Using hyperspectral remote sensing to map grape quality in 'Tempranillo' vineyards affected by iron deficiency chlorosis

The objectives of this work wereto investigate the relationships between chlorophyll a+b concentration in leaves (Cab) and grape composition parameters in vineyards affected by iron chlorosis, andstudy whether the assessment of Cab from hyperspectral remote sensing imagery could be useful to map different potential quality zones in these vineyards.A field trial was conducted in a vineyard with the chlorosis susceptible cultivar. 'Tempranillo', over '110 Richter', located in Northern Spain. Three experimental treatments were applied: 0, 2, and 4 foliar sprayings with a ligninsulphonate derived product (10 % water soluble Fe) in a randomized design with 3 replications. The yield and grape composition parameters at harvest were measured for each base-plot (10x10 m in size), and related with chlorophyll concentration in leaves. On the other hand, a total of 24 'Tempranillo' commercial vineyards were identified for field and airborne data collection with CASI hyperspectral sensor, comprising 103 study areas of 10x10 m in size. A total of 1467 leaves were collected for determining pigment concentration and optical properties. Several narrow-band vegetation indices were calculated from leaf reflectance spectra. Results of trial showed that the lack of pigmentation in leaves was a major factor limiting grape ripening. Significant linear regressions between Cab and total soluble solids concentration and colour density of the must were detected. Estimation of Cab using the image-calculated TCARI/OSAVI through the PROSPECT-rowMCRM model simulation for all study zones, including the specific ligninsulphonate experiment, demonstrated the potential of hyperspectral imagery for mapping Cab in vineyards for chlorosis detection using remote sensing methods. Given the described relationship between Cab and quality parameters in vineyards affected by iron chlorosis, high-spatial resolution imagery with narrow bands might enable the segmentation in areas of potential quality in the framework of precision viticulture.

Comparison of UV irradiances from Aura/Ozone Monitoring Instrument (OMI) with Brewer measurements at El Arenosillo (Spain) – Part 2: Analysis of site aerosol influence

Several validation studies have shown a notable overestimation of the clear sky ultraviolet (UV) irradiance at the Earth's surface derived from satellite sensors such as the Total Ozone Mapping Spectrometer (TOMS) and the Ozone Monitoring Instrument (OMI) with respect to ground-based UV data at many locations. Most of this positive bias is attributed to boundary layer aerosol absorption that is not accounted for in the TOMS/OMI operational UV algorithm. Therefore, the main objective of this study is to analyse the aerosol effect on the bias between OMI erythemal UV irradiance (UVER) and spectral UV (305 nm, 310 nm and 324 nm) surface irradiances and ground-based Brewer spectroradiometer measurements from October 2004 to December 2008 at El Arenosillo station (37.1° N, 6.7° W, 20 m a.s.l.), with meteorological conditions representative of the South-West of Spain. <br><br> The effects of other factors as clouds, ozone and the solar elevation over this intercomparison were analysed in detail in a companion paper (Antón et al., 2010). In that paper the aerosol effects were studied making only a rough evaluation based on aerosol optical depth (AOD) information at 440 nm wavelength (visible range) without applying any correction. We have used the precise information given by single scattering albedo (SSA) from AERONET for the determination of absorbing aerosols which has allowed the correction of the OMI UV data. <br><br> An aerosol correction expression was applied to the OMI operational UV data using two approaches to estimate the UV absorption aerosol optical depth, AAOD. The first approach was based on an assumption of constant SSA value of 0.91. This approach reduces the OMI UVER bias against the reference Brewer data from 13.4% to 8.4%. Second approach uses daily AERONET SSA values reducing the bias only to 11.6%. Therefore we have obtained a 37% and 12% of improvement respectively. For the spectral irradiance at 324 nm, the OMI bias is reduced from 10.5% to 6.98% for constant SSA and to 9.03% for variable SSA. Similar results were obtained for spectral irradiances at 305 nm, and 310 nm. <br><br> Contrary to what was expected, the constant SSA approach has a greater bias reduction than variable SSA, but this is a reasonable result according to the discussion about the reliability of SSA values. Our results reflect the level of accuracy that may be reached at the present time in this type of comparison, which may be considered as satisfactory taking into account the remaining dependence on other factors. Nevertheless, improvements must be accomplished to determine reliable absorbing aerosol properties, which appear as a limiting factor for improving OMI retrievals

Remote sensing detection of nutrient uptake in vineyards using narrow-band hyperspectral imagery

