Moduli Spaces for D-branes at the Tip of a Cone

For physicists: We show that the quiver gauge theory derived from a Calabi-Yau cone via an exceptional collection of line bundles on the base has the original cone as a component of its classical moduli space. For mathematicians: We use data from the derived category of sheaves on a Fano surface to construct a quiver, and show that its moduli space of representations has a component which is isomorphic to the anticanonical cone over the surface.Comment: 8 page

Structure of human transthyretin complexed with bromophenols: a new mode of binding

The binding of two organohalogen substances, pentabromophenol (PBP) and 2,4,6-tribromophenol (TBP), to human transthyretin (TTR), a thyroid hormone transport protein, has been studied by in vitro competitive binding assays and by X-ray crystallography. Both compounds bind to TTR with high affinity, in competition with the natural ligand thyroxine (

Comment on "Optical Response of Strongly Coupled Nanopraticles in Dimer Arrays" (Phys. Rev. B 71(4), 045404, 2005)

I have re-calculated the extinction spectra of aggregates of two silver nanospheres shown in Figs.~2 and 3 of Ref.~8. I have used the approximate method of images according to Ref.~8 and an exact numerical technique. I have found that the three sets of data (those I have obtained by the method of images, the numerical results, and the results published in Ref.~8) do not coincide. In this Comment, I discuss the reasons for these discrepancies and the general applicability of the method of images to the quasi-static electromagnetic problem of two interacting nanospheres.Comment: 4 pages, 4 figures, submitted to Phys. Rev.

Winding effects on brane/anti-brane pairs

We study a brane/anti-brane configuration which is separated along a compact direction by constructing a tachyon effective action which takes into account transverse scalars. Such an action is relevant in the study of HQCD model of Sakai and Sugimoto of chiral symmetry breaking, where the size of the compact circle sets the confinement scale. Our approach is motivated by string theory orbifold constructions and gives a route to model inhomogeneous tachyon decay. We illustrate the techniques involved with a relatively simple example of a harmonic oscillator on a circle. We will then repeat the analysis for the Sakai-Sugimoto model and show that by integrating out the winding modes will provide us with a renormalized action with a lower energy than that of truncating to zero winding sector.Comment: 21 pages, 3 figures. v3: discussion and references added, published versio

Lectures on Non-BPS Dirichlet branes

A comprehensive introduction to the boundary state approach to Dirichlet branes is given. Various examples of BPS and non-BPS Dirichlet branes are discussed. In particular, the non-BPS states in the duality of Type IIA on K3 and the heterotic string on T4 are analysed in detail.Comment: 46 pages, 5 figures, LaTeX; lectures given at the TMR network school on `Quantum aspects of gauge theories, supersymmetry and quantum gravity', Torino, 26 January - 2 February 2000, and at the `Spring workshop on Superstrings and related matters', Trieste, 27 March - 4 April 2000; references adde

Generalized Paraxial Ray Trace Procedure Derived from Geodesic Deviation

Paraxial ray tracing procedures have become widely accepted techniques for acoustic models in seismology and underwater acoustics. To date a generic form of these procedures including fluid motion and time dependence has not appeared in the literature. A detailed investigation of the characteristic curves of the equations of hydrodynamics allows for an immediate generalization of the procedure to be extracted from the equation form geodesic deviation. The general paraxial ray trace equations serve as an ideal supplement to ordinary ray tracing in predicting the deformation of acoustic beams in random environments. The general procedure is derived in terms of affine parameterization and in a coordinate time parameterization ideal for application to physical acoustic ray propagation. The formalism is applied to layered media, where the deviation equation reduces to a second order differential equation for a single field with a general solution in terms of a depth integral along the ray path. Some features are illustrated through special cases which lead to exact solutions in terms of either ordinary or special functions.Comment: Original; 40 pages (double spaced), 1 figure Replaced version; 36 pages single spaced, 7 figures. Expanded content; Complete derivation of the equations from the equations of hydrodynamics, introduction of an auxiliary basis for three dimensional wave-front modeling. Typos in text and equations correcte

A Tuned and Scalable Fast Multipole Method as a Preeminent Algorithm for Exascale Systems

Among the algorithms that are likely to play a major role in future exascale computing, the fast multipole method (FMM) appears as a rising star. Our previous recent work showed scaling of an FMM on GPU clusters, with problem sizes in the order of billions of unknowns. That work led to an extremely parallel FMM, scaling to thousands of GPUs or tens of thousands of CPUs. This paper reports on a a campaign of performance tuning and scalability studies using multi-core CPUs, on the Kraken supercomputer. All kernels in the FMM were parallelized using OpenMP, and a test using 10^7 particles randomly distributed in a cube showed 78% efficiency on 8 threads. Tuning of the particle-to-particle kernel using SIMD instructions resulted in 4x speed-up of the overall algorithm on single-core tests with 10^3 - 10^7 particles. Parallel scalability was studied in both strong and weak scaling. The strong scaling test used 10^8 particles and resulted in 93% parallel efficiency on 2048 processes for the non-SIMD code and 54% for the SIMD-optimized code (which was still 2x faster). The weak scaling test used 10^6 particles per process, and resulted in 72% efficiency on 32,768 processes, with the largest calculation taking about 40 seconds to evaluate more than 32 billion unknowns. This work builds up evidence for our view that FMM is poised to play a leading role in exascale computing, and we end the paper with a discussion of the features that make it a particularly favorable algorithm for the emerging heterogeneous and massively parallel architectural landscape

Algebraic Geometry Realization of Quantum Hall Soliton

Using Iqbal-Netzike-Vafa dictionary giving the correspondence between the H$_{2}$ homology of del Pezzo surfaces and p-branes, we develop a new way to approach system of brane bounds in M-theory on $\mathbb{S}^{1}$. We first review the structure of ten dimensional quantum Hall soliton (QHS) from the view of M-theory on $\mathbb{S}^{1}$. Then, we show how the D0 dissolution in D2-brane is realized in M-theory language and derive the p-brane constraint eqs used to define appropriately QHS. Finally, we build an algebraic geometry realization of the QHS in type IIA superstring and show how to get its type IIB dual. Others aspects are also discussed. Keywords: Branes Physics, Algebraic Geometry, Homology of Curves in Del Pezzo surfaces, Quantum Hall Solitons.Comment: 19 pages, 12 figure

Engineering Electromagnetic Properties of Periodic Nanostructures Using Electrostatic Resonances

Electromagnetic properties of periodic two-dimensional sub-wavelength structures consisting of closely-packed inclusions of materials with negative dielectric permittivity $\epsilon$ in a dielectric host with positive $\epsilon_h$ can be engineered using the concept of multiple electrostatic resonances. Fully electromagnetic solutions of Maxwell's equations reveal multiple wave propagation bands, with the wavelengths much longer than the nanostructure period. It is shown that some of these bands are described using the quasi-static theory of the effective dielectric permittivity $\epsilon_{qs}$, and are independent of the nanostructure period. Those bands exhibit multiple cutoffs and resonances which are found to be related to each other through a duality condition. An additional propagation band characterized by a negative magnetic permeability develops when a magnetic moment is induced in a given nano-particle by its neighbors. Imaging with sub-wavelength resolution in that band is demonstrated