A Survey on Deep Learning in Medical Image Analysis

Deep learning algorithms, in particular convolutional networks, have rapidly become a methodology of choice for analyzing medical images. This paper reviews the major deep learning concepts pertinent to medical image analysis and summarizes over 300 contributions to the field, most of which appeared in the last year. We survey the use of deep learning for image classification, object detection, segmentation, registration, and other tasks and provide concise overviews of studies per application area. Open challenges and directions for future research are discussed.Comment: Revised survey includes expanded discussion section and reworked introductory section on common deep architectures. Added missed papers from before Feb 1st 201

Generative Models for Novelty Detection Applications in abnormal event and situational changedetection from data series

Novelty detection is a process for distinguishing the observations that differ in some respect from the observations that the model is trained on. Novelty detection is one of the fundamental requirements of a good classification or identification system since sometimes the test data contains observations that were not known at the training time. In other words, the novelty class is often is not presented during the training phase or not well defined. In light of the above, one-class classifiers and generative methods can efficiently model such problems. However, due to the unavailability of data from the novelty class, training an end-to-end model is a challenging task itself. Therefore, detecting the Novel classes in unsupervised and semi-supervised settings is a crucial step in such tasks. In this thesis, we propose several methods to model the novelty detection problem in unsupervised and semi-supervised fashion. The proposed frameworks applied to different related applications of anomaly and outlier detection tasks. The results show the superior of our proposed methods in compare to the baselines and state-of-the-art methods

Innovating with Artificial Intelligence: Capturing the Constructive Functional Capabilities of Deep Generative Learning

As an emerging species of artificial intelligence, deep generative learning models can generate an unprecedented variety of new outputs. Examples include the creation of music, text-to-image translation, or the imputation of missing data. Similar to other AI models that already evoke significant changes in society and economy, there is a need for structuring the constructive functional capabilities of DGL. To derive and discuss them, we conducted an extensive and structured literature review. Our results reveal a substantial scope of six constructive functional capabilities demonstrating that DGL is not exclusively used to generate unseen outputs. Our paper further guides companies in capturing and evaluating DGL’s potential for innovation. Besides, our paper fosters an understanding of DGL and provides a conceptual basis for further research

Feature Learning for RGB-D Data

RGB-D data has turned out to be a very useful representation for solving fundamental computer vision problems. It takes the advantages of the color images that provide appearance information of an object and also the depth image that is immune to the variations in color, illumination, rotation angle and scale. With the invention of the low-cost Microsoft Kinect sensor, which was initially used for gaming and later became a popular device for computer vision, high quality RGB-D data can be acquired easily. RGB-D image/video can facilitate a wide range of application areas, such as computer vision, robotics, construction and medical imaging. Furthermore, how to fuse RGB information and depth information is still a problem in computer vision. It is not enough to simply concatenate RGB data and depth data together. A new fusion method could better fuse RGB images and depth images. It still needs more powerful algorithms on this. In this thesis, to explore more advantages of RGB-D data, we use some popular RGB-D datasets for deep feature learning algorithms evaluation, hyper-parameter optimization, local multi-modal feature learning, RGB-D data fusion and recognizing RGB information from RGB-D images: i)With the success of Deep Neural Network in computer vision, deep features from fused RGB-D data can be proved to gain better results than RGB data only. However, different deep learning algorithms show different performance on different RGB-D datasets. Through large-scale experiments to comprehensively evaluate the performance of deep feature learning models for RGB-D image/ video classification, we obtain the conclusion that RGB-D fusion methods using CNNs always outperform other selected methods (DBNs, SDAE and LSTM). On the other side, since LSTM can learn from experience to classify, process and predict time series, it achieved better performances than DBN and SDAE in video classification tasks. ii) Hyper-parameter optimization can help researchers quickly choose an initial set of hyper-parameters for a new coming classification task, thus reducing the number of trials in terms of hyper-parameter space. We present a simple and efficient framework for improving the efficiency and accuracy of hyper-parameter optimization by considering the classification complexity of a particular dataset. We verify this framework on three real-world RGB-D datasets. After the analysis of experiments, we confirm that our framework can provide deeper insights into the relationship between dataset classification tasks and hyperparameters optimization, thus quickly choosing an accurate initial set of hyper-parameters for a new coming classification task. iii) We propose a new Convolutional Neural Networks (CNNs)-based local multi-modal feature learning framework for RGB-D scene classification. This method can effectively capture much of the local structure from the RGB-D scene images and automatically learn a fusion strategy for the object-level recognition step instead of simply training a classifier on top of features extracted from both modalities. Experiments are conducted on two popular datasets to thoroughly test the performance of our method, which show that our method with local multi-modal CNNs greatly outperforms state-of-the-art approaches. Our method has the potential to improve RGB-D scene understanding. Some extended evaluation shows that CNNs trained using a scene-centric dataset is able to achieve an improvement on scene benchmarks compared to a network trained using an object-centric dataset. iv) We propose a novel method for RGB-D data fusion. We project raw RGB-D data into a complex space and then jointly extract features from the fused RGB-D images. Besides three observations about the fusion methods, the experimental results also show that our method achieves competing performance against the classical SIFT. v) We propose a novel method called adaptive Visual-Depth Embedding (aVDE) which learns the compact shared latent space between two representations of labeled RGB and depth modalities in the source domain first. Then the shared latent space can help the transfer of the depth information to the unlabeled target dataset. At last, aVDE matches features and reweights instances jointly across the shared latent space and the projected target domain for an adaptive classifier. This method can utilize the additional depth information in the source domain and simultaneously reduce the domain mismatch between the source and target domains. On two real-world image datasets, the experimental results illustrate that the proposed method significantly outperforms the state-of-the-art methods

