Interannual variability of the outflow of Weddell Sea Bottom Water

The Weddell Sea Bottom Water (WSBW) export from 1999 to 2019 displays distinct seasonal and interannual variability. From 2014 into 2017 a marked salinity decrease was recorded, with the lowest salinity, 34.615, attained in early 2016. The reduced salinity is derived from the V‐shaped trough formed by a double front along the shelf break of the Weddell Gyre's western boundary, which is filled with a blend of surface water and modified Weddell Deep Water. We estimate that when the V‐shaped apex attains a depth of greater than ~700 m, the thermobaric effect promotes its descent into the WSBW. We propose that this occurred during anomalously strong cyclonic wind stress curl over the Weddell Gyre from 2014 into 2017, which increased the intensity of the gyre and its western boundary current, deepening the V‐shape trough. The WSBW salinity increased to its prior to 2014 values as the wind stress relaxed in 2018. Plain Language Summary: The Weddell Sea Bottom Water (WSBW) emanating from the western Weddell Sea impacts the characteristics of the Antarctic Bottom Water that ventilates the deep ocean. From 2014 to 2017 the WSBW attained its lowest salinity values since we began monitoring the outflow in 1999. We present evidence that the change was a consequence of a wind‐induced spin‐up of the Weddell Gyre, which increased intensity of the western boundary current of the Weddell Sea enabled relatively low salinity winter surface layer water to descend into the bottom layer, through the thermobaric effect. Since 2017 the salinity of the WSBW returned to the long‐term average, as the wind stress forcing relaxed

Dissolved iron in the Arctic shelf seas and surface waters of the Central Arctic Ocean: Impact of Arctic river water and ice-melt

Key Points - DFe in the Arctic shelves and surface is linked to freshwater and alkalinity - Fluvial input main contributor to high DFe, low alkalinity in Central Arctic - Remineralisation and biological depletion determine DFe in the Arctic Shelf Seas Abstract Concentrations of dissolved (10 nM) in the bottom waters of the Laptev Sea shelf may be attributed to either sediment resuspension, sinking of brine or regeneration of DFe in the lower layers. A significant correlation (R2 = 0.60) between salinity and DFe is observed. Using δ18O, salinity ,nutrients and total alkalinity data, the main source for the high (>2 nM) DFe concentrations in the Amundsen and Makarov Basins is identified as (Eurasian) river water, transported with the Transpolar Drift (TPD). On the North American side of the TPD, the DFe concentrations are low ( 4) above the shelf and low ( < 4) off the shelf)

Ocean currents shape the microbiome of Arctic marine sediments

Prokaryote communities were investigated on the seasonally stratified Alaska Beaufort Shelf (ABS). Water and sediment directly underlying water with origin in the Arctic, Pacific or Atlantic oceans were analyzed by pyrosequencing and length heterogeneity-PCR in conjunction with physicochemical and geographic distance data to determine what features structure ABS microbiomes. Distinct bacterial communities were evident in all water masses. Alphaproteobacteria explained similarity in Arctic surface water and Pacific derived water. Deltaproteobacteria were abundant in Atlantic origin water and drove similarity among samples. Most archaeal sequences in water were related to unclassified marine Euryarchaeota. Sediment communities influenced by Pacific and Atlantic water were distinct from each other and pelagic communities. Firmicutes and Chloroflexi were abundant in sediment, although their distribution varied in Atlantic and Pacific influenced sites. Thermoprotei dominated archaea in Pacific influenced sediments and Methanomicrobia dominated in methane-containing Atlantic influenced sediments. Length heterogeneity-PCR data from this study were analyzed with data from methane-containing sediments in other regions. Pacific influenced ABS sediments clustered with Pacific sites from New Zealand and Chilean coastal margins. Atlantic influenced ABS sediments formed another distinct cluster. Density and salinity were significant structuring features on pelagic communities. Porosity co-varied with benthic community structure across sites and methane did not. This study indicates that the origin of water overlying sediments shapes benthic communities locally and globally and that hydrography exerts greater influence on microbial community structure than the availability of methane