This manuscript delves further into the assessment of narrow-band vegetation indices derived from hyperspectral imagery acquired at 1 m spatial resolution with the Compact Airborne Spectrographic Imager (CASI). Narrow-band indices proposed in this study were assessed as indicators of biochemical and structural parameters in Vitis vinifera L., observing their relationships with foliar variables such as N, P, K, Ca, Fe, Mg and chlorophyll a+b concentration (Ca+b). Hyperspectral indices were assessed to study their capability for vegetation condition monitoring as a function of fertilization treatments applied (basically extracts of Ascophyllum nodosum seaweed and chelates), showing associations with field variables. Narrow-band vegetation indices displayed sensitivity to vineyard growth and condition as a function of seaweed fertilization and other supplementary mineral correctors, such as chelates. This work shows the interest of using new narrow-band hyperspectral remote sensing indices for vineyard monitoring due to their potential to indicate physiological condition.

Internal consistency of the Regional Brewer Calibration Centre for Europe triad during the period 2005–2016

Total ozone column measurements can be made using Brewer spectrophotometers, which are calibrated periodically in intercomparison campaigns with respect to a reference instrument. In 2003, the Regional Brewer Calibration Centre for Europe (RBCC-E) was established at the Izaña Atmospheric Research Center (Canary Islands, Spain), and since 2011 the RBCC-E has transferred its calibration based on the Langley method using travelling standard(s) that are wholly and independently calibrated at Izaña. This work is focused on reporting the consistency of the measurements of the RBCC-E triad (Brewer instruments #157, #183 and #185) made at the Izaña Atmospheric Observatory during the period 2005–2016. In order to study the long-term precision of the RBCC-E triad, it must be taken into account that each Brewer takes a large number of measurements every day and, hence, it becomes necessary to calculate a representative value of all of them. This value was calculated from two different methods previously used to study the long-term behaviour of the world reference triad (Toronto triad) and Arosa triad. Applying their procedures to the data from the RBCC-E triad allows the comparison of the three instruments. In daily averages, applying the procedure used for the world reference triad, the RBCC-E triad presents a relative standard deviation equal to σ&thinsp; = &thinsp;0.41&thinsp;%, which is calculated as the mean of the individual values for each Brewer (σ157&thinsp; = &thinsp;0.362&thinsp;%, σ183&thinsp; = &thinsp;0.453&thinsp;% and σ185&thinsp; = &thinsp;0.428&thinsp;%). Alternatively, using the procedure used to analyse the Arosa triad, the RBCC-E presents a relative standard deviation of about σ&thinsp; = &thinsp;0.5&thinsp;%. In monthly averages, the method used for the data from the world reference triad gives a relative standard deviation mean equal to σ&thinsp; = &thinsp;0.3&thinsp;% (σ157&thinsp; = &thinsp;0.33&thinsp;%, σ183&thinsp; = &thinsp;0.34&thinsp;% and σ185&thinsp; = &thinsp;0.23&thinsp;%). However, the procedure of the Arosa triad gives monthly values of σ&thinsp; = &thinsp;0.5&thinsp;%. In this work, two ozone data sets are analysed: the first includes all the ozone measurements available, while the second only includes the simultaneous measurements of all three instruments. Furthermore, this paper also describes the Langley method used to determine the extraterrestrial constant (ETC) for the RBCC-E triad, the necessary first step toward accurate ozone calculation. Finally, the short-term or intraday consistency is also studied to identify the effect of the solar zenith angle on the precision of the RBCC-E triad.</p

Automatic quantification of cardiomyocyte dimensions and connexin 43 lateralization in fluorescence images

Cardiomyocytes’ geometry and connexin 43 (CX43) amount and distribution are structural features that play a pivotal role in electrical conduction. Their quantitative assessment is of high interest in the study of arrhythmias, but it is usually hampered by the lack of automatic tools. In this work, we propose a software algorithm (Myocyte Automatic Retrieval and Tissue Analyzer, MARTA) to automatically detect myocytes from fluorescent microscopy images of cardiac tissue, measure their morphological features and evaluate the expression of CX43 and its degree of lateralization. The proposed software is based on the generation of cell masks, contouring of individual cells, enclosing of cells in minimum area rectangles and splitting of these rectangles into end-to-end and middle compartments to estimate CX43 lateral-to-total ratio. Application to human ventricular tissue images shows that mean differences between automatic and manual methods in terms of cardiomyocyte length and width are below 4 µm. The percentage of lateral CX43 also agrees between automatic and manual evaluation, with the interquartile range approximately covering from 3% to 30% in both cases. MARTA is not limited by fiber orientation and has an optimized speed by using contour filtering, which makes it run hundreds of times faster than a trained expert. Developed for CX43 studies in the left ventricle, MARTA is a flexible tool applicable to morphometric and lateralization studies of other markers in any heart chamber or even skeletal muscle. This open-access software is available online

