GiViP: A Visual Profiler for Distributed Graph Processing Systems

Analyzing large-scale graphs provides valuable insights in different application scenarios. While many graph processing systems working on top of distributed infrastructures have been proposed to deal with big graphs, the tasks of profiling and debugging their massive computations remain time consuming and error-prone. This paper presents GiViP, a visual profiler for distributed graph processing systems based on a Pregel-like computation model. GiViP captures the huge amount of messages exchanged throughout a computation and provides an interactive user interface for the visual analysis of the collected data. We show how to take advantage of GiViP to detect anomalies related to the computation and to the infrastructure, such as slow computing units and anomalous message patterns.Comment: Appears in the Proceedings of the 25th International Symposium on Graph Drawing and Network Visualization (GD 2017

Visualizing Gene Clusters using Neighborhood Graphs in R

The visualization of cluster solutions in gene expression data analysis gives practitioners an understanding of the cluster structure of their data and makes it easier to interpret the cluster results. Neighborhood graphs allow for visual assessment of relationships between adjacent clusters. The number of clusters in gene expression data is for biological reasons rather large. As a linear projection of the data into 2 dimensions does not scale well in the number of clusters there is a need for new visualization techniques using non-linear arrangement of the clusters. The new visualization tool is implemented in the open source statistical computing environment R. It is demonstrated on microarray data from yeast

Multiscale Snapshots: Visual Analysis of Temporal Summaries in Dynamic Graphs

The overview-driven visual analysis of large-scale dynamic graphs poses a major challenge. We propose Multiscale Snapshots, a visual analytics approach to analyze temporal summaries of dynamic graphs at multiple temporal scales. First, we recursively generate temporal summaries to abstract overlapping sequences of graphs into compact snapshots. Second, we apply graph embeddings to the snapshots to learn low-dimensional representations of each sequence of graphs to speed up specific analytical tasks (e.g., similarity search). Third, we visualize the evolving data from a coarse to fine-granular snapshots to semi-automatically analyze temporal states, trends, and outliers. The approach enables to discover similar temporal summaries (e.g., recurring states), reduces the temporal data to speed up automatic analysis, and to explore both structural and temporal properties of a dynamic graph. We demonstrate the usefulness of our approach by a quantitative evaluation and the application to a real-world dataset.Comment: IEEE Transactions on Visualization and Computer Graphics (TVCG), to appea

Structured graphs : a visual formalism for scalable graph based tools & its application to software structured analysis

University of Technology, Sydney. School of Computing Sciences.Very large graphs are difficult for a person to browse and edit on a computer screen. This thesis introduces a visual formalism, structured graphs, which supports the scalable browsing and editing of very large graphs. This approach is relevant to a given application when it incorporates a large graph which is composed of named nodes and links, and abstraction hierarchies which can be defined on these nodes and links. A typical browsing operation is the selection of an arbitrary group of nodes and the display of the network of nodes and links for these nodes. Typical editing operations is: adding a new link between two nodes, adding a new node in the hierarchy, and moving sub-graphs to a new position in the node hierarchy. These operations are scalable when the number of user steps involved remains constant regardless of how large the graph is. This thesis shows that with structured graphs, these operations typically take one user step. We demonstrate the utility of structured graph formalism in an application setting. Computer aided software engineering tools, and in particular, structured analysis tools, are the chosen application area for this thesis, as they are graph based, and existing tools, though adequate for medium sized systems, lack scalability. In this thesis examples of an improved design for a structured analysis tool, based on structured graphs, is given. These improvements include scalable browsing and editing operations to support an individual software analyst, and component composition operations to support the construction of large models by a group of software analysts. Finally, we include proofs of key properties and descriptions of two text based implementations

Node re-ordering as a means of anomaly detection in time-evolving graphs

© Springer International Publishing AG 2016. Anomaly detection is a vital task for maintaining and improving any dynamic system. In this paper, we address the problem of anomaly detection in time-evolving graphs, where graphs are a natural representation for data in many types of applications. A key challenge in this context is how to process large volumes of streaming graphs. We propose a pre-processing step before running any further analysis on the data, where we permute the rows and columns of the adjacency matrix. This pre-processing step expedites graph mining techniques such as anomaly detection, PageRank, or graph coloring. In this paper, we focus on detecting anomalies in a sequence of graphs based on rank correlations of the reordered nodes. The merits of our approach lie in its simplicity and resilience to challenges such as unsupervised input, large volumes and high velocities of data. We evaluate the scalability and accuracy of our method on real graphs, where our method facilitates graph processing while producing more deterministic orderings. We show that the proposed approach is capable of revealing anomalies in a more efficient manner based on node rankings. Furthermore, our method can produce visual representations of graphs that are useful for graph compression

On the Algebraic Properties of Flame Graphs

Flame graphs are a popular way of representing profiling data. In this paper we propose a possible mathematical definition of flame graphs. In doing so, we gain some interesting algebraic properties almost for free, which in turn allow us to define some operations that can allow to perform an in-depth performance regression analysis. The typical documented use of a flame graph is via its graphical representation, whereby one scans the picture for the largest plateaux. Whilst this method is effective at finding the main sources of performance issues, it leaves quite a large amount of data potentially unused. By combining a mathematical precise definition of flame graphs with some statistical methods we show how to generalise this visual procedure and make the best of the full set of collected profiling data.Comment: 11 pages, 4 figure

Visualization of state transition graphs

State transition graphs are important in computer science and engineering where they are used to analyze the behavior of computer-based systems. In such a graph nodes represent states a system can be in. Links, or directed edges, represent transitions between states. Research in visualization investigates the application of interactive computer graphics to understand large and complex data sets. Large state transition graphs fall into this category. They often contain tens of thousands of nodes, or more, and tens to hundreds of thousands of edges. Also, they describe system behavior at a low abstraction level. This hinders analysis and insight. This dissertation presents a number of techniques for the interactive visualization of state transition graphs. Much of the work takes advantage of multivariate data associated with nodes and edges. Using an experimental approach, several new methods were developed in close collaboration with a number of users. The following approaches were pursued: • Selection and projection. This technique provides the user with visual support to select a subset of node attributes. Consequently, the state transition graph is projected to 2D and visualized in a second, correlated visualization. • Attribute-based clustering. By specifying subsets of node attributes and clustering based on these, the user generates simplified abstractions of a state transition graph. Clustering generates hierarchical, relational, and metric data, which are represented in a single visualization. • User-defined diagrams. With this technique the user investigates state transition graphs with custom diagrams. Diagrams are parameterized by linking their graphical properties to the data. Diagrams are integrated in a number of correlated visualizations. • Multiple views on traces. System traces are linear paths in state transition graphs. This technique provides the user with different perspectives on traces. • Querying nodes and edges. Direct manipulation enables the user to interactively inspect and query state transition graphs. In this way relations and patterns can be investigated based on data associated with nodes and edges. This dissertation shows that interactive visualization can play a role during the analysis of state transition graphs. The ability to interrogate visual representations of such graphs allows users to enhance their knowledge of the modeled systems. It is shown how the above techniques enable users to answer questions about their data. A number of case studies, developed in collaboration with system analysts, are presented. Finally, solutions to challenges encountered during the development of the visualization techniques are discussed. Insights generic to the field of visualization are considered and directions for future work are recommended