Understanding of crop lodging induced changes in scattering mechanisms using RADERSAT-2 and Sentinel-1 derived metrics

Abstract. Crop lodging – the bending of crop stems from the vertical – is a major yield-reducing factor in cereal crops and causes deterioration in grain quality. Accurate assessment of crop lodging is important for improving estimates of crop yield losses, informing insurance loss adjusters and influencing management decisions for subsequent seasons. The role of remote sensing data, particularly synthetic aperture radar (SAR) data has been emphasized in the recent literature for crop lodging assessment. However, the effect of lodging on SAR scattering mechanisms is still unknown. Therefore, this research aims to understand the possible change in scattering mechanisms due to lodging by investigating SAR image pairs before and after lodging. We conducted the study in 26 wheat fields in the Bonifiche Ferraresi farm, located in Jolanda di Savoia, Ferrara, Italy. We measured temporal crop biophysical (e.g. crop angle) parameters and acquired multi-incidence angle RADARSAT-2 (R-2 FQ8-27° and R-2 FQ21-41°) and Sentinel-1 (S-1 40°) images corresponding to the time of field observations. We extracted metrics of SAR scattering mechanisms from RADARSAT-2 and Sentinel-1 image pairs in different zones using the unsupervised H/α decomposition algorithm and Wishart classifier. Contrasting results were obtained at different incidence angles. Bragg surface scattering increased in the case of S-1 (6.8%), R-2 FQ8 (1.8%) while at R-2 FQ21, it decreased (8%) after lodging. The change in double bounce scattering was more prominent at low incidence angle. These observations can guide future use of SAR-based information for operational crop lodging assessment in particular, and sustainable agriculture in general

On the added value of quad-pol data in a multi-temporal crop classification framework based on RADARSAT-2 imagery

Polarimetric SAR images are a rich data source for crop mapping. However, quad-pol sensors have some limitations due to their complexity, increased data rate, and reduced coverage and revisit time. The main objective of this study was to evaluate the added value of quad-pol data in a multi-temporal crop classification framework based on SAR imagery. With this aim, three RADARSAT-2 scenes were acquired between May and June 2010. Once we analyzed the separability and the descriptive analysis of the features, an object-based supervised classification was performed using the Random Forests classification algorithm. Classification results obtained with dual-pol (VV-VH) data as input were compared to those using quad-pol data in different polarization bases (linear H-V, circular, and linear 45º), and also to configurations where several polarimetric features (Pauli and Cloude–Pottier decomposition features and co-pol coherence and phase difference) were added. Dual-pol data obtained satisfactory results, equal to those obtained with quad-pol data (in H-V basis) in terms of overall accuracy (0.79) and Kappa values (0.69). Quad-pol data in circular and linear 45º bases resulted in lower accuracies. The inclusion of polarimetric features, particularly co-pol coherence and phase difference, resulted in enhanced classification accuracies with an overall accuracy of 0.86 and Kappa of 0.79 in the best case, when all the polarimetric features were added. Improvements were also observed in the identification of some particular crops, but major crops like cereals, rapeseed, and sunflower already achieved a satisfactory accuracy with the VV-VH dual-pol configuration and obtained only minor improvements. Therefore, it can be concluded that C-band VV-VH dual-pol data is almost ready to be used operationally for crop mapping as long as at least three acquisitions in dates reflecting key growth stages representing typical phenology differences of the present crops are available. In the near future, issues regarding the classification of crops with small field sizes and heterogeneous cover (i.e., fallow and grasslands) need to be tackled to make this application fully operational

High-throughput estimation of crop traits: A review of ground and aerial phenotyping platforms

