Targeting and introduction of Groundnut improved cultivars in Odisha state of India

Groundnut is the major oilseed crop in India grown in an area of 4.93 m ha during 2010 (FAOSTAT, 2012). It contributes about 30% to the edible oil basket of the country. The South Asia has more than 7 million ha (31% of world total) under groundnut, roughly 83% of this is in India. The country has lost 4.62 m ha of groundnut area to other competing crops like soybean, maize and Bt. cotton during the last decade at an annual rate of 3.48% mainly because of cheaper imports of other edible oils, which depressed groundnut prices. Though productivity of groundnut was increased by 2.14% during the period, production declined at the rate of 1.14% annually.About 85% of the total groundnut area in the country is sown in the rainy season. Being a rainfed crop, the yield variability across both, growing regions and years is high. The instability measure (CV) was higher in the case of productivity than in the case of area in all the sub-periods (Table-1.1)..

Tissue Tropism in Host Transcriptional Response to Members of the Bovine Respiratory Disease Complex.

Bovine respiratory disease (BRD) is the most common infectious disease of beef and dairy cattle and is characterized by a complex infectious etiology that includes a variety of viral and bacterial pathogens. We examined the global changes in mRNA abundance in healthy lung and lung lesions and in the lymphoid tissues bronchial lymph node, retropharyngeal lymph node, nasopharyngeal lymph node and pharyngeal tonsil collected at the peak of clinical disease from beef cattle experimentally challenged with either bovine respiratory syncytial virus, infectious bovine rhinotracheitis, bovine viral diarrhea virus, Mannheimia haemolytica or Mycoplasma bovis. We identified signatures of tissue-specific transcriptional responses indicative of tropism in the coordination of host's immune tissue responses to infection by viral or bacterial infections. Furthermore, our study shows that this tissue tropism in host transcriptional response to BRD pathogens results in the activation of different networks of response genes. The differential crosstalk among genes expressed in lymphoid tissues was predicted to be orchestrated by specific immune genes that act as 'key players' within expression networks. The results of this study serve as a basis for the development of innovative therapeutic strategies and for the selection of cattle with enhanced resistance to BRD

Genome-Based Microsatellite Development in the Culex pipiens Complex and Comparative Microsatellite Frequency with Aedes aegypti and Anopheles gambiae

Mosquitoes in the Culex pipiens complex are among the most medically important vectors for human disease worldwide and include major vectors for lymphatic filariasis and West Nile virus transmission. However, detailed genetic studies in the complex are limited by the number of genetic markers available. Here, we describe methods for the rapid and efficient identification and development of single locus, highly polymorphic microsatellite markers for Cx. pipiens complex mosquitoes via in silico screening of the Cx. quinquefasciatus genome sequence.Six lab colonies representing four Cx. pipiens and two Cx. quinquefasciatus populations were utilized for preliminary assessment of 38 putative loci identified within 16 Cx. quinquefasciatus supercontig assemblies (CpipJ1) containing previously mapped genetic marker sequences. We identified and validated 12 new microsatellite markers distributed across all three linkage groups that amplify consistently among strains representing the complex. We also developed four groups of 3-5 microsatellite loci each for multiplex-ready PCR. Field collections from three cities in Indiana were used to assess the multiplex groups for their application to natural populations. All were highly polymorphic (Mean  = 13.0 alleles) per locus and reflected high polymorphism information content (PIC) (Mean  = 0.701). Pairwise F(ST) indicated population structuring between Terre Haute and Fort Wayne and between Terre Haute and Indianapolis, but not between Fort Wayne and Indianapolis. In addition, we performed whole genome comparisons of microsatellite motifs and abundance between Cx. quinquefasciatus and the primary vectors for dengue virus and malaria parasites, Aedes aegypti and Anopheles gambiae, respectively.We demonstrate a systematic approach for isolation and validation of microsatellites for the Cx. pipiens complex by direct screen of the Cx. quinquefasciatus genome supercontig assemblies. The genome density of microsatellites is greater in Cx. quinquefasciatus (0.26%) than in Ae. aegypti (0.14%), but considerably lower than in An. gambiae (0.77%)

