560 research outputs found

    White Blood Cell Segmentation by Circle Detection Using Electromagnetism-Like Optimization

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    Medical imaging is a relevant field of application of image processing algorithms. In particular, the analysis of white blood cell (WBC) images has engaged researchers from fields of medicine and computer vision alike. Since WBCs can be approximated by a quasicircular form, a circular detector algorithm may be successfully applied. This paper presents an algorithm for the automatic detection of white blood cells embedded into complicated and cluttered smear images that considers the complete process as a circle detection problem. The approach is based on a nature-inspired technique called the electromagnetism-like optimization (EMO) algorithm which is a heuristic method that follows electromagnetism principles for solving complex optimization problems. The proposed approach uses an objective function which measures the resemblance of a candidate circle to an actual WBC. Guided by the values of such objective function, the set of encoded candidate circles are evolved by using EMO, so that they can fit into the actual blood cells contained in the edge map of the image. Experimental results from blood cell images with a varying range of complexity are included to validate the efficiency of the proposed technique regarding detection, robustness, and stability

    Soft computing applied to optimization, computer vision and medicine

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    Artificial intelligence has permeated almost every area of life in modern society, and its significance continues to grow. As a result, in recent years, Soft Computing has emerged as a powerful set of methodologies that propose innovative and robust solutions to a variety of complex problems. Soft Computing methods, because of their broad range of application, have the potential to significantly improve human living conditions. The motivation for the present research emerged from this background and possibility. This research aims to accomplish two main objectives: On the one hand, it endeavors to bridge the gap between Soft Computing techniques and their application to intricate problems. On the other hand, it explores the hypothetical benefits of Soft Computing methodologies as novel effective tools for such problems. This thesis synthesizes the results of extensive research on Soft Computing methods and their applications to optimization, Computer Vision, and medicine. This work is composed of several individual projects, which employ classical and new optimization algorithms. The manuscript presented here intends to provide an overview of the different aspects of Soft Computing methods in order to enable the reader to reach a global understanding of the field. Therefore, this document is assembled as a monograph that summarizes the outcomes of these projects across 12 chapters. The chapters are structured so that they can be read independently. The key focus of this work is the application and design of Soft Computing approaches for solving problems in the following: Block Matching, Pattern Detection, Thresholding, Corner Detection, Template Matching, Circle Detection, Color Segmentation, Leukocyte Detection, and Breast Thermogram Analysis. One of the outcomes presented in this thesis involves the development of two evolutionary approaches for global optimization. These were tested over complex benchmark datasets and showed promising results, thus opening the debate for future applications. Moreover, the applications for Computer Vision and medicine presented in this work have highlighted the utility of different Soft Computing methodologies in the solution of problems in such subjects. A milestone in this area is the translation of the Computer Vision and medical issues into optimization problems. Additionally, this work also strives to provide tools for combating public health issues by expanding the concepts to automated detection and diagnosis aid for pathologies such as Leukemia and breast cancer. The application of Soft Computing techniques in this field has attracted great interest worldwide due to the exponential growth of these diseases. Lastly, the use of Fuzzy Logic, Artificial Neural Networks, and Expert Systems in many everyday domestic appliances, such as washing machines, cookers, and refrigerators is now a reality. Many other industrial and commercial applications of Soft Computing have also been integrated into everyday use, and this is expected to increase within the next decade. Therefore, the research conducted here contributes an important piece for expanding these developments. The applications presented in this work are intended to serve as technological tools that can then be used in the development of new devices

    Automatic Detection and Quantification of WBCs and RBCs Using Iterative Structured Circle Detection Algorithm

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    Segmentation and counting of blood cells are considered as an important step that helps to extract features to diagnose some specific diseases like malaria or leukemia. The manual counting of white blood cells (WBCs) and red blood cells (RBCs) in microscopic images is an extremely tedious, time consuming, and inaccurate process. Automatic analysis will allow hematologist experts to perform faster and more accurately. The proposed method uses an iterative structured circle detection algorithm for the segmentation and counting of WBCs and RBCs. The separation of WBCs from RBCs was achieved by thresholding, and specific preprocessing steps were developed for each cell type. Counting was performed for each image using the proposed method based on modified circle detection, which automatically counted the cells. Several modifications were made to the basic (RCD) algorithm to solve the initialization problem, detecting irregular circles (cells), selecting the optimal circle from the candidate circles, determining the number of iterations in a fully dynamic way to enhance algorithm detection, and running time. The validation method used to determine segmentation accuracy was a quantitative analysis that included Precision, Recall, and F-measurement tests. The average accuracy of the proposed method was 95.3% for RBCs and 98.4% for WBCs

