39 research outputs found
On the Reconstruction of Geodesic Subspaces of
We consider the topological and geometric reconstruction of a geodesic
subspace of both from the \v{C}ech and Vietoris-Rips filtrations
on a finite, Hausdorff-close, Euclidean sample. Our reconstruction technique
leverages the intrinsic length metric induced by the geodesics on the subspace.
We consider the distortion and convexity radius as our sampling parameters for
a successful reconstruction. For a geodesic subspace with finite distortion and
positive convexity radius, we guarantee a correct computation of its homotopy
and homology groups from the sample. For geodesic subspaces of ,
we also devise an algorithm to output a homotopy equivalent geometric complex
that has a very small Hausdorff distance to the unknown shape of interest
Persistence stability for geometric complexes
In this paper we study the properties of the homology of different geometric
filtered complexes (such as Vietoris-Rips, Cech and witness complexes) built on
top of precompact spaces. Using recent developments in the theory of
topological persistence we provide simple and natural proofs of the stability
of the persistent homology of such complexes with respect to the
Gromov--Hausdorff distance. We also exhibit a few noteworthy properties of the
homology of the Rips and Cech complexes built on top of compact spaces.Comment: We include a discussion of ambient Cech complexes and a new class of
examples called Dowker complexe
Dimension Detection with Local Homology
Detecting the dimension of a hidden manifold from a point sample has become
an important problem in the current data-driven era. Indeed, estimating the
shape dimension is often the first step in studying the processes or phenomena
associated to the data. Among the many dimension detection algorithms proposed
in various fields, a few can provide theoretical guarantee on the correctness
of the estimated dimension. However, the correctness usually requires certain
regularity of the input: the input points are either uniformly randomly sampled
in a statistical setting, or they form the so-called
-sample which can be neither too dense nor too sparse.
Here, we propose a purely topological technique to detect dimensions. Our
algorithm is provably correct and works under a more relaxed sampling
condition: we do not require uniformity, and we also allow Hausdorff noise. Our
approach detects dimension by determining local homology. The computation of
this topological structure is much less sensitive to the local distribution of
points, which leads to the relaxation of the sampling conditions. Furthermore,
by leveraging various developments in computational topology, we show that this
local homology at a point can be computed \emph{exactly} for manifolds
using Vietoris-Rips complexes whose vertices are confined within a local
neighborhood of . We implement our algorithm and demonstrate the accuracy
and robustness of our method using both synthetic and real data sets
Homotopy Reconstruction via the Cech Complex and the Vietoris-Rips Complex
We derive conditions under which the reconstruction of a target space is topologically correct via the ?ech complex or the Vietoris-Rips complex obtained from possibly noisy point cloud data. We provide two novel theoretical results. First, we describe sufficient conditions under which any non-empty intersection of finitely many Euclidean balls intersected with a positive reach set is contractible, so that the Nerve theorem applies for the restricted ?ech complex. Second, we demonstrate the homotopy equivalence of a positive ?-reach set and its offsets. Applying these results to the restricted ?ech complex and using the interleaving relations with the ?ech complex (or the Vietoris-Rips complex), we formulate conditions guaranteeing that the target space is homotopy equivalent to the ?ech complex (or the Vietoris-Rips complex), in terms of the ?-reach. Our results sharpen existing results
Persistence Bag-of-Words for Topological Data Analysis
Persistent homology (PH) is a rigorous mathematical theory that provides a
robust descriptor of data in the form of persistence diagrams (PDs). PDs
exhibit, however, complex structure and are difficult to integrate in today's
machine learning workflows. This paper introduces persistence bag-of-words: a
novel and stable vectorized representation of PDs that enables the seamless
integration with machine learning. Comprehensive experiments show that the new
representation achieves state-of-the-art performance and beyond in much less
time than alternative approaches.Comment: Accepted for the Twenty-Eight International Joint Conference on
Artificial Intelligence (IJCAI-19). arXiv admin note: substantial text
overlap with arXiv:1802.0485
High-Dimensional Topological Data Analysis
International audienceModern data often come as point clouds embedded in high dimensional Euclidean spaces, or possibly more general metric spaces. They are usually not distributed uniformly, but lie around some highly nonlinear geometric structures with nontrivial topology. Topological data analysis (TDA) is an emerging field whose goal is to provide mathematical and algorithmic tools to understand the topological and geometric structure of data. This chapter provides a short introduction to this new field through a few selected topics. The focus is deliberately put on the mathematical foundations rather than specific applications, with a particular attention to stability results asserting the relevance of the topological information inferred from data
Computational Topology Techniques for Characterizing Time-Series Data
Topological data analysis (TDA), while abstract, allows a characterization of
time-series data obtained from nonlinear and complex dynamical systems. Though
it is surprising that such an abstract measure of structure - counting pieces
and holes - could be useful for real-world data, TDA lets us compare different
systems, and even do membership testing or change-point detection. However, TDA
is computationally expensive and involves a number of free parameters. This
complexity can be obviated by coarse-graining, using a construct called the
witness complex. The parametric dependence gives rise to the concept of
persistent homology: how shape changes with scale. Its results allow us to
distinguish time-series data from different systems - e.g., the same note
played on different musical instruments.Comment: 12 pages, 6 Figures, 1 Table, The Sixteenth International Symposium
on Intelligent Data Analysis (IDA 2017