Unveiling functional linkages between habitats and organisms: Macroalgal habitats as influential factors of fish functional traits

Understanding the relationship between the characteristics of habitats and their associated community is essential to comprehend the functioning of ecological systems and prevent their degradation. This is particularly relevant for in decline, habitat-forming species, such as macroalgae, which support diverse communities of fish in temperate rocky reefs. To understand the link between the functional habitats of macroalgae and the functional dimension of their associated fish communities, we used a standardized underwater visual census to quantify the macroalgal functional diversity, as well as the functional diversity, redundancy, and richness of fish communities in 400 sites scattered in three southern temperate marine realms. Our findings reveal that functional macroalgal habitats can be classified into three groups that shape the functional diversity, redundancy, and richness of fish when considering trait commonness. These results enhance our comprehension of the functional connections between the habitat and coexisting fish within marine ecosystems, providing valuable insights for the preservation of these habitats

Emergent Spatial Patterns Can Indicate Upcoming Regime Shifts in a Realistic Model of Coral Community

Increased stress on coastal ecosystems, such as coral reefs, seagrasses, kelp forests, and other habitats, can make them shift toward degraded, often algae-dominated or barren communities. This has already occurred in many places around the world, calling for new approaches to identify where such regime shifts may be triggered. Theoretical work predicts that the spatial structure of habitat-forming species should exhibit changes prior to regime shifts, such as an increase in spatial autocorrelation. However, extending this theory to marine systems requires theoretical models connecting field-supported ecological mechanisms to data and spatial patterns at relevant scales. To do so, we built a spatially explicit model of subtropical coral communities based on experiments and long-term datasets from Rapa Nui (Easter Island, Chile), to test whether spatial indicators could signal upcoming regime shifts in coral communities. Spatial indicators anticipated degradation of coral communities following increases in frequency of bleaching events or coral mortality. However, they were generally unable to signal shifts that followed herbivore loss, a widespread and well-researched source of degradation, likely because herbivory, despite being critical for the maintenance of corals, had comparatively little effect on their selforganization. Informative trends were found under both equilibrium and nonequilibrium conditions but were determined by the type of direct neighbor interactions between corals, which remain relatively poorly documented. These inconsistencies show that while this approach is promising, its application to marine systems will require detailed information about the type of stressor and filling current gaps in our knowledge of interactions at play in coral communities

Species diversity promotes facilitation under stressful conditions

Climate change is expected to lead to a drier world, with more frequent and severe droughts, constituting a growing threat to biodiversity, especially in drylands. Positive plant−plant interactions, such as nurse plants facilitating beneficiary communities in their understorey, could mitigate such climate‐induced stress. However, testing the real‐world relevance of nurse facilitation under drought requires accounting for interactions within the diverse beneficiary communities, which may reduce, or amplify the buffering effect of a nurse. Here, we investigated when and how the interactions among nurse plants and beneficiary community members buffered drought effects in a Mediterranean semiarid abandoned cropland. We transplanted sapling beneficiary communities of either one or three species either under a nurse or in open microsites for different soil moisture levels through watering. Net facilitative effects on survival and biomass were only observed when beneficiary communities were species‐diverse and under drought (without watering), meaning that under these conditions, facilitation provided by the nurse had larger positive effects than the negative effects stemming from competition with the nurse and among beneficiary species. Nurses appear to be generating these increases in survival and biomass in drought conditions via two mechanisms commonly associated with watering in open sites: they generate complementarity among the beneficiaries and shift traits to lower stress profiles. Contrasting with watering, which was found to enhance competitive hierarchy, our study shows that nurses appear to alter species dominance, favouring the less competitive species. Our results highlight three mechanisms (complementarity, competitive dominance, and trait plasticity) by which nurse species could mitigate the loss of biodiversity and biomass production due to water stress. Maintaining and supporting nurse species is thus a potentially pivotal approach in the face of projected increase in drought conditions for many drylands across the world