    Simultaneous Segmentation of Leukocyte and Erythrocyte in Microscopic Images Using a Marker-Controlled Watershed Algorithm

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    The density or quantity of leukocytes and erythrocytes in a unit volume of blood, which can be automatically measured through a computer-based microscopic image analysis system, is frequently considered an indicator of diseases. The segmentation of blood cells, as a basis of quantitative statistics, plays an important role in the system. However, many conventional methods must firstly distinguish blood cells into two types (i.e., leukocyte and erythrocyte) and segment them in independent procedures. In this paper, we present a marker-controlled watershed algorithm for simultaneously extracting the two types of blood cells to simplify operations and reduce computing time. The method consists of two steps, that is, cell nucleus segmentation and blood cell segmentation. An image enhancement technique is used to obtain the leukocyte marker. Two marker-controlled watershed algorithms are based on distance transformation and edge gradient information to acquire blood cell contour. The segmented leukocytes and erythrocytes are obtained simultaneously by classification. Experimental results demonstrate that the proposed method is fast, robust, and efficient

    An automated classification system for leukocyte morphology in acute myeloid Leukemia

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    Diagnosis of hematological malignancies and of acute myeloid leukemia in particular have undergone wide-ranging advances in recent years, driven by an increasingly detailed knowledge of its underlying biological and genetic mechanisms. Nevertheless, cytomorphologic evaluation of samples of peripheral blood and bone marrow is still an integral part of the routine diagnostic workup. Microscopic analysis of these samples has so far defied automation and is still mainly performed by human cytologists manually classifying and counting relevant cell populations. Access to this diagnostic modality is therefore limited by the number and availability of educated cytologists. Furthermore, its results rest on judgments of examiners, which may vary according to their education and experience, rendering rigorous quantification and standardization of the method difficult. In this thesis, an approach to cytomorphologic classification is presented that aims to harness recent advances in computational image classification for leukocyte differentiation using Deep Learning techniques that derive from the domain of Artificial Intelligence. In a first stage of the project, peripheral blood smear samples from both AML patients and controls were scanned using techniques from digital pathology. Experienced cytologists from the Laboratory of Leukemia Diagnostics at the LMU Klinikum annotated the digitized samples according to a scheme of 15 morphological categories derived from standard routine diagnostics. The resulting set of over 18,000 annotated single-cell images is the largest public database of leukocyte morphologies in leukemia available today. In a second step, the compiled dataset was used to develop a neural network that is able to classify leukocytes into the standard morphological scheme. Evaluation of network predictions show that the network performs well at the classification task for most clinically relevant categories, with an error pattern similar to that of human examiners. The network can also be employed to answer two questions of immediate clinical relevance, namely if a given single-cell image shows a blast-like cell, or if it belongs to the set of atypical cells which are not present in peripheral blood smears under physiological conditions. At these questions, the network is found to show similar and slightly better performance compared to the human examiner. These results show the potential of Deep Learning techniques in the field of hematological diagnostics and suggest avenues for their further development as a helpful tool of leukemia diagnostics.In der Diagnostik hämatologischer Erkrankungen wie der akuten myeloischen Leukämie haben sich in den vergangenen Jahren bedeutende Fortschritte ergeben, die vor allem auf einem vertieften Verständnis ihrer biologischen und genetischen Ursachen beruhen. Trotzdem spielt die zytomorphologische Untersuchung von Blut- und Knochenmarkspräparaten nach wie vor eine zentrale Rolle in der diagnostischen Aufarbeitung. Die mikroskopische Begutachtung dieser Präparate konnte bisher nicht automatisiert werden und erfolgt nach wie vor durch menschliche Befunder, die eine manuelle Differentierung und Auszählung relevanter Zelltypen vornehmen. Daher ist der Zugang zu zytomorphologischen Untersuchungen durch die Zahl verfügbarer zytologischer Befunder begrenzt. Darüber hinaus beruht die Beurteilung der Präparate auf der individuellen Einschätzung der Befunder und ist somit von deren Ausbildung und Erfahrung abhängig, was eine standardisierte und quantitative Auswertung der Morphologie zusätzlich erschwert. Ziel der vorliegenden Arbeit ist es, ein computerbasiertes System zu entwickeln, die die morphologische Differenzierung von Leukozyten unterstützt. Zu diesem Zweck wird auf in den letzten Jahren entwickelte leistungsfähige Algorithmen aus dem Bereich der Künstlichen Intelligenz, insbesondere des sogenannten Tiefen Lernens zurückgegriffen. In einem ersten Schritt des Projekts wurden periphere Blutausstriche von AML-Patienten und Kontrollen mit Methoden der digitalen Pathologie erfasst. Erfahrene Befunder aus dem Labor für Leukämiediagnostik am LMU-Klinikum München annotierten die digitalisierten Präparate und differenzierten sie in ein 15-klassiges, aus der Routinediagnostik stammendes Standardschema. Auf diese Weise wurde mit über 18,000 morphologisch annotierten Leukozyten der aktuell größte öffentlich verfügbare Datensatz relevanter Einzelzellbilder zusammengestellt. In einer zweiten Phase des Projekts wurde dieser Datensatz verwendet, um Algorithmen vom Typ neuronaler Faltungsnetze zur Klassifikation von Einzelzellbilden zu trainieren. Eine Analyse ihrer Vorhersagen zeigt dass diese Netzwerke Einzelzellbilder der meisten Zellklassen sehr erfolgreich differenzieren können. Für falsch klassifizierte Bilder ähnelt ihr Fehlermuster dem menschlicher Befunder. Neben der Klassifikation einzelner Zellen erlauben die Netzwerke auch die Beantwortung gröberer, binärer Fragestellungen, etwa ob eine bestimmte Zelle blastären Charakter hat oder zu den morphologischen Klassen gehört die in einem peripheren Blutausstrich nicht unter physiologischen Bedingungen vorkommen. Bei diesen Fragen zeigen die Netzwerke eine ähnliche und leicht bessere Leistung als der menschliche Befunder. Die Ergebnisse dieser Arbeit illustrieren das Potential von Methoden der künstlichen Intelligenz auf dem Gebiet der Hämatologie und eröffnen Möglichkeiten zu ihrer Weiterentwicklung zu einem praktischen Hilfsmittel der Leukämiediagnostik

