AT-GIS: highly parallel spatial query processing with associative transducers

Users in many domains, including urban planning, transportation, and environmental science want to execute analytical queries over continuously updated spatial datasets. Current solutions for largescale spatial query processing either rely on extensions to RDBMS, which entails expensive loading and indexing phases when the data changes, or distributed map/reduce frameworks, running on resource-hungry compute clusters. Both solutions struggle with the sequential bottleneck of parsing complex, hierarchical spatial data formats, which frequently dominates query execution time. Our goal is to fully exploit the parallelism offered by modern multicore CPUs for parsing and query execution, thus providing the performance of a cluster with the resources of a single machine. We describe AT-GIS, a highly-parallel spatial query processing system that scales linearly to a large number of CPU cores. ATGIS integrates the parsing and querying of spatial data using a new computational abstraction called associative transducers(ATs). ATs can form a single data-parallel pipeline for computation without requiring the spatial input data to be split into logically independent blocks. Using ATs, AT-GIS can execute, in parallel, spatial query operators on the raw input data in multiple formats, without any pre-processing. On a single 64-core machine, AT-GIS provides 3× the performance of an 8-node Hadoop cluster with 192 cores for containment queries, and 10× for aggregation queries

The Family of MapReduce and Large Scale Data Processing Systems

In the last two decades, the continuous increase of computational power has produced an overwhelming flow of data which has called for a paradigm shift in the computing architecture and large scale data processing mechanisms. MapReduce is a simple and powerful programming model that enables easy development of scalable parallel applications to process vast amounts of data on large clusters of commodity machines. It isolates the application from the details of running a distributed program such as issues on data distribution, scheduling and fault tolerance. However, the original implementation of the MapReduce framework had some limitations that have been tackled by many research efforts in several followup works after its introduction. This article provides a comprehensive survey for a family of approaches and mechanisms of large scale data processing mechanisms that have been implemented based on the original idea of the MapReduce framework and are currently gaining a lot of momentum in both research and industrial communities. We also cover a set of introduced systems that have been implemented to provide declarative programming interfaces on top of the MapReduce framework. In addition, we review several large scale data processing systems that resemble some of the ideas of the MapReduce framework for different purposes and application scenarios. Finally, we discuss some of the future research directions for implementing the next generation of MapReduce-like solutions.Comment: arXiv admin note: text overlap with arXiv:1105.4252 by other author

Fine-grained visualization pipelines and lazy functional languages

The pipeline model in visualization has evolved from a conceptual model of data processing into a widely used architecture for implementing visualization systems. In the process, a number of capabilities have been introduced, including streaming of data in chunks, distributed pipelines, and demand-driven processing. Visualization systems have invariably built on stateful programming technologies, and these capabilities have had to be implemented explicitly within the lower layers of a complex hierarchy of services. The good news for developers is that applications built on top of this hierarchy can access these capabilities without concern for how they are implemented. The bad news is that by freezing capabilities into low-level services expressive power and flexibility is lost. In this paper we express visualization systems in a programming language that more naturally supports this kind of processing model. Lazy functional languages support fine-grained demand-driven processing, a natural form of streaming, and pipeline-like function composition for assembling applications. The technology thus appears well suited to visualization applications. Using surface extraction algorithms as illustrative examples, and the lazy functional language Haskell, we argue the benefits of clear and concise expression combined with fine-grained, demand-driven computation. Just as visualization provides insight into data, functional abstraction provides new insight into visualization

Directory attribute grammars

To publish documents we must take care of documents' structure and their formal layout. If a large document is composed by a lot of parts including text, images, code and so on, they will lay in different files; so file organization should also be a concern in the mind of the publisher. Normally, we focus on the structure and design, and forget file organization until this becomes a trouble, at production stage. The most common way to organize files is using the file system; directory structure is very flexible but quickly becomes disorganized. In this paper we present a way to turn a file system tree into an organized web page, using a grammatical formalism (hereafter called Directory Attribute Grammars: DAG = AG + Makefiles). We developed a tool (similar to a compiler) to publish different formats on the web, automatically, from the file structure and a DAG specification. This tool allows us to maintain a huge number of documents of different types, and process them systematically

VThreads: A novel VLIW chip multiprocessor with hardware-assisted PThreads

We discuss VThreads, a novel VLIW CMP with hardware-assisted shared-memory Thread support. VThreads supports Instruction Level Parallelism via static multiple-issue and Thread Level Parallelism via hardware-assisted POSIX Threads along with extensive customization. It allows the instantiation of tightlycoupled streaming accelerators and supports up to 7-address Multiple-Input, Multiple-Output instruction extensions. VThreads is designed in technology-independent Register-Transfer-Level VHDL and prototyped on 40 nm and 28 nm Field-Programmable gate arrays. It was evaluated against a PThreads-based multiprocessor based on the Sparc-V8 ISA. On a 65 nm ASIC implementation VThreads achieves up to x7.2 performance increase on synthetic benchmarks, x5 on a parallel Mandelbrot implementation, 66% better on a threaded JPEG implementation, 79% better on an edge-detection benchmark and ~13% improvement on DES compared to the Leon3MP CMP. In the range of 2 to 8 cores VThreads demonstrates a post-route (statistical) power reduction between 65% to 57% at an area increase of 1.2%-10% for 1-8 cores, compared to a similarly-configured Leon3MP CMP. This combination of micro-architectural features, scalability, extensibility, hardware support for low-latency PThreads, power efficiency and area make the processor an attractive proposition for low-power, deeply-embedded applications requiring minimum OS support