Analysis of age-related left ventricular collagen remodeling in living donors: Implications in arrhythmogenesis

Age-related fibrosis in the left ventricle (LV) has been mainly studied in animals by assessing collagen content. Using second-harmonic generation microscopy and image processing, we evaluated amount, aggregation and spatial distribution of LV collagen in young to old pigs, and middle-age and elder living donors. All collagen features increased when comparing adult and old pigs with young ones, but not when comparing adult with old pigs or middle-age with elder individuals. Remarkably, all collagen parameters strongly correlated with lipofuscin, a biological age marker, in humans. By building patient-specific models of human ventricular tissue electrophysiology, we confirmed that amount and organization of fibrosis modulated arrhythmia vulnerability, and that distribution should be accounted for arrhythmia risk assessment. In conclusion, we characterize the age-associated changes in LV collagen and its potential implications for ventricular arrhythmia development. Consistency between pig and human results substantiate the pig as a relevant model of age-related LV collagen dynamics. © 2022 The Author(s

One-step nucleic acid amplification (Osna) of sentinel lymph node in early-stage endometrial cancer: Spanish multicenter study (endo-osna)

The objective of this study was to evaluate the efficacy of one-step nucleic acid amplification (OSNA) for the detection of sentinel lymph node (SLN) metastasis compared to standard pathological ultrastaging in patients with early-stage endometrial cancer (EC). A total of 526 SLNs from 191 patients with EC were included in the study, and 379 SLNs (147 patients) were evaluated by both methods, OSNA and standard pathological ultrastaging. The central 1 mm portion of each lymph node was subjected to semi-serial sectioning at 200 µm intervals and examined by hematoxylin–eosin and immunohistochemistry with CK19; the remaining tissue was analyzed by OSNA for CK19 mRNA. The OSNA assay detected metastases in 19.7% of patients (14.9% micrometastasis and 4.8% macrometastasis), whereas pathological ultrastaging detected metastasis in 8.8% of patients (3.4% micrometastasis and 5.4% macrometastasis). Using the established cut-off value for detecting SLN metastasis by OSNA in EC (250 copies/µL), the sensitivity of the OSNA assay was 92%, specificity was 82%, diagnostic accuracy was 83%, and the negative predictive value was 99%. Discordant results between both methods were recorded in 20 patients (13.6%). OSNA resulted in an upstaging in 12 patients (8.2%). OSNA could aid in the identification of patients requiring adjuvant treatment at the time of diagnosis. © 2021 by the authors. Licensee MDPI, Basel, Switzerland

Evaluation of night-time aerosols measurements and lunar irradiance models in the frame of the first multi-instrument nocturnal intercomparison campaign

The first multi-instrument nocturnal aerosol optical depth (AOD) intercom-parison campaign was held at the high-mountain Iza ̃na Observatory (Tener-ife, Spain) in June 2017, involving 2-minutes synchronous measurements fromtwo different types of lunar photometers (Cimel CE318-T and Moon Preci-sion Filter Radiometer, LunarPFR) and one stellar photometer. The Robotic Lunar Observatory (ROLO) model developed by the U.S. Geological Survey(USGS) was compared with the open-access ROLO Implementation for Moonphotometry Observation (RIMO) model. Results showed rather small differ-ences at Iza ̃na over a 2-month time period covering June and July, 2017(±0.01 in terms of AOD calculated by means of a day/night/day coherencetest analysis and±2 % in terms of lunar irradiance). The RIMO model hasbeen used in this field campaign to retrieve AOD from lunar photometricmeasurements. No evidence of significant differences with the Moon’s phase angle wasfound when comparing raw signals of the six Cimel photometers involved inthis field campaign.The raw signal comparison of the participating lunar photometers (Cimeland LunarPFR) performed at coincident wavelengths showed consistent mea-surements and AOD differences within their combined uncertainties at 870 nmand 675 nm. Slightly larger AOD deviations were observed at 500 nm, point-ing to some unexpected instrumental variations during the measurement pe-riod.Lunar irradiances retrieved using RIMO for phase angles varying between0◦and 75◦(full Moon to near quarter Moon) were compared to the irradi-ance variations retrieved by Cimel and LunarPFR photometers. Our resultsshowed a relative agreement within±3.5 % between the RIMO model andthe photometer-based lunar irradiances.The AOD retrieved by performing a Langley-plot calibration each nightshowed a remarkable agreement (better than 0.01) between the lunar pho-tometers. However, when applying the Lunar-Langley calibration using RIMO,AOD differences of up to 0.015 (0.040 for 500 nm) were found, with differ-ences increasing with the Moon’s phase angle. These differences are thoughtto be partly due to the uncertainties in the irradiance models, as well asinstrumental deficiencies yet to be fully understood.High AOD variability in stellar measurements was detected during thecampaign. Nevertheless, the observed AOD differences in the Cimel/stellarcomparison were within the expected combined uncertainties of these twophotometric techniques. Our results indicate that lunar photometry is amore reliable technique, especially for low aerosol loading conditions.The uncertainty analysis performed in this paper shows that the com-bined standard AOD uncertainty in lunar photometry is dependent on thecalibration technique (up to 0.014 for Langley-plot with illumination-basedcorrection, 0.012-0.022 for Lunar-Langley calibration, and up to 0.1 for the 2 Sun-Moon Gain Factor method). This analysis also corroborates that theuncertainty of the lunar irradiance model used for AOD calculation is withinthe 5-10 % expected range.This campaign has allowed us to quantify the important technical diffi-culties that still exist when routinely monitoring aerosol optical propertiesat night-time. The small AOD differences observed between the three typesof photometers involved in the campaign are only detectable under pristinesky conditions such as those found in this field campaign. Longer campaignsare necessary to understand the observed discrepancies between instrumentsas well as to provide more conclusive results about the uncertainty involvedin the lunar irradiance model