Crop yields need to be improved in a sustainable manner to meet the expected worldwide increase in population over the coming decades as well as the effects of anticipated climate change. Recently, genomics-assisted breeding has become a popular approach to food security; in this regard, the crop breeding community must better link the relationships between the phenotype and the genotype. While high-throughput genotyping is feasible at a low cost, highthroughput crop phenotyping methods and data analytical capacities need to be improved. High-throughput phenotyping offers a powerful way to assess particular phenotypes in large-scale experiments, using high-tech sensors, advanced robotics, and imageprocessing systems to monitor and quantify plants in breeding nurseries and field experiments at multiple scales. In addition, new bioinformatics platforms are able to embrace large-scale, multidimensional phenotypic datasets. Through the combined analysis of phenotyping and genotyping data, environmental responses and gene functions can now be dissected at unprecedented resolution. This will aid in finding solutions to currently limited and incremental improvements in crop yields

Remote Sensing in Agriculture: State-of-the-Art

The Special Issue on “Remote Sensing in Agriculture: State-of-the-Art” gives an exhaustive overview of the ongoing remote sensing technology transfer into the agricultural sector. It consists of 10 high-quality papers focusing on a wide range of remote sensing models and techniques to forecast crop production and yield, to map agricultural landscape and to evaluate plant and soil biophysical features. Satellite, RPAS, and SAR data were involved. This preface describes shortly each contribution published in such Special Issue

Recent Advancement of Synthetic Aperture Radar (SAR) Systems and Their Applications to Crop Growth Monitoring

Synthetic aperture radars (SARs) propagate and measure the scattering of energy at microwave frequencies. These wavelengths are sensitive to the dielectric properties and structural characteristics of targets, and less affected by weather conditions than sensors that operate in optical wavelengths. Given these advantages, SARs are appealing for use in operational crop growth monitoring. Engineering advancements in SAR technologies, new processing algorithms, and the availability of open-access SAR data, have led to the recent acceleration in the uptake of this technology to map and monitor Earth systems. The exploitation of SAR is now demonstrated in a wide range of operational land applications, including the mapping and monitoring of agricultural ecosystems. This chapter provides an overview of—(1) recent advancements in SAR systems; (2) a summary of SAR information sources, followed by the applications in crop monitoring including crop classification, crop parameter estimation, and change detection; and (3) summary and perspectives for future application development

Crop biophysical parameter retrieval from Sentinel-1 SAR data with a multi-target inversion of Water Cloud Model

Estimation of bio-and geophysical parameters from Earth observation (EO) data is essential for developing applications on crop growth monitoring. High spatio-temporal resolution and wide spatial coverage provided by EO satellite data are key inputs for operational crop monitoring. In Synthetic Aperture Radar (SAR) applications, a semi-empirical model (viz., Water Cloud Model (WCM)) is often used to estimate vegetation descriptors individually. However, a simultaneous estimation of these vegetation descriptors would be logical given their inherent correlation, which is seldom preserved in the estimation of individual descriptors by separate inversion models. This functional relationship between biophysical parameters is essential for crop yield models, given that their variations often follow different distribution throughout crop development stages. However, estimating individual parameters with independent inversion models presume a simple relationship (potentially linear) between the biophysical parameters. Alternatively, a multi-target inversion approach would be more effective for this aspect of model inversion compared to an individual estimation approach. In the present research, the multi-output support vector regression (MSVR) technique is used for inversion of the WCM from C-band dual-pol Sentinel-1 SAR data. Plant Area Index (PAI, m2 m−2) and wet biomass (W, kg m−2) are used as the vegetation descriptors in the WCM. The performance of the inversion approach is evaluated with in-situ measurements collected over the test site in Manitoba (Canada), which is a super-site in the Joint Experiment for Crop Assessment and Monitoring (JECAM) SAR inter-comparison experiment network. The validation results indicate a good correlation with acceptable error estimates (normalized root mean square error–nRMSE and mean absolute error–MAE) for both PAI and wet biomass for the MSVR approach and a better estimation with MSVR than single-target models (support vector regression–SVR). Furthermore, the correlation between PAI and wet biomass is assessed using the MSVR and SVR model. Contrary to the single output SVR, the correlation between biophysical parameters is adequately taken into account in MSVR based simultaneous inversion technique. Finally, the spatio-temporal maps for PAI and W at different growth stages indicate their variability with crop development over the test site.This research was supported in part by Shastri Indo-Candian Institute, New Delhi, India and the Spanish Ministry of Economy, Industry and Competitiveness, in part by the State Agency of Research (AEI), in part by the European Funds for Regional Development under project TEC2017-85244-C2-1-P