A structural interpretation of the effect of GC-content on efficiency of RNA interference

BACKGROUND: RNA interference (RNAi) mediated by small interfering RNAs (siRNAs) or short hairpin RNAs (shRNAs) has become a powerful technique for eukaryotic gene knockdown. siRNA GC-content negatively correlates with RNAi efficiency, and it is of interest to have a convincing mechanistic interpretation of this observation. We here examine this issue by considering the secondary structures for both the target messenger RNA (mRNA) and the siRNA guide strand. RESULTS: By analyzing a unique homogeneous data set of 101 shRNAs targeted to 100 endogenous human genes, we find that: 1) target site accessibility is more important than GC-content for efficient RNAi; 2) there is an appreciable negative correlation between GC-content and RNAi activity; 3) for the predicted structure of the siRNA guide strand, there is a lack of correlation between RNAi activity and either the stability or the number of free dangling nucleotides at an end of the structure; 4) there is a high correlation between target site accessibility and GC-content. For a set of representative structural RNAs, the GC content of 62.6% for paired bases is significantly higher than the GC content of 38.7% for unpaired bases. Thus, for a structured RNA, a region with higher GC content is likely to have more stable secondary structure. Furthermore, by partial correlation analysis, the correlation for GC-content is almost completely diminished, when the effect of target accessibility is controlled. CONCLUSION: These findings provide a target-structure-based interpretation and mechanistic insight for the effect of GC-content on RNAi efficiency

Demographic History of Indigenous Populations in Mesoamerica Based on mtDNA Sequence Data

The genetic characterization of Native American groups provides insights into their history and demographic events. We sequenced the mitochondrial D-loop region (control region) of 520 samples from eight Mexican indigenous groups. In addition to an analysis of the genetic diversity, structure and genetic relationship between 28 Native American populations, we applied Bayesian skyline methodology for a deeper insight into the history of Mesoamerica. AMOVA tests applying cultural, linguistic and geographic criteria were performed. MDS plots showed a central cluster of Oaxaca and Maya populations, whereas those from the North and West were located on the periphery. Demographic reconstruction indicates higher values of the effective number of breeding females (Nef) in Central Mesoamerica during the Preclassic period, whereas this pattern moves toward the Classic period for groups in the North and West. Conversely, Nef minimum values are distributed either in the Lithic period (i.e. founder effects) or in recent periods (i.e. population declines). The Mesomerican regions showed differences in population fluctuation as indicated by the maximum Inter-Generational Rate (IGRmax): i) Center-South from the lithic period until the Preclassic; ii) West from the beginning of the Preclassic period until early Classic; iii) North characterized by a wide range of temporal variation from the Lithic to the Preclassic. Our findings are consistent with the genetic variations observed between central, South and Southeast Mesoamerica and the North-West region that are related to differences in genetic drift, structure, and temporal survival strategies (agriculture versus hunter-gathering, respectively). Interestingly, although the European contact had a major negative demographic impact, we detect a previous decline in Mesoamerica that had begun a few hundred years before

Transcript copy number estimation using a mouse whole-genome oligonucleotide microarray

The ability to quantitatively measure the expression of all genes in a given tissue or cell with a single assay is an exciting promise of gene-expression profiling technology. An in situ-synthesized 60-mer oligonucleotide microarray designed to detect transcripts from all mouse genes was validated, as well as a set of exogenous RNA controls derived from the yeast genome (made freely available without restriction), which allow quantitative estimation of absolute endogenous transcript abundance

Borealization of the Arctic Ocean in Response to Anomalous Advection From Sub-Arctic Seas

