Crystallization and preliminary X-ray diffraction analysis of PAT, an acetyltransferase from Sulfolobus solfataricus

PAT is an acetyltransferase from the archaeon Sulfolobus solfataricus that specifically acetylates the chromatin protein Alba. The enzyme was expressed, purified and subsequently crystallized using the sitting-drop vapour-diffusion technique. Native diffraction data were collected to 1.70 angstrom resolution on the BL13C1 beamline of NSRRC from a flash-frozen crystal at 100 K. The crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 44.30, b = 46.59, c = 68.39 angstrom

Free-text keystroke dynamics authentication for Arabic language

This study introduces an approach for user authentication using free-text keystroke dynamics which incorporates text in Arabic language. The Arabic language has completely different characteristics to those of English. The approach followed in this study involves the use of the keyboard's key-layout. The method extracts timing features from specific key-pairs in the typed text. Decision trees were exploited to classify each of the users' data. In parallel for comparison, support vector machines were also used for classification in association with an ant colony optimisation feature selection technique. The results obtained from this study are encouraging as low false accept rates and false reject rates were achieved in the experimentation phase. This signifies that satisfactory overall system performance was achieved by using the typing attributes in the proposed approach, while typing Arabic text

Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT

We describe a protocol to perform fast and non-arbitrary quality control of single-cell RNA sequencing (scRNA-seq) raw data using scKB and COPILOT. scKB is a wrapper script of kallisto and bustools for accelerated alignment and transcript count matrix generation, which runs significantly faster than the popular tool Cell Ranger. COPILOT then offers non-arbitrary background noise removal by comparing distributions of low-quality and high-quality cells. Together, this protocol streamlines the processing workflow and provides an easy entry for new scRNA-seq users. For complete details on the use and execution of this protocol, please refer to Shahan et al. (2022)

The Synthesis and Characterization of LiFeAs and NaFeAs

The newest homologous series of superconducting As-pnictides, LiFeAs (Li111) and NaFeAs (Na111) have been synthesized and investigated. Both crystallize with the layered tetragonal anti-PbFCl-type structure in P4/nmm space group. Polycrystalline samples and single-crystals of Li111 and Na111 display superconducting transitions at ~ 18 K and 12-25 K, respectively. No magnetic order has been found in either compound, although a weak magnetic background is clearly in evidence. The origin of the carriers and the stoichiometric compositions of Li111 and Na111 were explored.Comment: submitted for publication in Physica C special issue on Fe-pnictide

Origin and transformation of light hydrocarbons ascending at an active pockmark on Vestnesa Ridge, Arctic Ocean

We report on the geochemistry of hydrocarbons and pore waters down to 62.5 mbsf, collected by drilling with the MARUM‐MeBo70 and by gravity coring at the Lunde pockmark in the Vestnesa Ridge. Our data document the origin and transformations of volatiles feeding gas emissions previously documented in this region. Gas hydrates are present where a fracture network beneath the pockmark focusses migration of thermogenic hydrocarbons characterized by their C1/C2+ and stable isotopic compositions (δ2H‐CH4, δ13C‐CH4). Measured geothermal gradients (~80°C km‐1) and known formation temperatures (>70°C) suggest that those hydrocarbons are formed at depths >800 mbsf. A combined analytical/modeling approach, including concentration and isotopic mass balances, reveals that pockmark sediments experience diffuse migration of thermogenic hydrocarbons. However, at sites without channeled flow this appears to be limited to depths > ~50 mbsf. At all sites we document a contribution of microbial methanogenesis to the overall carbon cycle that includes a component of secondary carbonate reduction (CR) – i.e. reduction of dissolved inorganic carbon (DIC) generated by anaerobic oxidation of methane (AOM) in the uppermost methanogenic zone. AOM and CR rates are spatially variable within the pockmark and are highest at high‐flux sites. These reactions are revealed by δ13C‐DIC depletions at the sulfate‐methane interface at all sites. However, δ13C‐CH4 depletions are only observed at the low methane flux sites because changes in the isotopic composition of the overall methane pool are masked at high‐flux sites. 13C‐depletions of TOC suggest that at seeps sites, methane‐derived carbon is incorporated into de novo synthesized biomass