Identification, synchronisation and composition of user-generated videos

Cotutela Universitat Politècnica de Catalunya i Queen Mary University of LondonThe increasing availability of smartphones is facilitating people to capture videos of their experience when attending events such as concerts, sports competitions and public rallies. Smartphones are equipped with inertial sensors which could be beneficial for event understanding. The captured User-Generated Videos (UGVs) are made available on media sharing websites. Searching and mining of UGVs of the same event are challenging due to inconsistent tags or incorrect timestamps. A UGV recorded from a fixed location contains monotonic content and unintentional camera motions, which may make it less interesting to playback. In this thesis, we propose the following identification, synchronisation and video composition frameworks for UGVs. We propose a framework for the automatic identification and synchronisation of unedited multi-camera UGVs within a database. The proposed framework analyses the sound to match and cluster UGVs that capture the same spatio-temporal event, and estimate their relative time-shift to temporally align them. We design a novel descriptor derived from the pairwise matching of audio chroma features of UGVs. The descriptor facilitates the definition of a classification threshold for automatic query-by-example event identification. We contribute a database of 263 multi-camera UGVs of 48 real-world events. We evaluate the proposed framework on this database and compare it with state-of-the-art methods. Experimental results show the effectiveness of the proposed approach in the presence of audio degradations (channel noise, ambient noise, reverberations). Moreover, we present an automatic audio and visual-based camera selection framework for composing uninterrupted recording from synchronised multi-camera UGVs of the same event. We design an automatic audio-based cut-point selection method that provides a common reference for audio and video segmentation. To filter low quality video segments, spatial and spatio-temporal assessments are computed. The framework combines segments of UGVs using a rank-based camera selection strategy by considering visual quality scores and view diversity. The proposed framework is validated on a dataset of 13 events (93~UGVs) through subjective tests and compared with state-of-the-art methods. Suitable cut-point selection, specific visual quality assessments and rank-based camera selection contribute to the superiority of the proposed framework over the existing methods. Finally, we contribute a method for Camera Motion Detection using Gyroscope for UGVs captured from smartphones and design a gyro-based quality score for video composition. The gyroscope measures the angular velocity of the smartphone that can be use for camera motion analysis. We evaluate the proposed camera motion detection method on a dataset of 24 multi-modal UGVs captured by us, and compare it with existing visual and inertial sensor-based methods. By designing a gyro-based score to quantify the goodness of the multi-camera UGVs, we develop a gyro-based video composition framework. A gyro-based score substitutes the spatial and spatio-temporal scores and reduces the computational complexity. We contribute a multi-modal dataset of 3 events (12~UGVs), which is used to validate the proposed gyro-based video composition framework.El incremento de la disponibilidad de teléfonos inteligentes o smartphones posibilita a la gente capturar videos de sus experiencias cuando asisten a eventos así como como conciertos, competiciones deportivas o mítines públicos. Los