    Developing advanced mathematical models for detecting abnormalities in 2D/3D medical structures.

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    Detecting abnormalities in two-dimensional (2D) and three-dimensional (3D) medical structures is among the most interesting and challenging research areas in the medical imaging field. Obtaining the desired accurate automated quantification of abnormalities in medical structures is still very challenging. This is due to a large and constantly growing number of different objects of interest and associated abnormalities, large variations of their appearances and shapes in images, different medical imaging modalities, and associated changes of signal homogeneity and noise for each object. The main objective of this dissertation is to address these problems and to provide proper mathematical models and techniques that are capable of analyzing low and high resolution medical data and providing an accurate, automated analysis of the abnormalities in medical structures in terms of their area/volume, shape, and associated abnormal functionality. This dissertation presents different preliminary mathematical models and techniques that are applied in three case studies: (i) detecting abnormal tissue in the left ventricle (LV) wall of the heart from delayed contrast-enhanced cardiac magnetic resonance images (MRI), (ii) detecting local cardiac diseases based on estimating the functional strain metric from cardiac cine MRI, and (iii) identifying the abnormalities in the corpus callosum (CC) brain structure—the largest fiber bundle that connects the two hemispheres in the brain—for subjects that suffer from developmental brain disorders. For detecting the abnormal tissue in the heart, a graph-cut mathematical optimization model with a cost function that accounts for the object’s visual appearance and shape is used to segment the the inner cavity. The model is further integrated with a geometric model (i.e., a fast marching level set model) to segment the outer border of the myocardial wall (the LV). Then the abnormal tissue in the myocardium wall (also called dead tissue, pathological tissue, or infarct area) is identified based on a joint Markov-Gibbs random field (MGRF) model of the image and its region (segmentation) map that accounts for the pixel intensities and the spatial interactions between the pixels. Experiments with real in-vivo data and comparative results with ground truth (identified by a radiologist) and other approaches showed that the proposed framework can accurately detect the pathological tissue and can provide useful metrics for radiologists and clinicians. To estimate the strain from cardiac cine MRI, a novel method based on tracking the LV wall geometry is proposed. To achieve this goal, a partial differential equation (PDE) method is applied to track the LV wall points by solving the Laplace equation between the LV contours of each two successive image frames over the cardiac cycle. The main advantage of the proposed tracking method over traditional texture-based methods is its ability to track the movement and rotation of the LV wall based on tracking the geometric features of the inner, mid-, and outer walls of the LV. This overcomes noise sources that come from scanner and heart motion. To identify the abnormalities in the CC from brain MRI, the CCs are aligned using a rigid registration model and are segmented using a shape-appearance model. Then, they are mapped to a simple unified space for analysis. This work introduces a novel cylindrical mapping model, which is conformal (i.e., one to one transformation and bijective), that enables accurate 3D shape analysis of the CC in the cylindrical domain. The framework can detect abnormalities in all divisions of the CC (i.e., splenium, rostrum, genu and body). In addition, it offers a whole 3D analysis of the CC abnormalities instead of only area-based analysis as done by previous groups. The initial classification results based on the centerline length and CC thickness suggest that the proposed CC shape analysis is a promising supplement to the current techniques for diagnosing dyslexia. The proposed techniques in this dissertation have been successfully tested on complex synthetic and MR images and can be used to advantage in many of today’s clinical applications of computer-assisted medical diagnostics and intervention

