SOS rule formats for convex and abstract probabilistic bisimulations

Probabilistic transition system specifications (PTSSs) in the $nt \mu f\theta / nt\mu x\theta$ format provide structural operational semantics for Segala-type systems that exhibit both probabilistic and nondeterministic behavior and guarantee that bisimilarity is a congruence for all operator defined in such format. Starting from the $nt \mu f\theta / nt\mu x\theta$ format, we obtain restricted formats that guarantee that three coarser bisimulation equivalences are congruences. We focus on (i) Segala's variant of bisimulation that considers combined transitions, which we call here "convex bisimulation"; (ii) the bisimulation equivalence resulting from considering Park & Milner's bisimulation on the usual stripped probabilistic transition system (translated into a labelled transition system), which we call here "probability obliterated bisimulation"; and (iii) a "probability abstracted bisimulation", which, like bisimulation, preserves the structure of the distributions but instead, it ignores the probability values. In addition, we compare these bisimulation equivalences and provide a logic characterization for each of them.Comment: In Proceedings EXPRESS/SOS 2015, arXiv:1508.0634

An Abstraction Theory for Qualitative Models of Biological Systems

Multi-valued network models are an important qualitative modelling approach used widely by the biological community. In this paper we consider developing an abstraction theory for multi-valued network models that allows the state space of a model to be reduced while preserving key properties of the model. This is important as it aids the analysis and comparison of multi-valued networks and in particular, helps address the well-known problem of state space explosion associated with such analysis. We also consider developing techniques for efficiently identifying abstractions and so provide a basis for the automation of this task. We illustrate the theory and techniques developed by investigating the identification of abstractions for two published MVN models of the lysis-lysogeny switch in the bacteriophage lambda.Comment: In Proceedings MeCBIC 2010, arXiv:1011.005

Pushdown Control-Flow Analysis of Higher-Order Programs

Context-free approaches to static analysis gain precision over classical approaches by perfectly matching returns to call sites---a property that eliminates spurious interprocedural paths. Vardoulakis and Shivers's recent formulation of CFA2 showed that it is possible (if expensive) to apply context-free methods to higher-order languages and gain the same boost in precision achieved over first-order programs. To this young body of work on context-free analysis of higher-order programs, we contribute a pushdown control-flow analysis framework, which we derive as an abstract interpretation of a CESK machine with an unbounded stack. One instantiation of this framework marks the first polyvariant pushdown analysis of higher-order programs; another marks the first polynomial-time analysis. In the end, we arrive at a framework for control-flow analysis that can efficiently compute pushdown generalizations of classical control-flow analyses.Comment: The 2010 Workshop on Scheme and Functional Programmin

Syntactic Abstraction of B Models to Generate Tests

In a model-based testing approach as well as for the verification of properties, B models provide an interesting solution. However, for industrial applications, the size of their state space often makes them hard to handle. To reduce the amount of states, an abstraction function can be used, often combining state variable elimination and domain abstractions of the remaining variables. This paper complements previous results, based on domain abstraction for test generation, by adding a preliminary syntactic abstraction phase, based on variable elimination. We define a syntactic transformation that suppresses some variables from a B event model, in addition to a method that chooses relevant variables according to a test purpose. We propose two methods to compute an abstraction A of an initial model M. The first one computes A as a simulation of M, and the second one computes A as a bisimulation of M. The abstraction process produces a finite state system. We apply this abstraction computation to a Model Based Testing process.Comment: Tests and Proofs 2010, Malaga : Spain (2010

Synthesis equivalence of triples

This working paper describes a framework for compositional supervisor synthesis, which is applicable to all discrete event systems modelled as a set of deterministic automata. Compositional synthesis exploits the modular structure of the input model, and therefore works best for models consisting of a large number of small automata. State-space explosion is mitigated by the use of abstraction to simplify individual components, and the property of synthesis equivalence guarantees that the final synthesis result is the same as it would have been for the non-abstracted model. The working paper describes synthesis equivalent abstractions and shows their use in an algorithm to compute supervisors efficiently. The algorithm has been implemented in the DES software tool Supremica and successfully computes modular supervisors, even for systems with more than 1014 reachable states, in less than 30 seconds

Abstracting Asynchronous Multi-Valued Networks: An Initial Investigation

Multi-valued networks provide a simple yet expressive qualitative state based modelling approach for biological systems. In this paper we develop an abstraction theory for asynchronous multi-valued network models that allows the state space of a model to be reduced while preserving key properties of the model. The abstraction theory therefore provides a mechanism for coping with the state space explosion problem and supports the analysis and comparison of multi-valued networks. We take as our starting point the abstraction theory for synchronous multi-valued networks which is based on the finite set of traces that represent the behaviour of such a model. The problem with extending this approach to the asynchronous case is that we can now have an infinite set of traces associated with a model making a simple trace inclusion test infeasible. To address this we develop a decision procedure for checking asynchronous abstractions based on using the finite state graph of an asynchronous multi-valued network to reason about its trace semantics. We illustrate the abstraction techniques developed by considering a detailed case study based on a multi-valued network model of the regulation of tryptophan biosynthesis in Escherichia coli.Comment: Presented at MeCBIC 201