Two-particle renormalizations in many-fermion perturbation theory: Importance of the Ward identity

We analyze two-particle renormalizations within many-fermion perturbation expansion. We show that present diagrammatic theories suffer from lack of a direct diagrammatic control over the physical two-particle functions. To rectify this we introduce and prove a Ward identity enabling an explicit construction of the self-energy from a given two-particle irreducible vertex. Approximations constructed in this way are causal, obey conservation laws and offer an explicit diagrammatic control of singularities in dynamical two-particle functions.Comment: REVTeX4, 4 pages, 2 EPS figure

Two phase aqueous extraction of whey proteins in a polyethylene glycol - arabinogalactan system

The whey protein separation potential of aqueous two-phase systems of arabinogalactan [AG] (Lonza FiberAidTM) and polyethylene glycol [PEG], buffered with 10 mmol/g phosphate or citrate buffer, was studied. 100 mmol/g potassium chloride [KCl] was added as required. Previously-published phase equilibrium results were verified and the absorbance of whey protein isolate [WPI] in an AG-PEG solution was measured. The effect of pH, KCl concentration, initial WPI concentrations and upper to lower phase mass ratios on whey partitioning was studied. The best separation system contained 17.20% (w/w) AG, 7.20% (w/w) PEG, 10 mmol citrate buffer (pH 5.4) and 100 mmol KCl per gram of total system. The upper to lower phase mass and volume ratios were 1:1 and 16:11 respectively. Approximately 12 mg (mainly α-lactalbumin) of the 20 mg WPI added partitioned into the AG-rich upper phase. This system has potential to reduce chromatographic requirements in large scale separation of protein mixtures

Fish powder as a low-cost component in media for producing bacterial cellulose

Some bacteria can produce extracellular bacterial cellulose (BC). This polysaccharide is chemically identical to cellulose produced by plants but has no associated lignin and hemicelluloses. The unique mechanical properties, chemical stability and purity allow BC to be exploited for a range of biomedical applications. However, medium costs limit commercial BC production. The suitability of using fish powder as a low-cost media component for producing BC by submerged culture of Gluconacetobacter xylinus in shake flasks was investigated. Fish powder was made by drying and grinding Koi carp (Cyprinus carpio), a pest fish in New Zealand waterways. Fermentations were done at 30oC in a growth medium containing 50 g/L glucose, the required minerals, and either 5 g/L yeast extract or 15 g/L fish powder, The BC yield on both yeast extract and fish powder was 0.04 g/g glucose, demonstrating fish powder was a suitable low cost ingredient for supplying nitrogen and amino acids in the media

Work placement reports: Student perceptions

Engineering students complete work placement reports after being on placement in industry, the aim is to increase work place learning and to increase students understanding about the placement, themselves, career direction and skills obtained. Third and fourth year engineering students perceptions on their report writing experience, academic feedback quality, and the effect of completing work placement reports on their learning and report writing ability, were surveyed. Third year students enjoyed the experience more than fourth year students and perceived greater benefits. Fourth year student opinion was mixed, reflecting greater experience and cynicism. Fourth year students rated feedback from academics higher than the third years, perhaps because their reports were more interesting for the academics. The fourth year students were more cynical on the benefits of reflecting and reviewing what they had learned, and many considered this was not important for being an engineer

Protein associated with SMAD1 (PAWS1/FAM83G) is a substrate for type I bone morphogenetic protein receptors and modulates bone morphogenetic protein signalling

Bone morphogenetic proteins (BMPs) control multiple cellular processes in embryos and adult tissues. BMPs signal through the activation of type I BMP receptor kinases, which then phosphorylate SMADs 1/5/8. In the canonical pathway, this triggers the association of these SMADs with SMAD4 and their translocation to the nucleus, where they regulate gene expression. BMPs can also signal independently of SMAD4, but this pathway is poorly understood. Here, we report the discovery and characterization of PAWS1/FAM83G as a novel SMAD1 interactor. PAWS1 forms a complex with SMAD1 in a SMAD4-independent manner, and BMP signalling induces the phosphorylation of PAWS1 through BMPR1A. The phosphorylation of PAWS1 in response to BMP is essential for activation of the SMAD4-independent BMP target genes NEDD9 and ASNS. Our findings identify PAWS1 as the first non-SMAD substrate for type I BMP receptor kinases and as a novel player in the BMP pathway. We also demonstrate that PAWS1 regulates the expression of several non-BMP target genes, suggesting roles for PAWS1 beyond the BMP pathway

Deconstructing Interrupts with Ara

The emulation of DHTs is a natural issue. After years of important research into lambda calculus, we demonstrate the refinement of multicast frameworks. In order to answer this challenge, we disprove that despite the fact that spreadsheets and kernels are mostly incompatible, 128 bit architectures and active networks are regularly incompatible

Combining Syntactic and Semantic Bidirectionalization

Matsuda et al. [2007, ICFP] and Voigtlander [2009, POPL] introduced two techniques that given a source-to-view function provide an update propagation function mapping an original source and an updated view back to an updated source, subject to standard consistency conditions. Being fundamentally different in approach, both techniques have their respective strengths and weaknesses. Here we develop a synthesis of the two techniques to good effect. On the intersection of their applicability domains we achieve more than what a simple union of applying the techniques side by side deliver

Dynamic scaling regimes of collective decision making

We investigate a social system of agents faced with a binary choice. We assume there is a correct, or beneficial, outcome of this choice. Furthermore, we assume agents are influenced by others in making their decision, and that the agents can obtain information that may guide them towards making a correct decision. The dynamic model we propose is of nonequilibrium type, converging to a final decision. We run it on random graphs and scale-free networks. On random graphs, we find two distinct regions in terms of the "finalizing time" -- the time until all agents have finalized their decisions. On scale-free networks on the other hand, there does not seem to be any such distinct scaling regions

USP15 targets ALK3/BMPR1A for deubiquitylation to enhance bone morphogenetic protein signalling

Protein kinase ALK3/BMPR1A mediates bone morphogenetic protein (BMP) signalling through phosphorylation and activation of SMADs 1/5/8. SMAD6, a transcriptional target of BMP, negatively regulates the BMP pathway by recruiting E3 ubiquitin ligases and targeting ALK3 for ubiquitin-mediated degradation. Here, we identify a deubiquitylating enzyme USP15 as an interactor of SMAD6 and ALK3. We show that USP15 enhances BMP-induced phosphorylation of SMAD1 by interacting with and deubiquitylating ALK3. RNAi-mediated depletion of USP15 increases ALK3 K48-linked polyubiquitylation, and reduces both BMP-induced SMAD1 phosphorylation and transcription of BMP target genes. We also show that loss of USP15 expression from mouse myoblast cells inhibits BMP-induced osteoblast differentiation. Furthermore, USP15 modulates BMP-induced phosphorylation of SMAD1 and transcription during Xenopus embryogenesis