Characteristics of pattern formation and evolution in approximations of physarum transport networks

Most studies of pattern formation place particular emphasis on its role in the development of complex multicellular body plans. In simpler organisms, however, pattern formation is intrinsic to growth and behavior. Inspired by one such organism, the true slime mold Physarum polycephalum, we present examples of complex emergent pattern formation and evolution formed by a population of simple particle-like agents. Using simple local behaviors based on Chemotaxis, the mobile agent population spontaneously forms complex and dynamic transport networks. By adjusting simple model parameters, maps of characteristic patterning are obtained. Certain areas of the parameter mapping yield particularly complex long term behaviors, including the circular contraction of network lacunae and bifurcation of network paths to maintain network connectivity. We demonstrate the formation of irregular spots and labyrinthine and reticulated patterns by chemoattraction. Other Turing-like patterning schemes were obtained by using chemorepulsion behaviors, including the self-organization of regular periodic arrays of spots, and striped patterns. We show that complex pattern types can be produced without resorting to the hierarchical coupling of reaction-diffusion mechanisms. We also present network behaviors arising from simple pre-patterning cues, giving simple examples of how the emergent pattern formation processes evolve into networks with functional and quasi-physical properties including tensionlike effects, network minimization behavior, and repair to network damage. The results are interpreted in relation to classical theories of biological pattern formation in natural systems, and we suggest mechanisms by which emergent pattern formation processes may be used as a method for spatially represented unconventional computation. © 2010 Massachusetts Institute of Technology

Asymmetries arising from the space-filling nature of vascular networks

Cardiovascular networks span the body by branching across many generations of vessels. The resulting structure delivers blood over long distances to supply all cells with oxygen via the relatively short-range process of diffusion at the capillary level. The structural features of the network that accomplish this density and ubiquity of capillaries are often called space-filling. There are multiple strategies to fill a space, but some strategies do not lead to biologically adaptive structures by requiring too much construction material or space, delivering resources too slowly, or using too much power to move blood through the system. We empirically measure the structure of real networks (18 humans and 1 mouse) and compare these observations with predictions of model networks that are space-filling and constrained by a few guiding biological principles. We devise a numerical method that enables the investigation of space-filling strategies and determination of which biological principles influence network structure. Optimization for only a single principle creates unrealistic networks that represent an extreme limit of the possible structures that could be observed in nature. We first study these extreme limits for two competing principles, minimal total material and minimal path lengths. We combine these two principles and enforce various thresholds for balance in the network hierarchy, which provides a novel approach that highlights the trade-offs faced by biological networks and yields predictions that better match our empirical data.Comment: 17 pages, 15 figure

Efficient Snapshot Retrieval over Historical Graph Data

We address the problem of managing historical data for large evolving information networks like social networks or citation networks, with the goal to enable temporal and evolutionary queries and analysis. We present the design and architecture of a distributed graph database system that stores the entire history of a network and provides support for efficient retrieval of multiple graphs from arbitrary time points in the past, in addition to maintaining the current state for ongoing updates. Our system exposes a general programmatic API to process and analyze the retrieved snapshots. We introduce DeltaGraph, a novel, extensible, highly tunable, and distributed hierarchical index structure that enables compactly recording the historical information, and that supports efficient retrieval of historical graph snapshots for single-site or parallel processing. Along with the original graph data, DeltaGraph can also maintain and index auxiliary information; this functionality can be used to extend the structure to efficiently execute queries like subgraph pattern matching over historical data. We develop analytical models for both the storage space needed and the snapshot retrieval times to aid in choosing the right parameters for a specific scenario. In addition, we present strategies for materializing portions of the historical graph state in memory to further speed up the retrieval process. Secondly, we present an in-memory graph data structure called GraphPool that can maintain hundreds of historical graph instances in main memory in a non-redundant manner. We present a comprehensive experimental evaluation that illustrates the effectiveness of our proposed techniques at managing historical graph information

Learning algorithms for the control of routing in integrated service communication networks