    Microwave Imaging of The Neck by Means of Inverse-Scattering Techniques

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    In recent decades, in the field of applied electromagnetism, there has been a significant interest in the development of non-invasive diagnostic methods through the use of electromagnetic waves, especially at microwave frequencies [1]. Microwave imaging (MWI) - considered for a long period an emerging technique - has potential- ities in numerous, and constantly increasing, applications in different areas, ranging from civil and industrial engineering, with non-destructive testing and evaluations (example e.g., monitoring contamination in food, sub-surface imaging based on both terrestrial and space platforms; detection of cracks and defects in structures and equipments of various kinds; antennas diagnostics, etc. ), up to the biomedical field [2], [3], [4], [5], [6], [7]. One of the first applications of microwave imaging (MWI) in the medical field was the detection of breast tumors [8], [9], [10], [11], [12], [13], [14], [15], [16], [17]. Subsequently, brain stroke detection has received great attention [18],[19], [20], too. Other possible clinical applications include imaging of torso, arms, and other body parts [21], [22], [23], [24]. The standard diagnostic method are computerized tomography (CT), nuclear magnetic resonance (NMR) and X-rays. Although these consolidated techniques are able to provide extraordinary diagnostic results, some limitations still exist that stimulate the continuous research of new imaging solutions. In this context, MWI can be overcome some limitations of these techniques, such as the ionizing radiations in the CT and X-rays or the disadvantages of being expensive, in the NMR case. This motivates the study of MWI methods and systems, at least as a complementary diagnostic tools. The aim of electromagnetic diagnostic techniques is to determine physical param- eters (such as the electrical conductivity and the dielectric permittivity of materials) and/or geometrics of the objects under test, which are suppose contained within a certain space region, sometimes denoted as "investigation domain". In particular, by means of a properly designed transmitting antenna, the object under test is illuminated by an electromagnetic radiation. The interaction between the incident radiation and the target causes the so-called electromagnetic scattering phenomena. The field generated by this interaction can be measured around the object by means of one or more receiving antennas, placed in what is sometimes defined as the "ob- servation domain". Starting from the measured values of the scattering field, it is possible to reconstruct the fundamental properties of the test object by solving an inverse electromagnetic scattering problem. As it is well known, the inverse problem is non-linear and strongly ill-posed, unless specific approximations are used, which can be applied in specific situations. In several cases, two-dimensional configurations (2D) can be assumed, i.e., the inspected target has a cylindrical shape, at least as a first approximation. More- over, often the target is illuminated by antennas capable of generating a transverse magnetic (TM) electromagnetic field [25]. These assumptions reduces the problem from a vector and three-dimensional problem to a 2D and scalar one, since it turns out that the only significant the field components are those co-polarized with the incident wave and directed along to the cylinder axis. In recent years, several methods and algorithms that allow an efficient resolution of the equations of electromagnetic inverse scattering problem have been developed. The proposed approaches can be mainly grouped into two categories: qualitative and quantitative techniques. Qualitative procedures, such as the delay-and-sum technique [26], the linear sampling method [27], and the orthogonality sampling method [28], usually provides reconstructions that allows to extract only some parameters of the targets, such as position, dimensions and shape. However, they are in most cases fast and computationally efficient.On the