An XML Query Engine for Network-Bound Data

XML has become the lingua franca for data exchange and integration across administrative and enterprise boundaries. Nearly all data providers are adding XML import or export capabilities, and standard XML Schemas and DTDs are being promoted for all types of data sharing. The ubiquity of XML has removed one of the major obstacles to integrating data from widely disparate sources –- namely, the heterogeneity of data formats. However, general-purpose integration of data across the wide area also requires a query processor that can query data sources on demand, receive streamed XML data from them, and combine and restructure the data into new XML output -- while providing good performance for both batch-oriented and ad-hoc, interactive queries. This is the goal of the Tukwila data integration system, the first system that focuses on network-bound, dynamic XML data sources. In contrast to previous approaches, which must read, parse, and often store entire XML objects before querying them, Tukwila can return query results even as the data is streaming into the system. Tukwila is built with a new system architecture that extends adaptive query processing and relational-engine techniques into the XML realm, as facilitated by a pair of operators that incrementally evaluate a query’s input path expressions as data is read. In this paper, we describe the Tukwila architecture and its novel aspects, and we experimentally demonstrate that Tukwila provides better overall query performance and faster initial answers than existing systems, and has excellent scalability

Metabolinės P sistemos įgyvendinimo lauku programuojamomis loginėmis matricomis tyrimas

The advancement in the fields of electronics and nature inspired computing, including metabolic P (MP) systems, presents new possible solutions to existing problems,however there are still no implementations of MP systems in field programmable gate arrays (FPGA). Therefore, in this work the problem of lack of knowledge about the quality of MP systems implementation in FPGA together with absence of implementation technique for multiple and effective MP systems is solved. The object of the research is specialized MP system implementations in FPGA that operate in real-time. The main aspects of the research object investigated in the thesis are: implementation quality and techniques. The aim of the thesis is to offer original FPGA based MP system solutions by creating and investigating real-time metabolic process electronic system used for imitation and testing. In order to solve the stated problem and reach the aim of the thesis the following objectives are formulated: using theoretical results of MP systems and other best practices, offer original solutions for MP system transformation to FPGA structural elements and signal processing schemes; reveal quality characteristics of the transformation based on throughput, complexity and power consumption; create real-time metabolic process imitation and testing electronic system and perform its evaluation experiments. The dissertation consists of an introduction, four chapters and general conclusions.The first chapter reveals the fundamental knowledge on nature inspired computing,MP system definition and application, and FPGA implementation quality estimation.In the second chapter the quality criteria of calculation accuracy, throughput,resource usage, power consumption and interface complexity are selected for the evaluation of MP system FPGA implementation. New combined MP system quality metric ant its visualisation is also proposed. In the third chapter the common FPGA implementation techniques are adapted for MP systems and new unified technique is proposed. The evaluation of the developed MP system implementations in FPGA is presented in the fourth chapter. The experiments consist of a single MP system implementation using three different techniques and a multiple MP system implementation using two new developed unified implementation techniques. The main results of the thesis were published in 5 scientific publications: three of them were printed in peer-reviewed scientific journals, one of them in Clarivate Analytics Web of Science database, two articles – in conference proceedings. The research results were presented in 6 scientific conferences

Auto-Pipe and the X Language: A Toolset and Language for the Simulation, Analysis, and Synthesis of Heterogeneous Pipelined Architectures, Master\u27s Thesis, August 2006

Pipelining an algorithmis a popularmethod of increasing the performance of many computation-intensive applications. Often, one wants to form pipelines composed mostly of commonly used simple building blocks such as DSP components, simple math operations, encryption, or pattern matching stages. Additionally, one may desire to map these processing tasks to different computational resources based on their relative performance attributes (e.g., DSP operations on an FPGA). Auto-Pipe is composed of the X Language, a flexible interface language that aids the description of complex dataflow topologies (including pipelines); X-Com, a compiler for the X Language; X-Sim, a tool for modeling pipelined architectures based on measured, simulated, or derived task and communications behavior; X-Opt, a tool to optimize X applications under various metrics; and X-Dep, a tool for the automatic deployment of X-Com- or X-Sim-generated applications to real or simulated devices. This thesis presents an overview of the Auto-Pipe system, the design and use of the X Language, and an implementation of X-Com. Applications developed using the X Language are presented which demonstrate the effectiveness of describing algorithms using X, and the effectiveness of the Auto-Pipe development flow in analyzing and improving the performance of an application

When and how to develop domain-specific languages

Domain-specific languages (DSLs) are languages tailored to a specific application domain. They offer substantial gains in expressiveness and ease of use compared with general purpose programming languages in their domain of application. DSL development is hard, requiring both domain knowledge and language development expertise. Few people have both. Not surprisingly, the decision to develop a DSL is often postponed indefinitely, if considered at all, and most DSLs never get beyond the application library stage. While many articles have been written on the development of particular DSLs, there is very limited literature on DSL development methodologies and many questions remain regarding when and how to develop a DSL. To aid the DSL developer, we identify patterns in the decision, analysis, design, and implementation phases of DSL development. Our patterns try to improve on and extend earlier work on DSL design patterns, in particular by Spinellis (2001). We also discuss domain analysis tools and language development systems that may help to speed up DSL development. Finally, we state a number of open problems