An important yet still not well documented aspect of recent changes in the Arctic Ocean is associated with the advection of anomalous sub-Arctic Atlantic- and Pacific-origin waters and biota into the polar basins, a process which we refer to as borealization. Using a 37-year archive of observations (1981-2017) we demonstrate dramatically contrasting regional responses to atlantification (that part of borealization related to progression of anomalies from the Atlantic sector of sub-Arctic seas into the Arctic Ocean) and pacification (the counterpart of atlantification associated with influx of anomalous Pacific waters). Particularly, we show strong salinification of the upper Eurasian Basin since 2000, with attendant reductions in stratification, and potentially altered nutrient fluxes and primary production. These changes are closely related to upstream conditions. In contrast, pacification is strongly manifested in the Amerasian Basin by the anomalous influx of Pacific waters, creating conditions favorable for increased heat and freshwater content in the Beaufort Gyre halocline and expansion of Pacific species into the Arctic interior. Here, changes in the upper (overlying) layers are driven by local Arctic atmospheric processes resulting in stronger wind/ice/ocean coupling, increased convergence within the Beaufort Gyre, a thickening of the fresh surface layer, and a deepening of the nutricline and deep chlorophyll maximum. Thus, a divergent (Eurasian Basin) gyre responds altogether differently than does a convergent (Amerasian Basin) gyre to climate forcing. Available geochemical data indicate a general decrease in nutrient concentrations Arctic-wide, except in the northern portions of the Makarov and Amundsen Basins and northern Chukchi Sea and Canada Basin. Thus, changes in the circulation pathways of specific water masses, as well as the utilization of nutrients in upstream regions, may control the availability of nutrients in the Arctic Ocean. Model-based evaluation of the trajectory of the Arctic climate system into the future suggests that Arctic borealization will continue under scenarios of global warming. Results from this synthesis further our understanding of the Arctic Ocean\u27s complex and sometimes non-intuitive Arctic response to climate forcing by identifying new feedbacks in the atmosphere-ice-ocean system in which borealization plays a key role

Weakening of cold halocline layer exposes sea ice to oceanic heat in the eastern Arctic Ocean

A 15-yr duration record of mooring observations from the eastern (>70°E) Eurasian Basin (EB) of the Arctic Ocean is used to show and quantify the recently increased oceanic heat flux from intermediate-depth (~150–900 m) warm Atlantic Water (AW) to the surface mixed layer and sea ice. The upward release of AW heat is regulated by the stability of the overlying halocline, which we show has weakened substantially in recent years. Shoaling of the AW has also contributed, with observations in winter 2017–18 showing AW at only 80 m depth, just below the wintertime surface mixed layer, the shallowest in our mooring records. The weakening of the halocline for several months at this time implies that AW heat was linked to winter convection associated with brine rejection during sea ice formation. This resulted in a substantial increase of upward oceanic heat flux during the winter season, from an average of 3–4 W m−2 in 2007–08 to >10 W m−2 in 2016–18. This seasonal AW heat loss in the eastern EB is equivalent to a more than a twofold reduction of winter ice growth. These changes imply a positive feedback as reduced sea ice cover permits increased mixing, augmenting the summer-dominated ice-albedo feedback

Rapid change in freshwater content of the Arctic Ocean

Author Posting. © American Geophysical Union, 2009. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 36 (2009): L10602, doi:10.1029/2009GL037525.The dramatic reduction in minimum Arctic sea ice extent in recent years has been accompanied by surprising changes in the thermohaline structure of the Arctic Ocean, with potentially important impact on convection in the North Atlantic and the meridional overturning circulation of the world ocean. Extensive aerial hydrographic surveys carried out in March–April, 2008, indicate major shifts in the amount and distribution of fresh-water content (FWC) when compared with winter climatological values, including substantial freshening on the Pacific side of the Lomonosov Ridge. Measurements in the Canada and Makarov Basins suggest that total FWC there has increased by as much as 8,500 cubic kilometers in the area surveyed, effecting significant changes in the sea-surface dynamic topography, with an increase of about 75% in steric level difference from the Canada to Eurasian Basins, and a major shift in both surface geostrophic currents and freshwater transport in the Beaufort Gyre.Support for this work was provided by the National Science Foundation Office of Polar Programs under grants 0352687, 0634097 (MGM); 0633979, 0806115 (AP); 0633885, 0352754, 0634226 (MAS, JHM); and 06341222 (MBA)

AECL/US INERI - Development of Inert Matrix Fuels for Plutonium and Minor Actinide Management in Power Reactors -- Fuel Requirements and Down-Select Report