Exact Hypersurface-Homogeneous Solutions in Cosmology and Astrophysics

A framework is introduced which explains the existence and similarities of most exact solutions of the Einstein equations with a wide range of sources for the class of hypersurface-homogeneous spacetimes which admit a Hamiltonian formulation. This class includes the spatially homogeneous cosmological models and the astrophysically interesting static spherically symmetric models as well as the stationary cylindrically symmetric models. The framework involves methods for finding and exploiting hidden symmetries and invariant submanifolds of the Hamiltonian formulation of the field equations. It unifies, simplifies and extends most known work on hypersurface-homogeneous exact solutions. It is shown that the same framework is also relevant to gravitational theories with a similar structure, like Brans-Dicke or higher-dimensional theories.Comment: 41 pages, REVTEX/LaTeX 2.09 file (don't use LaTeX2e !!!) Accepted for publication in Phys. Rev.

Shaking Table Test of the Taiwanese Traditional Dieh-Dou Timber Frame

This article attempts to explore the dynamic behavior of traditional Dieh-Dou timber structure under different combinations of structural forms and vertical loads. Using time-history record (TCU 084) from the Chi-Chi earthquake, two semi full-scale specimens (Symmetric and Asymmetric) were tested. Results showed that the Symmetric specimen tends to be damaged more easily and faster than the Asymmetric one. Damage pattern generally begins from the bottom Dou members and subsequently spreading upwards to the upper Dou, horizontal Gong members, and adjoining Shu members. Friction force between the contact surfaces is crucial towards the maintenance of overall structure. Increase vertical loadings have significant effect on the natural frequencies and global stiffness of the structure. Using the Single-Degree-Of-Freedom (SDOF) system, the derived stiffness is generally in good agreement with the dynamic results of both forms. This study suggests that the effects of increasing vertical loadings should be taken into consideration for future evaluation

Report on Toyota/Prius Motor Torque Capability, Torque Property, No-Load Back EMF, and Mechanical Losses, Revised May 2007

In today's hybrid vehicle market, the Toyota/Prius drive system is currently considered the leader in electrical, mechanical, and manufacturing innovations. It is significant that in today's marketplace, Toyota is able to manufacture and sell the vehicle for a profit. This project's objective is to test the torque capability of the 2004 Prius motor and to analyze the torque properties relating to the rotor structure. The tested values of no-load back electromotive force (emf) and mechanical losses are also presented

Regeneration of soybean (Glycine max L. Merrill) through direct somatic embryogenesis from the immature embryonic shoot tip

We describe here a simple and efficient system of soybean (Glycine max L. Merrill) regeneration through direct somatic embryogenesis by using immature embryonic shoot tips (IEST) as explants. The cultivar Kaohsiung 10 (cv. K10) used in this study did not show embryogenic response either from mature seed-derived explants (cotyledon, embryonic tip, leaf, shoot and root) or immature cotyledons. However, it showed a high percentage (55.8%) of somatic embryo (SEm) formation from the IEST excised 2-3 wk after flowering, thus indicating the crucial roles of type and age of explants. The IEST put forth primary SEm after 2 mo of culturing on Murashige and Skoog (MS) medium supplemented with 6% sucrose, 164.8 A mu M 2,4-dichlorophenoxyacetic acid (2,4-D), 5 mM asparagine and 684 A mu M glutamine. Subsequently, secondary SEm were developed 1 mo after culturing on MS medium containing 123.6 A mu M 2,4-D and 3% sucrose. Cotyledonary embryos were induced on MS medium supplemented with 0.5% activated charcoal after 1 mo. The embryos were desiccated for 72-96 h on sterile Petri dishes and regenerated on hormone-free MS medium. Plantlets with well-developed shoots and roots were obtained within 5-6 mo of culturing of IEST. The SEm-derived plants were morphologically normal and fertile. Various parameters thought to be responsible for efficient regeneration of soybean through somatic embryogenesis are discussed. To our knowledge, this is the first report to employ IEST as explants for successful direct somatic embryogenesis in soybean