Assessment of nocturnal aerosol optical depth from lunar photometry at the Izaña high mountain observatory

This work is a first approach to correct the systematic errors observed in the aerosol optical depth (AOD) retrieved at nighttime using lunar photometry and calibration techniques dependent on the lunar irradiance model. To this end, nocturnal AOD measurements were performed in 2014 using the CE318-T master Sun–sky–lunar photometer (lunar Langley calibrated) at the Izaña high mountain observatory. This information has been restricted to 59 nights characterized as clean and stable according to lidar vertical profiles. A phase angle dependence as well as an asymmetry within the Moon's cycle of the Robotic Lunar Observatory (ROLO) model could be deduced from the comparison in this 59-night period of the CE318-T calibration performed by means of the lunar Langley calibration and the calibration performed every single night by means of the common Langley technique. Nocturnal AOD has also been compared in the same period with a reference AOD based on daylight AOD extracted from the AErosol RObotic NETwork (AERONET) at the same station. Considering stable conditions, the difference ΔAODfit, between AOD from lunar observations and the linearly interpolated AOD (the reference) from daylight data, has been calculated. The results show that ΔAODfit values are strongly affected by the Moon phase and zenith angles. This dependency has been parameterized using an empirical model with two independent variables (Moon phase and zenith angles) in order to correct the AOD for these residual dependencies. The correction of this parameterized dependency has been checked at four stations with quite different environmental conditions (Izaña, Lille, Carpentras and Dakar) showing a significant reduction of the AOD dependence on phase and zenith angles and an improved agreement with daylight reference data. After the correction, absolute AOD differences for day–night–day clean and stable transitions remain below 0.01 for all wavelengths

The use of income information of census enumeration area as a proxy for the household income in a household survey

<p>Abstract</p> <p>Background</p> <p>Some of the Census Enumeration Areas' (CEA) information may help planning the sample of population studies but it can also be used for some analyses that require information that is more difficult to obtain at the individual or household level, such as income. This paper verifies if the income information of CEA can be used as a proxy for household income in a household survey.</p> <p>Methods</p> <p>A population-based survey conducted from January to December 2003 obtained data from a probabilistic sample of 1,734 households of Niterói, Rio de Janeiro, Brazil. Uniform semi-association models were adjusted in order to obtain information about the agreement/disagreement structure of data. The distribution of nutritional status categories of the population of Niterói according to income quintiles was performed using both CEA- and household-level income measures and then compared using Wald statistics for homogeneity. Body mass index was calculated using body mass and stature data measured in the households and then used to define nutritional status categories according to the World Health Organization. All estimates and statistics were calculated accounting for the structural information of the sample design and a significance level lower than 5% was adopted.</p> <p>Results</p> <p>The classification of households in the quintiles of household income was associated with the classification of these households in the quintiles of CEA income. The distribution of the nutritional status categories in all income quintiles did not differ significantly according to the source of income information (household or CEA) used in the definition of quintiles.</p> <p>Conclusion</p> <p>The structure of agreement/disagreement between quintiles of the household's monthly per capita income and quintiles of the head-of-household's mean nominal monthly income of the CEA, as well as the results produced by these measures when they were associated with the nutritional status of the population, showed that the CEA's income information can be used when income information at the individual or household levels is not available.</p