The U.S. Advanced Fuel Cycle Program and the Atomic Energy Canada Ltd (AECL) seek to develop and demonstrate the technologies needed to minimize the overall Pu and minor actinides present in the light water reactor (LWR) nuclear fuel cycles. It is proposed to reuse the Pu from LWR spent fuel both for the energy it contains and to decrease the hazard and proliferation impact resulting from storage of the Pu and minor actinides. The use of fuel compositions with a combination of U and Pu oxide (MOX) has been proposed as a way to recycle Pu and/or minor actinides in LWRs. It has also been proposed to replace the fertile U{sup 238} matrix of MOX with a fertile-free matrix (IMF) to reduce the production of Pu{sup 239} in the fuel system. It is important to demonstrate the performance of these fuels with the appropriate mixture of isotopes and determine what impact there might be from trace elements or contaminants. Previous work has already been done to look at weapons-grade (WG) Pu in the MOX configuration [1][2] and the reactor-grade (RG) Pu in a MOX configuration including small (4000 ppm additions of Neptunium). This program will add to the existing database by developing a wide variety of MOX fuel compositions along with new fuel compositions called inert-matrix fuel (IMF). The goal of this program is to determine the general fabrication and irradiation behavior of the proposed IMF fuel compositions. Successful performance of these compositions will lead to further selection and development of IMF for use in LWRs. This experiment will also test various inert matrix material compositions with and without quantities of the minor actinides Americium and Neptunium to determine feasibility of incorporation into the fuel matrices for destruction. There is interest in the U.S. and world-wide in the investigation of IMF (inert matrix fuels) for scenarios involving stabilization or burn down of plutonium in the fleet of existing commercial power reactors. IMF offer the potential advantage for more efficient destruction of plutonium and minor actinides (MA) relative to MOX fuel. Greater efficiency in plutonium reduction results in greater flexibility in managing plutonium inventories and in developing strategies for disposition of MA, as well as a potential for fuel cycle cost savings. Because fabrication of plutonium-bearing (and MA-bearing) fuel is expensive relative to UO{sub 2} in terms of both capital and production, cost benefit can be realized through a reduction in the number of plutonium-bearing elements required for a given burn rate. In addition, the choice of matrix material may be manipulated either to facilitate fuel recycling or to make plutonium recovery extremely difficult. In addition to plutonium/actinide management, an inert matrix fuel having high thermal conductivity may have operational and safety benefits; lower fuel temperatures could be used to increase operating and safety margins, uprate reactor power, or a combination of both. The CANDU reactor offers flexibility in plutonium management and MA burning by virtue of online refueling, a simple bundle design, and good neutron economy. A full core of inert matrix fuel containing either plutonium or a plutonium-actinide mix can be utilized, with plutonium destruction efficiencies greater than 90%, and high (&gt;60%) actinide destruction efficiencies. The Advanced CANDU Reactor (ACR) could allow additional possibilities in the design of an IMF bundle, since the tighter lattice pitch and light-water coolant reduce or eliminate the need to suppress coolant void reactivity, allowing the center region of the bundle to include additional fissile material and to improve actinide burning. The ACR would provide flexibility for management of plutonium and MA from the existing LWR fleet, and would be complementary to the AFCI program in the U.S. Many of the fundamental principles concerning the use of IMF are nearly identical in LWRs and the ACR, including fuel/coolant compatibility, fuel fabrication, and fuel irradiation behavior. In addition, the U.S. and Canada both have interest in development of Generation IV SCWR (supercritical water reactor) technology, to which this fuel type would be applicable for plutonium and MA management. An inert matrix fuel with high thermal conductivity would be particularly beneficial to any SCWR concept. Given these similarities, it is proposed that a joint project be conducted within the framework of a U.S.-Canada INERI project on IMF. This report will present analysis of the inert matrix fuel compositions of interest for application to US and Canadian light water reactor fuel cycles, report on the development of fabrication procedures for these compositions, and provide an overview of the test and demonstration plan for these fuel systems