Quantifying Irrigated Winter Wheat LAI in Argentina Using Multiple Sentinel-1 Incidence Angles

Synthetic aperture radar (SAR) data provides an appealing opportunity for all-weather day or night Earth surface monitoring. The European constellation Sentinel-1 (S1) consisting of S1-A and S1-B satellites offers a suitable revisit time and spatial resolution for the observation of croplands from space. The C-band radar backscatter is sensitive to vegetation structure changes and phenology as well as soil moisture and roughness. It also varies depending on the local incidence angle (LIA) of the SAR acquisition’s geometry. The LIA backscatter dependency could therefore be exploited to improve the retrieval of the crop biophysical variables. The availability of S1 radar time-series data at distinct observation angles holds the feasibility to retrieve leaf area index (LAI) evolution considering spatiotemporal coverage of intensively cultivated areas. Accordingly, this research presents a workflow merging multi-date S1 smoothed data acquired at distinct LIA with a Gaussian processes regression (GPR) and a cross-validation (CV) strategy to estimate cropland LAI of irrigated winter wheat. The GPR-S1-LAI model was tested against in situ data of the 2020 winter wheat campaign in the irrigated valley of Colorador river, South of Buenos Aires Province, Argentina. We achieved adequate validation results for LAI with R2CV = 0.67 and RMSECV = 0.88 m2 m−2. The trained model was further applied to a series of S1 stacked images, generating temporal LAI maps that well reflect the crop growth cycle. The robustness of the retrieval workflow is supported by the associated uncertainties along with the obtained maps. We found that processing S1 smoothed imagery with distinct acquisition geometries permits accurate radar-based LAI modeling throughout large irrigated areas and in consequence can support agricultural management practices in cloud-prone agri-environments.EEA Hilario AscasubiFil: Caballero, Gabriel. Technological University of Uruguay (UTEC). Agri-Environmental Engineering; UruguayFil: Caballero, Gabriel. University of Valencia. Image Processing Laboratory (IPL); EspañaFil: Pezzola, Alejandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; ArgentinaFil: Winschel, Cristina Ines. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; ArgentinaFil: Casella, Alejandra. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Clima y Agua; ArgentinaFil: Sanchez Angonova, Paolo Andres. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; ArgentinaFil: Orden, Luciano. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Hilario Ascasubi; ArgentinaFil: Orden, Luciano. Universidad Miguel Hernández. Centro de Investigación e Innovación Agroalimentaria y Agroambiental. GIAAMA Reseach Group; EspañaFil: Berger, Katja. University of Valencia. Image Processing Laboratory (IPL); EspañaFil: Berger, Katja. Mantle Labs GmbH; AustriaFil: Verrelst, Jochem. University of Valencia. Image Processing Laboratory (IPL); EspañaFil: Delegido, Jesús. Universidad de Valencia. Image Processing Laboratory (IPL); Españ

Mapping of multitemporal rice (Oryza sativa L.) growth stages using remote sensing with multi-sensor and machine learning : a thesis dissertation presented in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Earth Science at Massey University, Manawatū, New Zealand

