Phylogeographic structure of the pygmy shrew: revisiting the roles of southern and northern refugia in Europe

Southern and northern glacial refugia are considered paradigms that explain the complex phylogeographic patterns and processes of European biota. Here, we provide a revisited statistical phylogeographic analysis of the pygmy shrew Sorex minutus Linnaeus, 1766 (Eulipotyphla, Soricidae) examining the genetic diversity, genetic differentiation and demographic history in the Mediterranean peninsulas and in Western and Central Europe. The results showed support for genetically distinct and diverse phylogeographic groups consistent with southern and northern glacial refugia, as expected from previous studies, but also identified geographical barriers concordant with glaciated mountain ranges during the Last Glacial Maximum (LGM), early diversification events dated between the Upper Pleistocene and Lower Holocene for the main phylogeographic groups, and recent (post-LGM) patterns of demographic expansions. This study is the most comprehensive investigation of this species to date, and the results have implications for the conservation of intraspecific diversity and the preservation of the evolutionary potential of S. minutus

Between the Balkans and the Baltic : phylogeography of a common vole mitochondrial DNA lineage limited to Central Europe

The common vole (Microtus arvalis) has been a model species of small mammal for studying end-glacial colonization history. In the present study we expanded the sampling from central and eastern Europe, analyzing contemporary genetic structure to identify the role of a potential `northern glacial refugium', i.e. a refugium at a higher latitude than the traditional Mediterranean refugia. Altogether we analyzed 786 cytochrome b (cytb) sequences (representing mitochondrial DNA; mtDNA) from the whole of Europe, adding 177 new sequences from central and eastern Europe, and we conducted analyses on eight microsatellite loci for 499 individuals (representing nuclear DNA) from central and eastern Europe, adding data on 311 new specimens. Our new data fill gaps in the vicinity of the Carpathian Mountains, the potential northern refugium, such that there is now dense sampling from the Balkans to the Baltic Sea. Here we present evidence that the Eastern mtDNA lineage of the common vole was present in the vicinity of this Carpathian refugium during the Last Glacial Maximum and the Younger Dryas. The Eastern lineage expanded from this refugium to the Baltic and shows low cytb nucleotide diversity in those most northerly parts of the distribution. Analyses of microsatellites revealed a similar pattern but also showed little differentiation between all of the populations sampled in central and eastern Europe

Climatic influences on the genetic structure and distribution of the common vole and field vole in Europe

The purpose of this study was to examine the influence of climate on the distribution and present-day genetic structure of the common vole (Microtus arvalis) and the field vole (Microtus agrestis). In this study, we used previously published data on the genetic structure (using microsatellite DNA) of the common and field vole in Central Europe and a set of climatic variables to conduct binomial generalized linear and environmental niche modeling. In terms of present-day genetic structure, climate is an important factor shaping the patterns of distribution of the identified genetic groups, with the average minimum temperature in January being a significant factor for both species. For the field vole, average annual precipitation was an important factor also and consistent with the species’ preference for wet habitats. Therefore, this study has provided indirect evidence that (1) climate can shape the genetic structure and distribution of species at both broad and local scales and (2) using genetic data and species distribution modeling can be an effective approach to establish locations of putative glacial refugia for different species in Europe and to explore their past evolutionary history

Phylogeographical structure of the pygmy shrew : revisiting the roles of southern and northern refugia in Europe

Southern and northern glacial refugia are considered paradigms that explain the complex phylogeographical patterns and processes of European biota. Here, we provide a revisited statistical phylogeographical analysis of the pygmy shrew Sorex minutus Linnaeus, 1766 (Eulipotyphla, Soricidae), examining its genetic diversity, genetic differentiation and demographic history in the Mediterranean peninsulas and in Western and Central Europe. The results showed support for genetically distinct and diverse phylogeographical groups consistent with southern and northern glacial refugia, as expected from previous studies. We also identified geographical barriers concordant with glaciated mountain ranges during the Last Glacial Maximum (LGM), early diversification events dated between the Late Pleistocene and Early Holocene for the main phylogeographical groups, and recent (post-LGM) patterns of demographic expansions. This study is the most comprehensive investigation of this species to date, and the results have implications for the conservation of intraspecific diversity and the preservation of the evolutionary potential of S. minutus