There is a high degree of uncertainty regarding the nature of traffic on future integrated service networks. This uncertainty motivates the use of adaptive resource allocation policies that can take advantage of the statistical fluctuations in the traffic demands. The adaptive control mechanisms must be 'lightweight', in terms of their overheads, and scale to potentially large networks with many traffic flows. Adaptive routing is one form of adaptive resource allocation, and this thesis considers the application of Stochastic Learning Automata (SLA) for distributed, lightweight adaptive routing in future integrated service communication networks. The thesis begins with a broad critical review of the use of Artificial Intelligence (AI) techniques applied to the control of communication networks. Detailed simulation models of integrated service networks are then constructed, and learning automata based routing is compared with traditional techniques on large scale networks. Learning automata are examined for the 'Quality-of-Service' (QoS) routing problem in realistic network topologies, where flows may be routed in the network subject to multiple QoS metrics, such as bandwidth and delay. It is found that learning automata based routing gives considerable blocking probability improvements over shortest path routing, despite only using local connectivity information and a simple probabilistic updating strategy. Furthermore, automata are considered for routing in more complex environments spanning issues such as multi-rate traffic, trunk reservation, routing over multiple domains, routing in high bandwidth-delay product networks and the use of learning automata as a background learning process. Automata are also examined for routing of both 'real-time' and 'non-real-time' traffics in an integrated traffic environment, where the non-real-time traffic has access to the bandwidth 'left over' by the real-time traffic. It is found that adopting learning automata for the routing of the real-time traffic may improve the performance to both real and non-real-time traffics under certain conditions. In addition, it is found that one set of learning automata may route both traffic types satisfactorily. Automata are considered for the routing of multicast connections in receiver-oriented, dynamic environments, where receivers may join and leave the multicast sessions dynamically. Automata are shown to be able to minimise the average delay or the total cost of the resulting trees using the appropriate feedback from the environment. Automata provide a distributed solution to the dynamic multicast problem, requiring purely local connectivity information and a simple updating strategy. Finally, automata are considered for the routing of multicast connections that require QoS guarantees, again in receiver-oriented dynamic environments. It is found that the distributed application of learning automata leads to considerably lower blocking probabilities than a shortest path tree approach, due to a combination of load balancing and minimum cost behaviour

Mathematical Imaging and Surface Processing

Within the last decade image and geometry processing have become increasingly rigorous with solid foundations in mathematics. Both areas are research fields at the intersection of different mathematical disciplines, ranging from geometry and calculus of variations to PDE analysis and numerical analysis. The workshop brought together scientists from all these areas and a fruitful interplay took place. There was a lively exchange of ideas between geometry and image processing applications areas, characterized in a number of ways in this workshop. For example, optimal transport, first applied in computer vision is now used to define a distance measure between 3d shapes, spectral analysis as a tool in image processing can be applied in surface classification and matching, and so on. We have also seen the use of Riemannian geometry as a powerful tool to improve the analysis of multivalued images. This volume collects the abstracts for all the presentations covering this wide spectrum of tools and application domains

Neocortical Axon Arbors Trade-off Material and Conduction Delay Conservation

The brain contains a complex network of axons rapidly communicating information between billions of synaptically connected neurons. The morphology of individual axons, therefore, defines the course of information flow within the brain. More than a century ago, Ramón y Cajal proposed that conservation laws to save material (wire) length and limit conduction delay regulate the design of individual axon arbors in cerebral cortex. Yet the spatial and temporal communication costs of single neocortical axons remain undefined. Here, using reconstructions of in vivo labelled excitatory spiny cell and inhibitory basket cell intracortical axons combined with a variety of graph optimization algorithms, we empirically investigated Cajal's conservation laws in cerebral cortex for whole three-dimensional (3D) axon arbors, to our knowledge the first study of its kind. We found intracortical axons were significantly longer than optimal. The temporal cost of cortical axons was also suboptimal though far superior to wire-minimized arbors. We discovered that cortical axon branching appears to promote a low temporal dispersion of axonal latencies and a tight relationship between cortical distance and axonal latency. In addition, inhibitory basket cell axonal latencies may occur within a much narrower temporal window than excitatory spiny cell axons, which may help boost signal detection. Thus, to optimize neuronal network communication we find that a modest excess of axonal wire is traded-off to enhance arbor temporal economy and precision. Our results offer insight into the principles of brain organization and communication in and development of grey matter, where temporal precision is a crucial prerequisite for coincidence detection, synchronization and rapid network oscillations

Space-Time Continuous Models of Swarm Robotic Systems: Supporting Global-to-Local Programming