contrary, quantitative methods allows in principle to retrieve the full distributions of the dielectric properties of the object under test, which allows to also obtain additional information on the materials composing the inspected scenario. Such approaches are often computationally very demanding [25]. Qualitative and quantitative approaches can be combined in order to develop hybrid algorithms [29], [30], [31], [32], [33], [34]. An example is represented by the combination of a delay-and-sum qualitative focusing technique [35], [36], [37] with a quantitative Newton scheme performing a regularization in the framework of the Lp Banach spaces [38], [39], [40]. Holographic microwave imaging techniques are other important qualitative meth- ods. In this case, the processing of data is performed by using through direct and inverse Fourier transforms in order to obtain a map of the inspected target. As previously mentioned, quantitative approaches aim at retrieving the distributions of the dielectric properties of the scene under test, although they can be significantly more time-consuming especially in 3D imaging. Among them, Newton- type approach are often considered [39], [40]. Recently, artificial neural networks (ANNs) have been considered as powerful tools for quantitative MWI. The first proposed ANNs were developed as shallow network architectures, in which one or at least two hidden layers were considered [41], [42]. Successively, deep neural networks have been proposed, in which more complex fully-connected architecture are adopted. In this framework, Convolutional Neural Networks (CNNs) have been developed as more complex topologies, for classification problems or for solving the inverse scattering problems [43], [44], [45], [46], [47], [48], [49]. In the inverse scattering problems, the CNNs often require a preliminary image retrieved by other techniques [43], [44], [47], [50], [51] and do not allow directly inver- sion from the scattered electric fields collected by the receiving antennas. Standard CNNs are developed for different applications. Examples are represented by Unet [52], ResNet [53] and VGG [54]. This Thesis is devoted to the application of MWI techniques to inspect the human neck. Several pathologic conditions can affect this part of the body, and a non-invasive and nonionizing imaging method can be useful for monitoring patients. The first pathological condition studied in this Thesis is the cervical myelopathy [55], which is a disease that damages the first part of the spinal cord, between the C3 and C7 cervical vertebrae located near the head [56]. The spinal cord has an important function in the body, since it represents the principal actor in the nervous system. For this reason, it is "protected" inside the spinal canal [57]. A first effect of cervical myelopathy is a reduction of the spinal canal sagittal diameter, which may be caused by different factors [58]. Some patients are asymptomatic and for this reason a continuous monitoring could be very helpful for evaluating the pathology progression. To this end, the application of qualitative and quantitative MWI approaches are proposed in this document. The second neck pathology studied in this Thesis is the neck tumor, in particular supraglottic laryngeal carcinoma [59], thyroid cancer [60] and cervical lymph node metastases [61]. These kinds of tumors are frequently occurring and shown a 50% 5-year survival probability [61],[62], [63], [64]. Fully-connected neural network are proposed for neck tumor detection. The Thesis is organized as follows. In Chapter 2, the relevant concepts of the electromagnetic theory are recalled. Chapter 3 describes the developed inversion algorithms. It also reports an extensive validation considering both synthetic and experimental data. Detailed data about the imaging approach based on machine learning are provided in Chapter 4. This chapter also reports the results obtained in a set of simulations and experiments. Finally, some conclusions are drawn in Chapter 5

    Curve Skeleton and Moments of Area Supported Beam Parametrization in Multi-Objective Compliance Structural Optimization