Post-glacial colonisation of Europe by the wood mouse, Apodemus sylvaticus : evidence of a northern refugium and dispersal with humans

The wood mouse Apodemus sylvaticus is an opportunistic rodent that is found throughout most of the European mainland. It is present on many islands around the margins of the continent and in northern Africa. The species has been the subject of previous phylogeographic studies but these have focussed on the more southerly part of its range. A substantial number of new samples, many of them from the periphery of the species’ range, contribute to an exceptional dataset comprising 981 mitochondrial cytochrome b sequences. These new data provide sufficient resolution to transform our understanding of the species’ survival through the last glaciation and its subsequent re-colonisation of the continent. The deepest genetic split we found is in agreement with previous studies and runs from the Alps to central Ukraine, but we further distinguish two separate lineages in wood mice to the north and west of this line. It is likely that this part of Europe was colonised from two refugia, putatively located in the Iberian peninsula and the Dordogne or Carpathian region. The wood mouse therefore joins the growing number of species with extant populations that appear to have survived the Last Glacial Maximum in northern refugia, rather than solely in traditionally recognised refugial locations in the southern European peninsulas. Furthermore, the existence of a northern refugium for the species was predicted in a study of mitochondrial variation in a specific parasite of the wood mouse, demonstrating the potential value of data from parasites to phylogeographic studies. Lastly, the presence of related haplotypes in widely disparate locations, often on islands or separated by substantial bodies of water, demonstrates the propensity of the wood mouse for accidental human-mediated transport

Osteoarthritis of the temporo-mandibular joint in free-living Soay sheep on St Kilda

Osteoarthritis (OA) is a common degenerative disease of synovial joints with the potential to cause pathology and welfare issues in both domestic and wild ruminants. Previous work has identified OA of the elbow joint in domestic sheep, but the prevalence of OA of the jaw and in particular the temporomandibular joint (TMJ) has not been previously reported. Following up a previous report of a single case of TMJ OA in a free-living population of Soay sheep on St Kilda in the Outer Hebrides, an archive of 2736 jaw bones collected from this population between 1985 and 2010 was surveyed. Evidence of TMJ OA was found in 35 sheep. Of these, 15 cases were unilateral (11 right side, 4 left side) and the remaining 20 were bilateral. TMJ pathology was much more common in females than males: only 3/35 cases were in males, with overall prevalence at 2.3% for females and 0.2% in males. Radiographic examination of TMJ with OA revealed extensive bone re-modelling with osteophytosis, particularly of the condyle of the mandible. There was a highly significant age-dependence in TMJ OA incidence among age classes: 30/35 cases occurred in geriatric sheep (aged 7 years or more; 11.1% prevalence within this age class), four in adults (2-6 years old; 0.9% prevalence), one in yearlings (0.3% prevalence) and none in lambs. The low incidence in males was confounded by sex differences in longevity: while 18% of females sampled died in the geriatric age class, only 2% of males did so. Although the low prevalence of the pathology limited the ability to test its association with other traits, it was possible to examine relationships with reproductive performance measures amongst geriatric females with and without TMJ OA. Although there were trends towards lower fecundity and lower lamb birth weight in the breeding season prior to death, these were not statistically significant. (C) 2014 Elsevier Ltd. All rights reserved

Ferrite nanoparticles for future heart diagnostics

Normally, CoFe2O4 has been known as ferromagnetic ferrite with a quite large magnetic moment. However, since we aim to inject the particles into the human body, we are also interested in ZnFe2O 4 because in the human body, Fe and Zn exist, so that adding ZnFe2O4 is safer. In both cases, the nanoparticles are coated by silica in order to get rid of toxicity. Our main purpose is to test whether these nanoparticles affect the contractile function of heart cells. Our results on rat\u27s heart cells have shown that both Zn and Co ferrites improved the contractility of heart cells. Notably, although both nanoparticles increased contraction and delayed relaxation, Co ferrites induced a greater contraction but with a slower relaxation. We can theoretically argue that the magnetization effects of the quantum dots have a considerable effect on the pulsating properties of the heart cells. Through this effect, the locally applied magnetic field is able to induce as well as turn on/off various regular beating patterns, thus, resetting the heart beatings. © 2013 Springer-Verlag Berlin Heidelberg