Easy, fast and reproducible Stochastic Cellular Automata withchouca

* Stochastic cellular automata (SCA) are models that describe spatial ecological dynamics using a grid of cells that switch between discrete states over time, depending only on current states (Markov chain processes). They are widely used to understand how small-scale processes scale up to affect ecological dynamics at larger spatial scales, and have been applied to a wide diversity of theoretical and applied problems in all systems, such as arid ecosystems, coral reefs, forests, bacteria, or urban growth. * Despite their wide applications, SCA implementations found in the literature are often ad-hoc, lacking performance and guarantees of correctness. More importantly, de novo implementation of SCA for each specific system and application represents a major barrier for many practitioners. To provide a unifying, well-tested technical basis to this class of models and facilitate their implementation, we built chouca. which is an R package that translates intuitive SCA model declarations and expert-based assumptions about the state space system into compiled code and run simulations in a reproducible and efficient way. * chouca supports a wide set of SCA along with deterministic cellular automata, with performance typically two to three orders of magnitude that of ad hoc implementations found in the literature, all while maintaining an intuitive interface in the R environment. Exact and mean-field simulations can be run, and both numerical and graphical results can be easily exported. * Besides providing better reproducibility and accessibility, a fast engine for SCA unlocks novel, computationally intensive statistical approaches, such as simulation-based inference of ecological interactions from field data, which represents by itself an important avenue for research. By providing an easy and efficient entry point to SCAs, chouca lowers the bar to the use of this class of models for ecologists, managers and general practitioners, providing a leveled-off reproducible platform while opening novel methodological approaches

Common Oversights in the Design and Monitoring of Ecosystem-Based Management Plans and the Siting of Marine Protected Areas

Scientific information to properly manage resources, improve sustainability of exploited ecosystems and conserve biodiversity will never be sufficient to provide a ‘how-to’ user manual for managers and conservation agencies. Yet, scientists must still provide guidelines to preserve the ecosystem services on which life depends and help us navigate a path away from collapse. Facing the impossibility of managing data-poor coastal fisheries using traditional fisheries protocols and recognizing the limitations of ‘resource-focus’ approaches, which disregard the wider ecosystem implications of fisheries and the human dimensions of sustainability, scientists and practitioners have turned to more integrated and holistic approaches. The implementation of Marine Protected Areas (MPAs) and Ecosystem Based Management (EBM) plans have been endorsed by the scientific community and are prioritized. Here, we highlight two persistently overlooked or under-appreciated aspects in the zonation design, the monitoring programs, and EBM and MPA effectiveness assessments. Using the Galápagos Marine Reserve Management Plan (GMRMP) as example we illustrate the need to include: (1) basic principles of dispersal and connectivity in spatial planning and EBM in general and (2) multi-species models to assess ecosystem-wide consequences of management policies, i.e. adaptive monitoring. On one hand, well-developed metapopulatiton theory, advanced oceanographic modeling, and global hydrographic information make it possible to consider connectivity in spatial management and we show why it is urgent to include time-varying metapopulation dynamics if we are to sustainably exploit coastal marine ecosystems, including the Galapagos Marine Reserve. On the other hand, attributing biodiversity changes to policy cannot be done without species interaction models that anticipate the propagation of effects through the ecological web. We suggest that quantitative, bioenergetic multi-species models, parameterized following basic allometric principles can be used in a qualitative manner to simulate management scenarios and identify the species that can be most affected by spatial management decisions

Cognitive Performances Are Selectively Enhanced during Chronic Caloric Restriction or Resveratrol Supplementation in a Primate

Effects of an 18-month treatment with a moderate, chronic caloric restriction (CR) or an oral supplementation with resveratrol (RSV), a potential CR mimetic, on cognitive and motor performances were studied in non-human primates, grey mouse lemurs (Microcebus murinus)

Mise à jour des recommandations du GEFPICS pour l’évaluation du statut HER2 dans les cancers du sein en France