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    This work addresses the end-to-end virtual automation of structural optimization up to the derivation of a parametric geometry model that can be used for application areas such as additive manufacturing or the verification of the structural optimization result with the finite element method. A holistic design in structural optimization can be achieved with the weighted sum method, which can be automatically parameterized with curve skeletonization and cross-section regression to virtually verify the result and control the local size for additive manufacturing. is investigated in general. In this paper, a holistic design is understood as a design that considers various compliances as an objective function. This parameterization uses the automated determination of beam parameters by so-called curve skeletonization with subsequent cross-section shape parameter estimation based on moments of area, especially for multi-objective optimized shapes. An essential contribution is the linking of the parameterization with the results of the structural optimization, e.g., to include properties such as boundary conditions, load conditions, sensitivities or even density variables in the curve skeleton parameterization. The parameterization focuses on guiding the skeletonization based on the information provided by the optimization and the finite element model. In addition, the cross-section detection considers circular, elliptical, and tensor product spline cross-sections that can be applied to various shape descriptors such as convolutional surfaces, subdivision surfaces, or constructive solid geometry. The shape parameters of these cross-sections are estimated using stiffness distributions, moments of area of 2D images, and convolutional neural networks with a tailored loss function to moments of area. Each final geometry is designed by extruding the cross-section along the appropriate curve segment of the beam and joining it to other beams by using only unification operations. The focus of multi-objective structural optimization considering 1D, 2D and 3D elements is on cases that can be modeled using equations by the Poisson equation and linear elasticity. This enables the development of designs in application areas such as thermal conduction, electrostatics, magnetostatics, potential flow, linear elasticity and diffusion, which can be optimized in combination or individually. Due to the simplicity of the cases defined by the Poisson equation, no experts are required, so that many conceptual designs can be generated and reconstructed by ordinary users with little effort. Specifically for 1D elements, a element stiffness matrices for tensor product spline cross-sections are derived, which can be used to optimize a variety of lattice structures and automatically convert them into free-form surfaces. For 2D elements, non-local trigonometric interpolation functions are used, which should significantly increase interpretability of the density distribution. To further improve the optimization, a parameter-free mesh deformation is embedded so that the compliances can be further reduced by locally shifting the node positions. Finally, the proposed end-to-end optimization and parameterization is applied to verify a linear elasto-static