Status of Adoption of Improved Groundnut Technologies in Odisha State

Paddy is the dominant staple crop in the state of Odisha in India. Groundnut, sesame, mustard and niger are the major oilseed crops cultivated in the state. Groundnut occupied about 34% of total oilseed area and contributed more than 68% of total oilseeds production during the triennium ending (TE) 2017-18. The area under groundnut declined from 318,000 ha to 210,000 ha between TE 1995-96 and 2017-18 (25 years) (Behura et al 2014, Odisha Agricultural Statistics - various issues. https://agriodisha.nic.in/Home/staticstics). It has registered a negative growth rate (cropped area) of 0.93% per annum. Production too declined from 466,000 tons to 374,000 tons during the same period. However, groundnut productivity saw an uptrend from 1465 kg/ha to 1783 kg/ha due to the introduction of modern high-yielding varieties. Figure 1 shows the trends in area, production and productivity of groundnut in the state

Effect of climatic variables on production and reproduction traits of colored broiler breeder poultry

Aim: The present study was conducted to investigate the important climatic variables affecting production and reproduction in a broiler breeder flock. Materials and Methods: The experiment was conducted for a period of 1 year on colored synthetic female line male and female poultry birds. 630 female progeny and 194 male progenies from 69 sires and 552 dams produced in four consecutive hatches at an interval of 10 days were used for the present study. Each of the seven, body weight and reproduction traits were regressed with nine environmental variables. Initially, the data were subjected to hatch effect and sire effect corrections through best linear unbiased estimator (BLUE) method and, then, multiple linear regressions of environmental variables on each trait were applied. Result: The overall regression was significant (p<0.01) in all traits except 20 week age body weight of females. The R2 value ranged from 0.12 to 0.90 for the traits. Regression coefficient values (b values) for maximum temperature and minimum temperature were significant (p<0.05) on 5th week age body weight of males. Similarly, evaporation and morning relative humidity (RH) was significant (p<0.05) for 5th week age body weight of females. Almost all b values were significant (p<0.05) for egg production up to 40 week age. The b values representing rainfall, morning RH, afternoon RH, sunshine hours, and rainy days were significant (p<0.05) on bodyweight at 20 week age. All environmental variables except maximum temperature and minimum temperature were significant (p<0.05) on body weight of females at 20 weeks of age. Age at sexual maturity was regressed significantly (p<0.05) with evaporation, afternoon RH whereas, egg shape index was regressed significantly (p<0.05) with a maximum temperature, evaporation and afternoon RH. Conclusion: The result indicated that various environmental variables play a significant role in production and reproduction of breeder broiler poultry. Controlling these variables in adverse weathers may increase production

Selective detection of fluoride and hydrogen sulfate anions by pyrimidine-based fluorescence chemosensor

1809-1813The binding and sensing abilities of pyrimidine based fluorescence chemosensor L towards different anions such as F-, Cl-, Br-, I-, NO3-, ClO4-, H2PO4- and HSO4- have been examined by fluorescence spectroscopy in DMSO-H2O (7: 3, v/v). Upon successive addition of various anions to DMSO-H2O solutions of L; quenching in emission fluorescence is observed at 480 nm. Analysis of fluorescence emission changes suggested the formation of 1:1 complex of L with the anions. From the fluorescence binding constant data, it is found that L form strong complexes with F- and HSO4- ions through H-bonding interactions. The selective response of F- over other halides and HSO4- amongst other oxo-anions towards L may be explained on the basis of photo-induced electron transfer process

Selective detection of fluoride and hydrogen sulfate anions by pyrimidine-based fluorescence chemosensor

