112,456 research outputs found
Representing Complexity in Part-Whole Relationships within the Foundational Model of Anatomy
The Foundational Model of Anatomy (FMA) is a frame-based ontology that represents declarative knowledge about the structural organization of the human body. Part-whole relationships play a particularly important role in this representation. In order to assure that knowledge-based applications relying on the FMA as a resource can reason about anatomy, we have modified and enhanced currently available schemes of meronymic relationships. We have introduced and defined distinct partitions for decomposing anatomical structures and attributed the part relationships in order to eliminate ambiguity and enhance specificity in the richness of meronymic relationships within the FMA
The Foundational Model of Anatomy Ontology
Anatomy is the structure of biological organisms. The term also denotes the scientific
discipline devoted to the study of anatomical entities and the structural and
developmental relations that obtain among these entities during the lifespan of an
organism. Anatomical entities are the independent continuants of biomedical reality on
which physiological and disease processes depend, and which, in response to etiological
agents, can transform themselves into pathological entities. For these reasons, hard copy
and in silico information resources in virtually all fields of biology and medicine, as a
rule, make extensive reference to anatomical entities. Because of the lack of a
generalizable, computable representation of anatomy, developers of computable
terminologies and ontologies in clinical medicine and biomedical research represented
anatomy from their own more or less divergent viewpoints. The resulting heterogeneity
presents a formidable impediment to correlating human anatomy not only across
computational resources but also with the anatomy of model organisms used in
biomedical experimentation. The Foundational Model of Anatomy (FMA) is being
developed to fill the need for a generalizable anatomy ontology, which can be used and
adapted by any computer-based application that requires anatomical information.
Moreover it is evolving into a standard reference for divergent views of anatomy and a
template for representing the anatomy of animals. A distinction is made between the FMA
ontology as a theory of anatomy and the implementation of this theory as the FMA
artifact. In either sense of the term, the FMA is a spatial-structural ontology of the
entities and relations which together form the phenotypic structure of the human
organism at all biologically salient levels of granularity. Making use of explicit
ontological principles and sound methods, it is designed to be understandable by human
beings and navigable by computers. The FMA’s ontological structure provides for
machine-based inference, enabling powerful computational tools of the future to reason
with biomedical data
Some Ontological Principles for Designing Upper Level Lexical Resources
The purpose of this paper is to explore some semantic problems related to the
use of linguistic ontologies in information systems, and to suggest some
organizing principles aimed to solve such problems. The taxonomic structure of
current ontologies is unfortunately quite complicated and hard to understand,
especially for what concerns the upper levels. I will focus here on the problem
of ISA overloading, which I believe is the main responsible of these
difficulties. To this purpose, I will carefully analyze the ontological nature
of the categories used in current upper-level structures, considering the
necessity of splitting them according to more subtle distinctions or the
opportunity of excluding them because of their limited organizational role.Comment: 8 pages - gzipped postscript file - A4 forma
Symbolic modeling of structural relationships in the Foundational Model of Anatomy
The need for a sharable resource that can provide deep anatomical knowledge and support inference for biomedical applications has recently been the driving force in the creation of biomedical ontologies. Previous attempts at the symbolic representation of anatomical relationships necessary for such ontologies have been largely limited to general partonomy and class subsumption. We propose an ontology of anatomical relationships beyond class assignments and generic part-whole relations and illustrate the inheritance of structural attributes in the Digital Anatomist Foundational Model of Anatomy. Our purpose is to generate a symbolic model that accommodates all structural relationships and physical properties required to comprehensively and explicitly describe the physical organization of the human body
A proposal for a shallow ontologization of WordNet
En este artículo se presenta el trabajo que se está realizando para la llamada ontologización superficial de WordNet, una estructura orientada a superar muchos de los problemas estructurales de la popular base de conocimiento léxico. El resultado esperado es un recurso multilingüe más apropiado que los ahora existentes para el procesamiento semántico a gran escala.This paper presents the work carried out towards the so-called shallow ontologization of WordNet, which is argued to be a way to overcome most of the many structural problems of the widely used lexical knowledge base. The result shall be a multilingual resource more suitable for large-scale semantic processing
Ontology: A Linked Data Hub for Mathematics
In this paper, we present an ontology of mathematical knowledge concepts that
covers a wide range of the fields of mathematics and introduces a balanced
representation between comprehensive and sensible models. We demonstrate the
applications of this representation in information extraction, semantic search,
and education. We argue that the ontology can be a core of future integration
of math-aware data sets in the Web of Data and, therefore, provide mappings
onto relevant datasets, such as DBpedia and ScienceWISE.Comment: 15 pages, 6 images, 1 table, Knowledge Engineering and the Semantic
Web - 5th International Conferenc
Modelling Discourse-related terminology in OntoLingAnnot’s ontologies
Recently, computational linguists have shown great interest in discourse annotation in an attempt to capture the internal relations in texts. With this aim, we have formalized the linguistic knowledge associated to discourse into different linguistic ontologies. In this paper, we present the most prominent discourse-related terms and concepts included in the ontologies of the OntoLingAnnot annotation model. They show the different units, values, attributes, relations, layers and strata included in the discourse annotation level of the OntoLingAnnot model, within which these ontologies are included, used and evaluated
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