optimization result for and to satisfy local size constraint for the manufacturing with selective laser melting of a heat transfer optimization result for a heat sink of a CPU. For the elasto-static case, the parameterization is adjusted until a certain criterion (displacement) is satisfied, while for the heat transfer case, the manufacturing constraints are satisfied by automatically changing the local size with the proposed parameterization. This heat sink is then manufactured without manual adjustment and experimentally validated to limit the temperature of a CPU to a certain level.:TABLE OF CONTENT III I LIST OF ABBREVIATIONS V II LIST OF SYMBOLS V III LIST OF FIGURES XIII IV LIST OF TABLES XVIII 1. INTRODUCTION 1 1.1 RESEARCH DESIGN AND MOTIVATION 6 1.2 RESEARCH THESES AND CHAPTER OVERVIEW 9 2. PRELIMINARIES OF TOPOLOGY OPTIMIZATION 12 2.1 MATERIAL INTERPOLATION 16 2.2 TOPOLOGY OPTIMIZATION WITH PARAMETER-FREE SHAPE OPTIMIZATION 17 2.3 MULTI-OBJECTIVE TOPOLOGY OPTIMIZATION WITH THE WEIGHTED SUM METHOD 18 3. SIMULTANEOUS SIZE, TOPOLOGY AND PARAMETER-FREE SHAPE OPTIMIZATION OF WIREFRAMES WITH B-SPLINE CROSS-SECTIONS 21 3.1 FUNDAMENTALS IN WIREFRAME OPTIMIZATION 22 3.2 SIZE AND TOPOLOGY OPTIMIZATION WITH PERIODIC B-SPLINE CROSS-SECTIONS 27 3.3 PARAMETER-FREE SHAPE OPTIMIZATION EMBEDDED IN SIZE OPTIMIZATION 32 3.4 WEIGHTED SUM SIZE AND TOPOLOGY OPTIMIZATION 36 3.5 CROSS-SECTION COMPARISON 39 4. NON-LOCAL TRIGONOMETRIC INTERPOLATION IN TOPOLOGY OPTIMIZATION 41 4.1 FUNDAMENTALS IN MATERIAL INTERPOLATIONS 43 4.2 NON-LOCAL TRIGONOMETRIC SHAPE FUNCTIONS 45 4.3 NON-LOCAL PARAMETER-FREE SHAPE OPTIMIZATION WITH TRIGONOMETRIC SHAPE FUNCTIONS 49 4.4 NON-LOCAL AND PARAMETER-FREE MULTI-OBJECTIVE TOPOLOGY OPTIMIZATION 54 5. FUNDAMENTALS IN SKELETON GUIDED SHAPE PARAMETRIZATION IN TOPOLOGY OPTIMIZATION 58 5.1 SKELETONIZATION IN TOPOLOGY OPTIMIZATION 61 5.2 CROSS-SECTION RECOGNITION FOR IMAGES 66 5.3 SUBDIVISION SURFACES 67 5.4 CONVOLUTIONAL SURFACES WITH META BALL KERNEL 71 5.5 CONSTRUCTIVE SOLID GEOMETRY 73 6. CURVE SKELETON GUIDED BEAM PARAMETRIZATION OF TOPOLOGY OPTIMIZATION RESULTS 75 6.1 FUNDAMENTALS IN SKELETON SUPPORTED RECONSTRUCTION 76 6.2 SUBDIVISION SURFACE PARAMETRIZATION WITH PERIODIC B-SPLINE CROSS-SECTIONS 78 6.3 CURVE SKELETONIZATION TAILORED TO TOPOLOGY OPTIMIZATION WITH PRE-PROCESSING 82 6.4 SURFACE RECONSTRUCTION USING LOCAL STIFFNESS DISTRIBUTION 86 7. CROSS-SECTION SHAPE PARAMETRIZATION FOR PERIODIC B-SPLINES 96 7.1 PRELIMINARIES IN B-SPLINE CONTROL GRID ESTIMATION 97 7.2 CROSS-SECTION EXTRACTION OF 2D IMAGES 101 7.3 TENSOR SPLINE PARAMETRIZATION WITH MOMENTS OF AREA 105 7.4 B-SPLINE PARAMETRIZATION WITH MOMENTS OF AREA GUIDED CONVOLUTIONAL NEURAL NETWORK 110 8. FULLY AUTOMATED COMPLIANCE OPTIMIZATION AND CURVE-SKELETON PARAMETRIZATION FOR A CPU HEAT SINK WITH SIZE CONTROL FOR SLM 115 8.1 AUTOMATED 1D THERMAL COMPLIANCE MINIMIZATION, CONSTRAINED SURFACE RECONSTRUCTION AND ADDITIVE MANUFACTURING 118 8.2 AUTOMATED 2D THERMAL COMPLIANCE MINIMIZATION, CONSTRAINT SURFACE RECONSTRUCTION AND ADDITIVE MANUFACTURING 120 8.3 USING THE HEAT SINK PROTOTYPES COOLING A CPU 123 9. CONCLUSION 127 10. OUTLOOK 131 LITERATURE 133 APPENDIX 147 A PREVIOUS STUDIES 147 B CROSS-SECTION PROPERTIES 149 C CASE STUDIES FOR THE CROSS-SECTION PARAMETRIZATION 155 D EXPERIMENTAL SETUP 15