Videos Generados por Usuarios (UGVs) pueden estar disponibles en sitios web públicos especializados en compartir archivos. La búsqueda y la minería de datos de los UGVs del mismo evento son un reto debido a que los etiquetajes son incoherentes o las marcas de tiempo erróneas. Por otra parte, un UGV grabado desde una ubicación fija, contiene información monótona y movimientos de cámara no intencionados haciendo menos interesante su reproducción. En esta tesis, se propone una identificación, sincronización y composición de tramas de vídeo para UGVs. Se ha propuesto un sistema para la identificación y sincronización automática de UGVs no editados provenientes de diferentes cámaras dentro de una base de datos. El sistema propuesto analiza el sonido con el fin de hacerlo coincidir e integrar UGVs que capturan el mismo evento en el espacio y en el tiempo, estimando sus respectivos desfases temporales y alinearlos en el tiempo. Se ha diseñado un nuevo descriptor a partir de la coincidencia por parejas de características de la croma del audio de los UGVs. Este descriptor facilita la determinación de una clasificación por umbral para una identificación de eventos automática basada en búsqueda mediante ejemplo (en inglés, query by example). Se ha contribuido con una base de datos de 263 multi-cámaras UGVs de un total de 48 eventos reales. Se ha evaluado la trama propuesta en esta base de datos y se ha comparado con los métodos elaborados en el estado del arte. Los resultados experimentales muestran la efectividad del enfoque propuesto con la presencia alteraciones en el audio. Además, se ha presentado una selección automática de tramas en base a la reproducción de video y audio componiendo una grabación ininterrumpida de multi-cámaras UGVs sincronizadas en el mismo evento. También se ha diseñado un método de selección de puntos de corte automático basado en audio que proporciona una referencia común para la segmentación de audio y video. Con el fin de filtrar segmentos de videos de baja calidad, se han calculado algunas medidas espaciales y espacio-temporales. El sistema combina segmentos de UGVs empleando una estrategia de selección de cámaras basadas en la evaluación a través de un ranking considerando puntuaciones de calidad visuales y diversidad de visión. El sistema propuesto se ha validado con un conjunto de datos de 13 eventos (93 UGVs) a través de pruebas subjetivas y se han comparado con los métodos elaborados en el estado del arte. La selección de puntos de corte adecuados, evaluaciones de calidad visual específicas y la selección de cámara basada en ranking contribuyen en la mejoría de calidad del sistema propuesto respecto a otros métodos existentes. Finalmente, se ha realizado un método para la Detección de Movimiento de Cámara usando giróscopos para las UGVs capturadas desde smartphones y se ha diseñado un método de puntuación de calidad basada en el giro. El método de detección de movimiento de la cámara con una base de datos de 24 UGVs multi-modales y se ha comparado con los métodos actuales basados en visión y sistemas inerciales. A través del diseño de puntuación para cuantificar con el giróscopo cuán bien funcionan los sistemas de UGVs con multi-cámara, se ha desarrollado un sistema de composición de video basada en el movimiento del giroscopio. Este sistema basado en la puntuación a través del giróscopo sustituye a los sistemas de puntuaciones basados en parámetros espacio-temporales reduciendo la complejidad computacional. Además, se ha contribuido con un conjunto de datos de 3 eventos (12 UGVs), que se han empleado para validar los sistemas de composición de video basados en giróscopo.Postprint (published version