241 research outputs found

    Application of BRET to monitor ligand binding to GPCRs

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    Bioluminescence resonance energy transfer (BRET) is a well-established method for investigating protein-protein interactions. Here we present a BRET approach to monitor ligand binding to G protein–coupled receptors (GPCRs) on the surface of living cells made possible by the use of fluorescent ligands in combination with a bioluminescent protein (NanoLuc) that can be readily expressed on the N terminus of GPCRs

    Synthesis of charged cyclodextrin highly soluble in organic solvents for enantiomer separations in capillary electrophoresis

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    Synthesis of charged cyclodextrin highly soluble in organic solvents was made by exchanging the inorganic counter ion (Na+) of heptakis (2,3-di-Omethyl- 6-O-sulfo)-ò-CD (Na7HDMS) with tetrabutylammonium (TBA+), to produce TBA7HDMS. The same ion exchange was used to synthesize the TBA salts of the analogous CDs TBA6HxDMS and TBA8ODMS. Indirect-UV detection capillary electrophoresis (CE) and 1H NMR were used as the characterization methods. Separations of thirteen pharmaceuticals were made using TBA7HDMS as the chiral resolving agent in aqueous CE. On the other hand, a set of twenty pharmaceuticals was used for the enantiomer separations in non-aqueous CE (NACE). Comparison between the results obtained with TBA7HDMS in aqueous and non-aqueous CE were made. In addition, comparison between the results obtained with TBA7HDMS and Na7HDMS in aqueous and non-aqueous CE were made as well

    Chiral drug analysis in forensic chemistry: An overview

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    Many substances of forensic interest are chiral and available either as racemates or pure enantiomers. Application of chiral analysis in biological samples can be useful for the determination of legal or illicit drugs consumption or interpretation of unexpected toxicological effects. Chiral substances can also be found in environmental samples and revealed to be useful for determination of community drug usage (sewage epidemiology), identification of illicit drug manufacturing locations, illegal discharge of sewage and in environmental risk assessment. Thus, the purpose of this paper is to provide an overview of the application of chiral analysis in biological and environmental samples and their relevance in the forensic field. Most frequently analytical methods used to quantify the enantiomers are liquid and gas chromatography using both indirect, with enantiomerically pure derivatizing reagents, and direct methods recurring to chiral stationary phases. © 2018 by the authors.Acknowledgments: This work was partially supported through national funds provided by FCT/MCTES- Foundation for Science and Technology from the Minister of Science, Technology and Higher Education (PIDDAC) and European Regional Development Fund (ERDF) through the COMPETE-Programa Operacional Factores de Competitividade (POFC) programme, under the Strategic Funding UID/Multi/04423/2013, the project PTDC/MAR-BIO/4694/2014 (reference POCI-01-0145-FEDER-016790; Project 3599-Promover a Producao Cientifica e Desenvolvimento Tecnologico e a Constituicao de Redes Tematicas (3599-PPCDT)) in the framework of the programme PT2020 as well as by the project INNOVMAR-Innovation and Sustainability in the Management and Exploitation of Marine Resources (reference NORTE-01-0145-FEDER-000035, within Research Line NOVELMAR), supported by North Portugal Regional Operational Programme (NORTE 2020), under the PORTUGAL 2020 Partnership Agreement, through the European Regional Development Fund (ERDF), and Chiral_Drugs_CESPU_2017

    Novel chiral stationary phases (CSP) for enantioseparation processes

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    Ph.DDOCTOR OF PHILOSOPH

    Computational Prediction and Experimental Validation of ADMET Properties for Potential Therapeutics

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    The drug development process in the United States is an expensive and lengthy process, usually taking a decade or more to gain approval for a drug candidate. The majority of proposed, early stage therapeutics fail, even though the typical process narrows from hundreds or thousands of small molecules down to one late stage candidate. One reason for failure is due to the drugs poor or unexpected absorption, distribution, metabolism, excretion, and toxicity (ADMET) properties. Researchers attempt to predict ADMET properties as a way to help prioritize compounds for lead development to minimize expense and time. It was the overall goal of this project to further the prediction of two ADMET properties (absorption and distribution) through the development and application of quantitative structure-activity (QSAR) relationship computational models predicting human intestinal absorption (HIA), Caco-2 permeability (in vivo & in vitro measurements of absorption), and protein binding (measurement of distribution). These combined models would then be paired with additional experimental methods to help prioritize compounds for future ligand discovery efforts in our lab group and for our collaborators. Five computational QSAR models for each of these three properties were created using different molecular descriptor types and solvation models in an effort to examine which approach resulted in optimal performance. The model development process and validation stages of these QSAR models is outlined herein, along with analysis and discussion of commonly mispredicted compounds. Performance was similar across all models (independent of the molecular descriptor used and the solvation models applied. Future efforts at model development will depend on the size of the dataset to be analyzed. If the dataset is small, the i3D-Born solvation models will be used because these models better represent physiological conditions and performed slightly better than the other models. However, if the dataset is large, the 2D descriptor models will be used as these models do not require that a time and resource-intensive conformational search be performed and because it performed nearly as well as the i3D-Born solvation models. There were no common structural features consistently found associated with mispredicted structures. As such we are unable, at this time to pinpoint classes of compounds to avoid in future effortsThe experimental methods outlined in this work focused on developing methods to determine protein binding, specifically determining a fast, inexpensive workflow to classify the difference between high and low protein binding small molecules. Two techniques were used to determine protein binding of small molecules to bovine serum albumin (BSA): fluorescence polarization (FP) competition, and Nano Differential Scanning Fluorimetry (NanoDSF). FP assays quantifies the change in polarization of a target fluorophore between its protein bound and free states, an equilibrium that can be impacted by the presence of small molecule competitors. This method can be performed in a quantitative manner, but it also requires more time and more expensive and specialized instrumentation. In contrast, NanoDSF determines the melting temperature of BSA in the presence (higher) or in the absence (lower) small molecules by determining the intrinsic fluorescence of tryptophan and tyrosine residues while applying a temperature gradient. This method is qualitative, at least in our approach, but is very fast and requires much less expensive instrumentation. In our hands both techniques were successful in distinguishing differences between small molecules exhibiting low and high BSA binding. In summary, this project was successful in that we 1) developed computational tools capable of correctly predicting ADMET properties including HIA, Caco-2 permeability, and protein binding and 2) developed experimental workflows to quantitatively and qualitatively separate small molecules into low and high affinity BSA binders. With these in silico models and in vitro methods established, future research in our group and with our collaborators can make use of these tools to help prioritize compounds in ligand/ inhibitor discovery efforts
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