (vertical and horizontal displacements) and of the time-space gravity variations is an important constrain for any model describing the geodynamic processes involving the investigated area. Gravimetric (absolute, relative and gradiometric), photogrammetric, altimetric and GPS surveys are periodically carried out on networks spanning over the whole aeolian archipelagus. Recently a GPS network has been designed and surveyed to obtain a more complete knowledge of the kinematic field taking place in the area. This will improve the understanding of the tectonic processes acting in the area. The result of the interdisplinary approach are presented and discussed.Published33-501.3. TTC - Sorveglianza geodetica delle aree vulcaniche attivereserve

Infrapatellar fat pad gene expression and protein production in patients with and without osteoarthritis

Osteoarthritis (OA) is one of the most common joint disorders. Evidence suggests that the infrapatellar fat pad (IFP) is directly involved in OA pathology. However, a comparison between OA versus non-OA IFP is still missing. Thus, the aim of this study was to compare IFP molecular, adipocytes and extracellular matrix characteristics of patients affected by OA, and patients undergoing anterior cruciate ligament (ACL) reconstruction. We hypothesized that not only inflammation but also changes in adipocytes and extracellular matrix (ECM) composition might be involved in OA pathogenesis. Fifty-three patients were enrolled. IFP biopsies were obtained, evaluating: (a) lymphocytic infiltration and vascularization; (b) adipocytes area and number; (c) adipo-cytokines and extracellular matrix gene expression levels; (d) IL-6 and VEGF protein production; (e) collagen fibers distribution. OA IFP was more inflamed and vascularized compared to ACL IFP. OA IFP adipocytes were larger and numerically lower (1.3-fold) than ACL IFP adipocytes. An increase of gene expression of typical white adipose tissue genes was observed in OA compared to ACL IFP. Collagen-types distribution was different in the OA IFP group compared to controls, possibly explaining the change of the biomechanical characteristics found in OA IFP. Statistical linear models revealed that the adipocyte area correlated with BMI in the OA group. In conclusion, inflammation and fibrotic changes of OA IFP could represent novel therapeutic targets to counteract OA

Inflammation induced by influenza virus impairs human innate immune control of pneumococcus

Secondary bacterial pneumonia following influenza infection is a significant cause of mortality worldwide. Upper respiratory tract pneumococcal carriage is important as both determinants of disease and population transmission. The immunological mechanisms that contain pneumococcal carriage are well-studied in mice but remain unclear in humans. Loss of this control of carriage following influenza infection is associated with secondary bacterial pneumonia during seasonal and pandemic outbreaks. We used a human type 6B pneumococcal challenge model to show that carriage acquisition induces early degranulation of resident neutrophils and recruitment of monocytes to the nose. Monocyte function associated with clearance of pneumococcal carriage. Prior nasal infection with live attenuated influenza virus induced inflammation, impaired innate function and altered genome-wide nasal gene responses to pneumococcal carriage. Levels of the cytokine IP-10 promoted by viral infection at the time of pneumococcal encounter was positively associated with bacterial density. These findings provide novel insights in nasal immunity to pneumococcus and viral-bacterial interactions during co-infection

Structural insight into molecular mechanism of poly (ethylene terephthalate) degradation

Plastics, including poly(ethylene terephthalate) (PET), possess many desirable characteristics and thus are widely used in daily life. However, non-biodegradability, once thought to be an advantage offered by plastics, is causing major environmental problem. Recently, a PET-degrading bacterium, Ideonella sakaiensis, was identified and suggested for possible use in degradation and/or recycling of PET. However, the molecular mechanism of PET degradation is not known. Here we report the crystal structure of I. sakaiensis PETase (IsPETase) at 1.5 angstrom resolution. IsPETase has a Ser-His-Asp catalytic triad at its active site and contains an optimal substrate binding site to accommodate four monohydroxyethyl terephthalate (MHET) moieties of PET. Based on structural and site-directed mutagenesis experiments, the detailed process of PET degradation into MHET, terephthalic acid, and ethylene glycol is suggested. Moreover, other PETase candidates potentially having high PET-degrading activities are suggested based on phylogenetic tree analysis of 69 PETase-like proteins

The impact of maternal HIV infection on cord blood lymphocyte subsets and cytokine profile in exposed non-infected newborns

<p>Abstract</p> <p>Background</p> <p>Children born to HIV+ mothers are exposed intra-utero to several drugs and cytokines that can modify the developing immune system, and influence the newborn's immune response to infections and vaccines. We analyzed the relation between the distribution of cord blood lymphocyte subsets and cytokine profile in term newborns of HIV+ mothers using HAART during pregnancy and compared them to normal newborns.</p> <p>Methods</p> <p>In a prospective, controlled study, 36 mother-child pairs from HIV+ mothers and 15 HIV-uninfected mothers were studied. Hematological features and cytokine profiles of mothers at 35 weeks of pregnancy were examined. Maternal and cord lymphocyte subsets as well as B-cell maturation in cord blood were analyzed by flow cytometry. The non-stimulated, as well as BCG- and PHA-stimulated production of IL2, IL4, IL7, IL10, IL12, IFN-γ and TNF-alpha in mononuclear cell cultures from mothers and infants were quantified using ELISA.</p> <p>Results</p> <p>After one year follow-up none of the exposed infants became seropositive for HIV. An increase in B lymphocytes, especially the CD19/CD5+ ones, was observed in cord blood of HIV-exposed newborns. Children of HIV+ hard drug using mothers had also an increase of immature B-cells. Cord blood mononuclear cells of HIV-exposed newborns produced less IL-4 and IL-7 and more IL-10 and IFN-γ in culture than those of uninfected mothers. Cytokine values in supernatants were similar in infants and their mothers except for IFN-γ and TNF-alpha that were higher in HIV+ mothers, especially in drug abusing ones. Cord blood CD19/CD5+ lymphocytes showed a positive correlation with cord IL-7 and IL-10. A higher maternal age and smoking was associated with a decrease of cord blood CD4+ cells.</p> <p>Conclusions</p> <p>in uninfected infants born to HIV+ women, several immunological abnormalities were found, related to the residual maternal immune changes induced by the HIV infection and those associated with antiretroviral treatment. Maternal smoking was associated to changes in cord CD3/CD4 lymphocytes and maternal hard drug abuse was associated with more pronounced changes in the cord B cell line.</p

Interaction between the nasal microbiota and S. pneumoniae in the context of live-attenuated influenza vaccine

Streptococcus pneumoniae is the main bacterial pathogen involved in pneumonia. Pneumococcal acquisition and colonization density is probably affected by viral co-infections, the local microbiome composition and mucosal immunity. Here, we report the interactions between live-attenuated influenza vaccine (LAIV), successive pneumococcal challenge, and the healthy adult nasal microbiota and mucosal immunity using an experimental human challenge model. Nasal microbiota profiles at baseline are associated with consecutive pneumococcal carriage outcome (non-carrier, low-dense and high-dense pneumococcal carriage), independent of LAIV co-administration. Corynebacterium/Dolosigranulum-dominated profiles are associated with low-density colonization. Lowest rates of natural viral co-infection at baseline and post-LAIV influenza replication are detected in the low-density carriers. Also, we detected the fewest microbiota perturbations and mucosal cytokine responses in the low-density carriers compared to non-carriers or high-density carriers. These results indicate that the complete respiratory ecosystem affects pneumococcal behaviour following challenge, with low-density carriage representing the most stable ecological state