394 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Learning with Limited Annotations: A Survey on Deep Semi-Supervised Learning for Medical Image Segmentation
Medical image segmentation is a fundamental and critical step in many
image-guided clinical approaches. Recent success of deep learning-based
segmentation methods usually relies on a large amount of labeled data, which is
particularly difficult and costly to obtain especially in the medical imaging
domain where only experts can provide reliable and accurate annotations.
Semi-supervised learning has emerged as an appealing strategy and been widely
applied to medical image segmentation tasks to train deep models with limited
annotations. In this paper, we present a comprehensive review of recently
proposed semi-supervised learning methods for medical image segmentation and
summarized both the technical novelties and empirical results. Furthermore, we
analyze and discuss the limitations and several unsolved problems of existing
approaches. We hope this review could inspire the research community to explore
solutions for this challenge and further promote the developments in medical
image segmentation field
3D Deep Learning on Medical Images: A Review
The rapid advancements in machine learning, graphics processing technologies
and availability of medical imaging data has led to a rapid increase in use of
deep learning models in the medical domain. This was exacerbated by the rapid
advancements in convolutional neural network (CNN) based architectures, which
were adopted by the medical imaging community to assist clinicians in disease
diagnosis. Since the grand success of AlexNet in 2012, CNNs have been
increasingly used in medical image analysis to improve the efficiency of human
clinicians. In recent years, three-dimensional (3D) CNNs have been employed for
analysis of medical images. In this paper, we trace the history of how the 3D
CNN was developed from its machine learning roots, give a brief mathematical
description of 3D CNN and the preprocessing steps required for medical images
before feeding them to 3D CNNs. We review the significant research in the field
of 3D medical imaging analysis using 3D CNNs (and its variants) in different
medical areas such as classification, segmentation, detection, and
localization. We conclude by discussing the challenges associated with the use
of 3D CNNs in the medical imaging domain (and the use of deep learning models,
in general) and possible future trends in the field.Comment: 13 pages, 4 figures, 2 table
Going Deep in Medical Image Analysis: Concepts, Methods, Challenges and Future Directions
Medical Image Analysis is currently experiencing a paradigm shift due to Deep
Learning. This technology has recently attracted so much interest of the
Medical Imaging community that it led to a specialized conference in `Medical
Imaging with Deep Learning' in the year 2018. This article surveys the recent
developments in this direction, and provides a critical review of the related
major aspects. We organize the reviewed literature according to the underlying
Pattern Recognition tasks, and further sub-categorize it following a taxonomy
based on human anatomy. This article does not assume prior knowledge of Deep
Learning and makes a significant contribution in explaining the core Deep
Learning concepts to the non-experts in the Medical community. Unique to this
study is the Computer Vision/Machine Learning perspective taken on the advances
of Deep Learning in Medical Imaging. This enables us to single out `lack of
appropriately annotated large-scale datasets' as the core challenge (among
other challenges) in this research direction. We draw on the insights from the
sister research fields of Computer Vision, Pattern Recognition and Machine
Learning etc.; where the techniques of dealing with such challenges have
already matured, to provide promising directions for the Medical Imaging
community to fully harness Deep Learning in the future
Deep learning in medical imaging and radiation therapy
Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/146980/1/mp13264_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/146980/2/mp13264.pd
Deep learning for fast and robust medical image reconstruction and analysis
Medical imaging is an indispensable component of modern medical research as well as clinical practice. Nevertheless, imaging techniques such as magnetic resonance imaging (MRI) and computational tomography (CT) are costly and are less accessible to the majority of the world. To make medical devices more accessible, affordable and efficient, it is crucial to re-calibrate our current imaging paradigm for smarter imaging. In particular, as medical imaging techniques have highly structured forms in the way they acquire data, they provide us with an opportunity to optimise the imaging techniques holistically by leveraging data. The central theme of this thesis is to explore different opportunities where we can exploit data and deep learning to improve the way we extract information for better, faster and smarter imaging.
This thesis explores three distinct problems. The first problem is the time-consuming nature of dynamic MR data acquisition and reconstruction. We propose deep learning methods for accelerated dynamic MR image reconstruction, resulting in up to 10-fold reduction in imaging time. The second problem is the redundancy in our current imaging pipeline. Traditionally, imaging pipeline treated acquisition, reconstruction and analysis as separate steps. However, we argue that one can approach them holistically and optimise the entire pipeline jointly for a specific target goal. To this end, we propose deep learning approaches for obtaining high fidelity cardiac MR segmentation directly from significantly undersampled data, greatly exceeding the undersampling limit for image reconstruction. The final part of this thesis tackles the problem of interpretability of the deep learning algorithms. We propose attention-models that can implicitly focus on salient regions in an image to improve accuracy for ultrasound scan plane detection and CT segmentation. More crucially, these models can provide explainability, which is a crucial stepping stone for the harmonisation of smart imaging and current clinical practice.Open Acces
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