Figure 2.1 is adapted and re-used under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.Rice (Oryza Sativa) plays a pivotal role in food security for Asian countries, especially in Indonesia. Due to the increasing pressure of environmental changes, such as land use and climate, rice cultivation areas need to be monitored regularly and spatially to ensure sustainable rice production. Moreover, timely information of rice growth stages (RGS) can lead to more efficient of inputs distribution from water, seed, fertilizer, and pesticide. One of the efficient solutions for regularly mapping the rice crop is using Earth observation satellites. Moreover, the increasing availability of open access satellite images such as Landsat-8, Sentinel-1, and Sentinel-2 provides ample opportunities to map continuous and high-resolution rice growth stages with greater accuracy. The majority of the literature has focused on mapping rice area, cropping patterns and relied mainly on the phenology of vegetation. However, the mapping process of RGS was difficult to assess the accuracy, time-consuming, and depended on only one sensor. In this work, we discuss the use of machine learning algorithms (MLA) for mapping paddy RGS with multiple remote sensing data in near-real-time. The study area was Java Island, which is the primary rice producer in Indonesia. This study has investigated: (1) the mapping of RGS using Landsat-8 imagery and different MLAs, and their rigorous performance was evaluated by conducting a multitemporal analysis; (2) the temporal consistency of predicting RGS using Sentinel-2, MOD13Q1, and Sentinel-1 data; (3) evaluating the correlation of local statistics data and paddy RGS using Sentinel-2, PROBA-V, and Sentinel-1 with MLAs. The ground truth datasets were collected from multi-year web camera data (2014-2016) and three months of the field campaign in different regions of Java (2018). The study considered the RGS in the analysis to be vegetative, reproductive, ripening, bare land, and flooding, and MLAs such as support vector machines (SVMs), random forest (RF), and artificial neural network (ANN) were used. The temporal consistency matrix was used to compare the classification maps within three sensor datasets (Landsat-8 OLI, Sentinel-2, and Sentinel-2, MOD13Q1, Sentinel-1) and in four periods (5, 10, 15, 16 days). Moreover, the result of the RGS map was also compared with monthly data from local statistics within each sub-district using cross-correlation analysis. The result from the analysis shows that SVM with a radial base function outperformed the RF and ANN and proved to be a robust method for small-size datasets (< 1,000 points). Compared to Sentinel-2, Landsat-8 OLI gives less accuracy due to the lack of a red-edge band and larger pixel size (30 x 30 m). Integration of Sentinel-2, MOD13Q1, and Sentinel-1 improved the classification performance and increased the temporal availability of cloud-free maps. The integration of PROBA-V and Sentinel-1 improved the classification accuracy from the Landsat-8 result, consistent with the monthly rice planting area statistics at the sub-district level. The western area of Java has the highest accuracy and consistency since the cropping pattern only relied on rice cultivation. In contrast, less accuracy was noticed in the eastern area because of upland rice cultivation due to limited irrigation facilities and mixed cropping. In addition, the cultivation of shallots to the north of Nganjuk Regency interferes with the model predictions because the cultivation of shallots resembles the vegetative phase due to the water banks. One future research idea is the auto-detection of the cropping index in the complex landscape to be able to use it for mapping RGS on a global scale. Detection of the rice area and RGS using Google Earth Engine (GEE) can be an action plan to disseminate the information quickly on a planetary scale. Our results show that the multitemporal Sentinel-1 combined with RF can detect rice areas with high accuracy (>91%). Similarly, accurate RGS maps can be detected by integrating multiple remote sensing (Sentinel-2, Landsat-8 OLI, and MOD13Q1) data with acceptable accuracy (76.4%), with high temporal frequency and lower cloud interference (every 16 days). Overall, this study shows that remote sensing combined with the machine learning methodology can deliver information on RGS in a timely fashion, which is easy to scale up and consistent both in time and space and matches the local statistics. This thesis is also in line with the existing rice monitoring projects such as Crop Monitor, Crop Watch, AMIS, and Sen4Agri to support disseminating information over a large area. To sum up, the proposed workflow and detailed map provide a more accurate method and information in near real-time for stakeholders, such as governmental agencies against the existing mapping method. This method can be introduced to provide accurate information to rice farmers promptly with sufficient inputs such as irrigation, seeds, and fertilisers for ensuring national food security from the shifting planting time due to climate change