The binding and sensing abilities of pyrimidine based fluorescence chemosensor L towards different anions such as F-, Cl-, Br-, I-, NO3-, ClO4-, H2PO4- and HSO4- have been examined by fluorescence spectroscopy in DMSO-H2O (7: 3, v/v). Upon successive addition of various anions to DMSO-H2O solutions of L; quenching in emission fluorescence is observed at 480 nm. Analysis of fluorescence emission changes suggested the formation of 1:1 complex of L with the anions. From the fluorescence binding constant data, it is found that L form strong complexes with F- and HSO4- ions through H-bonding interactions. The selective response of F- over other halides and HSO4- amongst other oxo-anions towards L may be explained on the basis of photo-induced electron transfer process

Mitochondrial Pseudogenes in the Nuclear Genomes of Drosophila

Mitochondrial pseudogenes in nuclear chromosomes (numts) have been detected in the genomes of a diverse range of eukaryotic species. However, the numt content of different genomes and their properties is not uniform, and study of these differences provides insight into the mechanisms and dynamics of genome evolution in different organisms. In the genus Drosophila, numts have previously only been identified on a genome-wide scale in the melanogaster subgroup. The present study extends the identification to 11 species of the Drosophila genus. We identify a total of 302 numts and show that the numt complement is highly variable in Drosophilids, ranging from just 4 in D. melanogaster to 67 in D. willistoni, broadly correlating with genome size. Many numts have undergone large-scale rearrangements in the nucleus, including interruptions, inversions, deletions and duplications of sequence of variable size. Estimating the age of the numts in the nucleus by phylogenetic tree reconstruction reveals the vast majority of numts to be recent gains, 90% having arisen on terminal branches of the species tree. By identifying paralogs and counting duplications among the extant numts we estimate that 23% of extant numts arose through post-insertion duplications. We estimate genus average rates of insertion of 0.75 per million years, and a duplication rate of 0.010 duplications per numt per million years

The genomes of two key bumblebee species with primitive eusocial organization

Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation

Characterization of simple sequence repeats (SSRs) from Phlebotomus papatasi (Diptera: Psychodidae) expressed sequence tags (ESTs)

<p>Abstract</p> <p>Background</p> <p><it>Phlebotomus papatasi </it>is a natural vector of <it>Leishmania major</it>, which causes cutaneous leishmaniasis in many countries. Simple sequence repeats (SSRs), or microsatellites, are common in eukaryotic genomes and are short, repeated nucleotide sequence elements arrayed in tandem and flanked by non-repetitive regions. The enrichment methods used previously for finding new microsatellite loci in sand flies remain laborious and time consuming; <it>in silico </it>mining, which includes retrieval and screening of microsatellites from large amounts of sequence data from sequence data bases using microsatellite search tools can yield many new candidate markers.</p> <p>Results</p> <p>Simple sequence repeats (SSRs) were characterized in <it>P. papatasi </it>expressed sequence tags (ESTs) derived from a public database, National Center for Biotechnology Information (NCBI). A total of 42,784 sequences were mined, and 1,499 SSRs were identified with a frequency of 3.5% and an average density of 15.55 kb per SSR. Dinucleotide motifs were the most common SSRs, accounting for 67% followed by tri-, tetra-, and penta-nucleotide repeats, accounting for 31.1%, 1.5%, and 0.1%, respectively. The length of microsatellites varied from 5 to 16 repeats. Dinucleotide types; AG and CT have the highest frequency. Dinucleotide SSR-ESTs are relatively biased toward an excess of (AX)n repeats and a low GC base content. Forty primer pairs were designed based on motif lengths for further experimental validation.</p> <p>Conclusion</p> <p>The first large-scale survey of SSRs derived from <it>P. papatasi </it>is presented; dinucleotide SSRs identified are more frequent than other types. EST data mining is an effective strategy to identify functional microsatellites in <it>P. papatasi</it>.</p