Parallel Astronomical Data Processing with Python: Recipes for multicore machines

High performance computing has been used in various fields of astrophysical research. But most of it is implemented on massively parallel systems (supercomputers) or graphical processing unit clusters. With the advent of multicore processors in the last decade, many serial software codes have been re-implemented in parallel mode to utilize the full potential of these processors. In this paper, we propose parallel processing recipes for multicore machines for astronomical data processing. The target audience are astronomers who are using Python as their preferred scripting language and who may be using PyRAF/IRAF for data processing. Three problems of varied complexity were benchmarked on three different types of multicore processors to demonstrate the benefits, in terms of execution time, of parallelizing data processing tasks. The native multiprocessing module available in Python makes it a relatively trivial task to implement the parallel code. We have also compared the three multiprocessing approaches - Pool/Map, Process/Queue, and Parallel Python. Our test codes are freely available and can be downloaded from our website.Comment: 15 pages, 7 figures, 1 table, "for associated test code, see http://astro.nuigalway.ie/staff/navtejs", Accepted for publication in Astronomy and Computin

Automatic Sequential to Parallel Code Conversion

The way software programs are being written has been redefined since the introduction of multicore processors. Software developers have started writing parallel programs that are robust and scalable. This would ensure use of processor power being made available in the form of multiple cores. Though this trend is increasing, there are legacy applications that have been developed over the past few decades. Most of these applications are inherently sequential making no use of multithreading or parallel programming. If such applications are ported to execute on the multicore hardware as they are then optimal usage of all cores is not guaranteed. Such applications would ideally utilize only one core and the other cores would remain idle, unless the operating system supports some parallelism while scheduling. Hence there is a need to convert such legacy sequential codes to their parallel versions so that multicore hardware is exploited to the fullest. In this paper we present a tool that we have developed to automatically convert a sequential C code to parallel code. This Sequential to Parallel (S2P) tool is still in the development phase. We also discuss other parallelization tools available today, compare such tools with S2P tool and present our performance analysis results on different kind of multicore hardware

Run-time parallelization and scheduling of loops

The class of problems that can be effectively compiled by parallelizing compilers is discussed. This is accomplished with the doconsider construct which would allow these compilers to parallelize many problems in which substantial loop-level parallelism is available but cannot be detected by standard compile-time analysis. We describe and experimentally analyze mechanisms used to parallelize the work required for these types of loops. In each of these methods, a new loop structure is produced by modifying the loop to be parallelized. We also present the rules by which these loop transformations may be automated in order that they be included in language compilers. The main application area of the research involves problems in scientific computations and engineering. The workload used in our experiment includes a mixture of real problems as well as synthetically generated inputs. From our extensive tests on the Encore Multimax/320, we have reached the conclusion that for the types of workloads we have investigated, self-execution almost always performs better than pre-scheduling. Further, the improvement in performance that accrues as a result of global topological sorting of indices as opposed to the less expensive local sorting, is not very significant in the case of self-execution