Normal forms for Answer Sets Programming

Normal forms for logic programs under stable/answer set semantics are introduced. We argue that these forms can simplify the study of program properties, mainly consistency. The first normal form, called the {\em kernel} of the program, is useful for studying existence and number of answer sets. A kernel program is composed of the atoms which are undefined in the Well-founded semantics, which are those that directly affect the existence of answer sets. The body of rules is composed of negative literals only. Thus, the kernel form tends to be significantly more compact than other formulations. Also, it is possible to check consistency of kernel programs in terms of colorings of the Extended Dependency Graph program representation which we previously developed. The second normal form is called {\em 3-kernel.} A 3-kernel program is composed of the atoms which are undefined in the Well-founded semantics. Rules in 3-kernel programs have at most two conditions, and each rule either belongs to a cycle, or defines a connection between cycles. 3-kernel programs may have positive conditions. The 3-kernel normal form is very useful for the static analysis of program consistency, i.e., the syntactic characterization of existence of answer sets. This result can be obtained thanks to a novel graph-like representation of programs, called Cycle Graph which presented in the companion article \cite{Cos04b}.Comment: 15 pages, To appear in Theory and Practice of Logic Programming (TPLP

Network inference using asynchronously updated kinetic Ising Model

Network structures are reconstructed from dynamical data by respectively naive mean field (nMF) and Thouless-Anderson-Palmer (TAP) approximations. For TAP approximation, we use two methods to reconstruct the network: a) iteration method; b) casting the inference formula to a set of cubic equations and solving it directly. We investigate inference of the asymmetric Sherrington- Kirkpatrick (S-K) model using asynchronous update. The solutions of the sets cubic equation depend of temperature T in the S-K model, and a critical temperature Tc is found around 2.1. For T < Tc, the solutions of the cubic equation sets are composed of 1 real root and two conjugate complex roots while for T > Tc there are three real roots. The iteration method is convergent only if the cubic equations have three real solutions. The two methods give same results when the iteration method is convergent. Compared to nMF, TAP is somewhat better at low temperatures, but approaches the same performance as temperature increase. Both methods behave better for longer data length, but for improvement arises, TAP is well pronounced.Comment: 6 pages, 4 figure

Multidimensional Binary Vector Assignment problem: standard, structural and above guarantee parameterizations

In this article we focus on the parameterized complexity of the Multidimensional Binary Vector Assignment problem (called \BVA). An input of this problem is defined by $m$ disjoint sets $V^1, V^2, \dots, V^m$, each composed of $n$ binary vectors of size $p$. An output is a set of $n$ disjoint $m$-tuples of vectors, where each $m$-tuple is obtained by picking one vector from each set $V^i$. To each $m$-tuple we associate a $p$ dimensional vector by applying the bit-wise AND operation on the $m$ vectors of the tuple. The objective is to minimize the total number of zeros in these $n$ vectors. mBVA can be seen as a variant of multidimensional matching where hyperedges are implicitly locally encoded via labels attached to vertices, but was originally introduced in the context of integrated circuit manufacturing. We provide for this problem FPT algorithms and negative results ($ETH$-based results, $W$[2]-hardness and a kernel lower bound) according to several parameters: the standard parameter $k$ i.e. the total number of zeros), as well as two parameters above some guaranteed values.Comment: 16 pages, 6 figure