A generic model in as far as possible mathematical closed-form was developed that predicts the behavior of large self-organizing robot groups (robot swarms) based on their control algorithm. In addition, an extensive subsumption of the relatively young and distinctive interdisciplinary research field of swarm robotics is emphasized. The connection to many related fields is highlighted and the concepts and methods borrowed from these fields are described shortly

Benchmarking a wide spectrum of metaheuristic techniques for the radio network design problem

The radio network design (RND) is an NP-hard optimization problem which consists of the maximization of the coverage of a given area while minimizing the base station deployment. Solving RND problems efficiently is relevant to many fields of application and has a direct impact in the engineering, telecommunication, scientific, and industrial areas. Numerous works can be found in the literature dealing with the RND problem, although they all suffer from the same shortfall: a noncomparable efficiency. Therefore, the aim of this paper is twofold: first, to offer a reliable RND comparison base reference in order to cover a wide algorithmic spectrum, and, second, to offer a comprehensible insight into accurate comparisons of efficiency, reliability, and swiftness of the different techniques applied to solve the RND problem. In order to achieve the first aim we propose a canonical RND problem formulation driven by two main directives: technology independence and a normalized comparison criterion. Following this, we have included an exhaustive behavior comparison between 14 different techniques. Finally, this paper indicates algorithmic trends and different patterns that can be observed through this analysis.Publicad

GMPLS-OBS interoperability and routing acalability in internet

The popularization of Internet has turned the telecom world upside down over the last two decades. Network operators, vendors and service providers are being challenged to adapt themselves to Internet requirements in a way to properly serve the huge number of demanding users (residential and business). The Internet (data-oriented network) is supported by an IP packet-switched architecture on top of a circuit-switched, optical-based architecture (voice-oriented network), which results in a complex and rather costly infrastructure to the transport of IP traffic (the dominant traffic nowadays). In such a way, a simple and IP-adapted network architecture is desired. From the transport network perspective, both Generalized Multi-Protocol Label Switching (GMPLS) and Optical Burst Switching (OBS) technologies are part of the set of solutions to progress towards an IP-over-WDM architecture, providing intelligence in the control and management of resources (i.e. GMPLS) as well as a good network resource access and usage (i.e. OBS). The GMPLS framework is the key enabler to orchestrate a unified optical network control and thus reduce network operational expenses (OPEX), while increasing operator's revenues. Simultaneously, the OBS technology is one of the well positioned switching technologies to realize the envisioned IP-over-WDM network architecture, leveraging on the statistical multiplexing of data plane resources to enable sub-wavelength in optical networks. Despite of the GMPLS principle of unified control, little effort has been put on extending it to incorporate the OBS technology and many open questions still remain. From the IP network perspective, the Internet is facing scalability issues as enormous quantities of service instances and devices must be managed. Nowadays, it is believed that the current Internet features and mechanisms cannot cope with the size and dynamics of the Future Internet. Compact Routing is one of the main breakthrough paradigms on the design of a routing system scalable with the Future Internet requirements. It intends to address the fundamental limits of current stretch-1 shortest-path routing in terms of RT scalability (aiming at sub-linear growth). Although "static" compact routing works fine, scaling logarithmically on the number of nodes even in scale-free graphs such as Internet, it does not handle dynamic graphs. Moreover, as multimedia content/services proliferate, the multicast is again under the spotlight as bandwidth efficiency and low RT sizes are desired. However, it makes the problem even worse as more routing entries should be maintained. In a nutshell, the main objective of this thesis in to contribute with fully detailed solutions dealing both with i) GMPLS-OBS control interoperability (Part I), fostering unified control over multiple switching domains and reduce redundancy in IP transport. The proposed solution overcomes every interoperability technology-specific issue as well as it offers (absolute) QoS guarantees overcoming OBS performance issues by making use of the GMPLS traffic-engineering (TE) features. Keys extensions to the GMPLS protocol standards are equally approached; and ii) new compact routing scheme for multicast scenarios, in order to overcome the Future Internet inter-domain routing system scalability problem (Part II). In such a way, the first known name-independent (i.e. topology unaware) compact multicast routing algorithm is proposed. On the other hand, the AnyTraffic Labeled concept is also introduced saving on forwarding entries by sharing a single forwarding entry to unicast and multicast traffic type. Exhaustive simulation campaigns are run in both cases in order to assess the reliability and feasible of the proposals