En Europe, les patientes atteintes d’un cancer du sein invasif susceptibles de recevoir un traitement ciblé anti-HER2 sont actuellement sélectionnées sur la base d’un test immunohistochimique (IHC). Les techniques d’hybridation in situ (HIS) doivent être utilisées pour l’évaluation des cas IHC ambigus (2+) et pour l’étalonnage de la technique IHC. Les patientes éligibles au traitement ciblant HER2 présentent un statut HER2 positif défini par un test IHC 3+ ou un test 2+ amplifié. Une détection correcte du statut HER2 est indispensable à une utilisation optimale des thérapeutiques ciblées puisque leur efficacité est limitée aux patientes surexprimant HER2. Il est capital que l’évaluation du statut HER2 soit optimisée et fiable. Ces recommandations du groupe d’étude des facteurs pronostiques IHC dans le cancer du sein (GEFPICS) détaillent et commentent les différentes étapes des techniques IHC et HIS, les contrôles utilisables et les règles générales de l’apprentissage de la lecture. Une fois acquis, ce savoir-faire doit être pérennisé par l’observation de règles de bonnes pratiques techniques (utilisation rigoureuse de témoins internes et externes et participation régulière à des programmes d’Assurance qualité [AQ])., Summary In Europe, patients who may benefit from an HER2 targeted drug are currently selected by immunohistochemistry (IHC). In situ hybridization (ISH) techniques should be used for complementary assessment of ambiguous 2+ IHC cases and for the calibration of the IHC technique. Eligibility to an HER2 target treatment is defined by an HER2 positive status being IHC test 3+ or 2+ amplified. Reliable detection of HER2 status is essential to the appropriate usage of HER2 targeted drugs because its specificity is limited to tumors overexpressing HER2. It is essential that the IHC evaluation of the HER2 status of a mammary carcinoma is optimized and reliable. This GEFPICS’ guidelines look over the different steps of the IHC technique, the controls and, the rules for interpretation. Once acquired, this knowledge must be perpetuated by the observation of rules of good technical practice (internal and external controls, quality assurance programs)

Mise à jour 2014 des recommandations du GEFPICS pour l’évaluation du statut HER2 dans les cancers du sein en France

De nouvelles recommandations internationales pour l’évaluation du statut HER2 dans les cancers du sein, basées sur plus de dix ans d’expérience et sur les résultats d’études cliniques et de concordance entre les différentes techniques de détection, viennent tout juste de voir le jour. Le présent article a pour objet de faire le point sur ces nouvelles recommandations, à la lumière de la publication récente du groupe de travail de l’American Society of Clinical Oncology (ASCO) et du Collège des pathologistes américains (CAP), adaptées à la pratique de la pathologie en France et revues par le groupe GEFPICS. À l’ère de la médecine personnalisée, la détermination du statut HER2 reste un élément phare dans le panel des biomarqueurs théranostiques des cancers du sein. Si l’interprétation du statut HER2 dans les cancers du sein est aisée dans la majorité des cas, un certain nombre de situations anatomocliniques est d’interprétation plus délicate, telles que la possibilité rare mais réelle de l’hétérogénéité intra-tumorale du statut de HER2, les formes à différenciation micropapillaire ou la ré-évaluation du statut des biomarqueurs lors de la rechute métastatique. Ces nouvelles recommandations abordent ces différentes questions, reprécisent les conditions pré-analytiques optimales et les critères d’interprétation (notamment des cas 2+), afin de réduire au maximum le risque de faux négatifs. Plus que jamais, la mobilisation de la spécialité d’anatomo-cytopathologie autour de la qualité des tests théranostiques témoigne de son implication dans la chaîne des soins en cancérologie., Summary International guidelines on HER2 determination in breast cancer have just been updated by the American Society of Clinical Oncology (ASCO) and College of American Pathologists (CAP), on the basis of more than ten-year practice, results of clinical trials and concordance studies. The GEFPICS group, composed of expert pathologists in breast cancer, herein presents these recommendations, adapted to the French routine practice. These guidelines highlight the possible diagnosis difficulties with regards to HER2 status determination, such as intra-tumor heterogeneity, special histological subtypes and biomarker re-evaluation during metastatic relapse. Pre-analytical issues and updated scoring criteria (especially for equivocal cases) are detailed, in order to decrease the occurrence of false negative cases. In the era of personalized medicine, pathologists are more than ever involved in the quality of oncotheranostic biomarker evaluation.