Mapping and classification of ecologically sensitive marine habitats using unmanned aerial vehicle (UAV) imagery and object-based image analysis (OBIA)

Nowadays, emerging technologies, such as long-range transmitters, increasingly miniaturized components for positioning, and enhanced imaging sensors, have led to an upsurge in the availability of new ecological applications for remote sensing based on unmanned aerial vehicles (UAVs), sometimes referred to as “drones”. In fact, structure-from-motion (SfM) photogrammetry coupled with imagery acquired by UAVs offers a rapid and inexpensive tool to produce high-resolution orthomosaics, giving ecologists a new way for responsive, timely, and cost-effective monitoring of ecological processes. Here, we adopted a lightweight quadcopter as an aerial survey tool and object-based image analysis (OBIA) workflow to demonstrate the strength of such methods in producing very high spatial resolution maps of sensitive marine habitats. Therefore, three different coastal environments were mapped using the autonomous flight capability of a lightweight UAV equipped with a fully stabilized consumer-grade RGB digital camera. In particular we investigated a Posidonia oceanica seagrass meadow, a rocky coast with nurseries for juvenile fish, and two sandy areas showing biogenic reefs of Sabelleria alveolata. We adopted, for the first time, UAV-based raster thematic maps of these key coastal habitats, produced after OBIA classification, as a new method for fine-scale, low-cost, and time saving characterization of sensitive marine environments which may lead to a more effective and efficient monitoring and management of natural resource

Workflow Monitoring based on Multi-view Reconstruction

Activity recognition has primarily addressed the identification of either actions or well-defined interactions among objects in a scene. In this work, we extend the scope to the study of workflow monitoring. In a workflow, ordered groups of activities (phases) with different durations take place in a constrained environment and create temporal patterns across the workflow instances. We address the problem of recognizing phases, based on exemplary recordings. We propose to use Workflow-HMMs, a form of HMMs augmented with phase probability variables that model the complete workflow process. This model takes into account the full temporal context which improves on-line recognition of the phases, especially in case of partial labeling. Targeted applications are workflow monitoring in hospitals and factories, where common action recognition approaches are difficult to apply. To avoid interfering with the normal workflow, we capture the activity of a room with a multiple-camera system. Additionally, we propose to rely on real-time low-level features (3D motion flow) to maintain a generic approach. We demonstrate our methods on sequences from medical procedures performed in a mock-up operating room. The sequences follow a complex workflow, containing various alternatives

Unmanned Aerial Vehicle (UAV) for monitoring soil erosion in Morocco

This article presents an environmental remote sensing application using a UAV that is specifically aimed at reducing the data gap between field scale and satellite scale in soil erosion monitoring in Morocco. A fixed-wing aircraft type Sirius I (MAVinci, Germany) equipped with a digital system camera (Panasonic) is employed. UAV surveys are conducted over different study sites with varying extents and flying heights in order to provide both very high resolution site-specific data and lower-resolution overviews, thus fully exploiting the large potential of the chosen UAV for multi-scale mapping purposes. Depending on the scale and area coverage, two different approaches for georeferencing are used, based on high-precision GCPs or the UAV’s log file with exterior orientation values respectively. The photogrammetric image processing enables the creation of Digital Terrain Models (DTMs) and ortho-image mosaics with very high resolution on a sub-decimetre level. The created data products were used for quantifying gully and badland erosion in 2D and 3D as well as for the analysis of the surrounding areas and landscape development for larger extents

The LONI QC System: A Semi-Automated, Web-Based and Freely-Available Environment for the Comprehensive Quality Control of Neuroimaging Data.

Quantifying, controlling, and monitoring image quality is an essential prerequisite for ensuring the validity and reproducibility of many types of neuroimaging data analyses. Implementation of quality control (QC) procedures is the key to ensuring that neuroimaging data are of high-quality and their validity in the subsequent analyses. We introduce the QC system of the Laboratory of Neuro Imaging (LONI): a web-based system featuring a workflow for the assessment of various modality and contrast brain imaging data. The design allows users to anonymously upload imaging data to the LONI-QC system. It then computes an exhaustive set of QC metrics which aids users to perform a standardized QC by generating a range of scalar and vector statistics. These procedures are performed in parallel using a large compute cluster. Finally, the system offers an automated QC procedure for structural MRI, which can flag each QC metric as being 'good' or 'bad.' Validation using various sets of data acquired from a single scanner and from multiple sites demonstrated the reproducibility of our QC metrics, and the sensitivity and specificity of the proposed Auto QC to 'bad' quality images in comparison to visual inspection. To the best of our knowledge, LONI-QC is the first online QC system that uniquely supports the variety of functionality where we compute numerous QC metrics and perform visual/automated image QC of multi-contrast and multi-modal brain imaging data. The LONI-QC system has been used to assess the quality of large neuroimaging datasets acquired as part of various multi-site studies such as the Transforming Research and Clinical Knowledge in Traumatic Brain Injury (TRACK-TBI) Study and the Alzheimer's Disease Neuroimaging Initiative (ADNI). LONI-QC's functionality is freely available to users worldwide and its adoption by imaging researchers is likely to contribute substantially to upholding high standards of brain image data quality and to implementing these standards across the neuroimaging community

Automatic detection, tracking and counting of birds in marine video content

Robust automatic detection of moving objects in a marine context is a multi-faceted problem due to the complexity of the observed scene. The dynamic nature of the sea caused by waves, boat wakes, and weather conditions poses huge challenges for the development of a stable background model. Moreover, camera motion, reflections, lightning and illumination changes may contribute to false detections. Dynamic background subtraction (DBGS) is widely considered as a solution to tackle this issue in the scope of vessel detection for maritime traffic analysis. In this paper, the DBGS techniques suggested for ships are investigated and optimized for the monitoring and tracking of birds in marine video content. In addition to background subtraction, foreground candidates are filtered by a classifier based on their feature descriptors in order to remove non-bird objects. Different types of classifiers have been evaluated and results on a ground truth labeled dataset of challenging video fragments show similar levels of precision and recall of about 95% for the best performing classifier. The remaining foreground items are counted and birds are tracked along the video sequence using spatio-temporal motion prediction. This allows marine scientists to study the presence and behavior of birds

3D scanning, modelling and printing of ultra-thin nacreous shells from Jericho: a case study of small finds documentation in archaeology

This paper springs out from a collaborative project jointly carried out by the FabLab Saperi&Co and the Museum of Near East, Egypt and Mediterranean of Sapienza University of Rome focused at producing replicas of ultra-thin archeological finds with a sub-millimetric precision. The main technological challenge of this project was to produce models through 3D optical scanning (photogrammetry) and to print faithful replicas with additive manufacturing. The objects chosen for the trial were five extremely fragile and ultra-thin nacreous shells retrieved in Tell es-Sultan/ancient Jericho by the Italian-Palestinian Expedition in spring 2017, temporarily on exhibit in the Museum. The experiment proved to be successful, and the scanning, modeling and printing of the shells also allowed some observations on their possible uses in research and museum activities