    Advanced interfaces for biomedical engineering applications in high- and low field NMR/MRI

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    Das zentrale Thema dieser Dissertation ist die Magnetresonanz(MR)-Sicherheit und MR-Kompatibilität von Bauelementen. Der Öffentlichkeit bekannt ist diese Thematik im Zusammenhang mit kommerziellen Implantaten. Die Gefahren, die sich aus den Wechselwirkungen zwischen dem MR-Tomografen (MRT) und dem Implantat ergeben, hindern viele Patienten daran, eine Untersuchung mittels MRT durchführen zu lassen. MR-Kompatibilität spielt jedoch nicht nur beim Design und der Kennzeichnung von Implantaten eine wichtige Rolle, sondern auch bei der Entwicklung von Bauelementen für die MR-Hardware. Beide Themen, Implantatinteraktionen und Hardware-Design, bilden fundamentale Aspekte dieser Arbeit. Der erste Teil befasst sich mit MRT-Wechselwirkungen von Implantaten. Die Ergebnisse einer umfangreichen Literaturrecherche zeigen, dass dringend belastbare Daten benötigt werden, um die durch MRT ausgelösten Schwingungen von Implantaten besser verstehen zu können. Dies gilt insbesondere für Vibrationen in viskoelastischen Umgebungen wie dem Gehirn. Im Rahmen dieser Arbeit wird ein neuartiges Messsystem vorgestellt, mit dem sich Schwingungen bei Standard-MRT-Aufnahmen und mit hoher Genauigkeit quantitativ messen lassen. Durch die Verwendung einer amplituden- und frequenzgesteuerten externen Stromversorgung werden die Übertragungsfunktionen implantatartiger Strukturen in viskoelastischen Umgebungen präzise bestimmt. Basierend auf den erfassten Daten wird eine Korrelation zwischen den resultierenden Schwingungsamplituden und den Zeitparametern der Aufnahmesequenz hergestellt und experimentell verifiziert. Eine wichtige Erkenntnis ist, dass die untersuchten Strukturen ein unterdämpftes Verhalten zeigen und damit resonant schwingen können. Darüber hinaus wird eine neue Kennzahl eingeführt, anhand derer die Wechselwirkung des Implantats auf Vibrationen klassifiziert werden können. Die Kennzahl gibt das normierte induzierte Drehmoment an, und ermöglicht eine einfache Berechnung des maximal zu erwartenden Drehmomoments auf jedem MRT-System. Somit können die zu erwartenden Maximalamplituden unkompliziert und für jedes System direkt ermittelt werden. Eine anderes Forschungsgebiet, die in-situ-Kernspinspektroskopie und -MRT von biologischen Untersuchungsobjekten im Hochfeld, erfordert eine neuartige MR-Messsonde sowie verbesserte MR-kompatible Substrate für die Zellkultivierung. Eine MR-Sonde mit flexibler Schnittstelle wurde entwickelt. Die endgültige Version ist mit zwei HF-Kanälen und einer Gradientenschnittstelle für flüssiggekühlte Gradienten ausgestattet. Ein Leistungsbewertung wurde mittels Standard-NMR/MRT-Experimenten durchgeführt, die eine Linienbreite von 0,5 Hz und ein mit kommerziellen Messsystem vergleichbares Signal-Rausch-Verhältnis ergaben. Der Vorteil liegt in dem integrierten Durchführungssystem innerhalb des mechanischen Rahmens. Dies bietet eine einfache Methode, zur spezifischen Erweiterung der Messsonde unter Verwendung zusätzlicher elektrischer, optischer und fluidischer Versorgungsleitungen. Auf dieser Basis können spezifische, komplexe experimentelle Hochfeld-NMR/MRT-Aufbauten in kurzer Zeit realisiert werden, ohne Bedarf nach maßgeschneiderten, teuren Sonden. Als Referenz werden zwei Messaufbauen präsentiert, bei ersterem wird die Sonde für ein Öl-Wasser-Fluidikexperiment und bei dem zweitem, in einem wasserstoffbasierten Hyperpolarisationsexperiment eingesetzt. Darüber hinaus wird ein neuartiges, MR-kompatibles 3D-Zellsubstrat basierend auf Kohlenstoff vorgestellt, das erfolgreich auf Zellwachstum und MR-Bildgebung getestet wurde. Die MRT dient des Weiteren als Analysewerkzeug, um die Erhaltung der Morphologie während der Pyrolyse zu untersuchen und zu bestätigen. Das Herstellungsprotokoll ist auf andere Vorläuferpolymere anwendbar, die den Weg zu einer Vielzahl von lithografisch strukturierten 3D-Gerüsten ebnen

    Personalized Multi-Scale Modeling of the Atria: Heterogeneities, Fiber Architecture, Hemodialysis and Ablation Therapy

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    This book targets three fields of computational multi-scale cardiac modeling. First, advanced models of the cellular atrial electrophysiology and fiber orientation are introduced. Second, novel methods to create patient-specific models of the atria are described. Third, applications of personalized models in basic research and clinical practice are presented. The results mark an important step towards the patient-specific model-based atrial fibrillation diagnosis, understanding and treatment
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