Authentication of Moving Top-k Spatial Keyword Queries

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Automatic annotation of bioinformatics workflows with biomedical ontologies

Legacy scientific workflows, and the services within them, often present scarce and unstructured (i.e. textual) descriptions. This makes it difficult to find, share and reuse them, thus dramatically reducing their value to the community. This paper presents an approach to annotating workflows and their subcomponents with ontology terms, in an attempt to describe these artifacts in a structured way. Despite a dearth of even textual descriptions, we automatically annotated 530 myExperiment bioinformatics-related workflows, including more than 2600 workflow-associated services, with relevant ontological terms. Quantitative evaluation of the Information Content of these terms suggests that, in cases where annotation was possible at all, the annotation quality was comparable to manually curated bioinformatics resources.Comment: 6th International Symposium on Leveraging Applications (ISoLA 2014 conference), 15 pages, 4 figure

Federated Access Management for Collaborative Environments

abstract: Access control has been historically recognized as an effective technique for ensuring that computer systems preserve important security properties. Recently, attribute-based access control (ABAC) has emerged as a new paradigm to provide access mediation by leveraging the concept of attributes: observable properties that become relevant under a certain security context and are exhibited by the entities normally involved in the mediation process, namely, end-users and protected resources. Also recently, independently-run organizations from the private and public sectors have recognized the benefits of engaging in multi-disciplinary research collaborations that involve sharing sensitive proprietary resources such as scientific data, networking capabilities and computation time and have recognized ABAC as the paradigm that suits their needs for restricting the way such resources are to be shared with each other. In such a setting, a robust yet flexible access mediation scheme is crucial to guarantee participants are granted access to such resources in a safe and secure manner. However, no consensus exists either in the literature with respect to a formal model that clearly defines the way the components depicted in ABAC should interact with each other, so that the rigorous study of security properties to be effectively pursued. This dissertation proposes an approach tailored to provide a well-defined and formal definition of ABAC, including a description on how attributes exhibited by different independent organizations are to be leveraged for mediating access to shared resources, by allowing for collaborating parties to engage in federations for the specification, discovery, evaluation and communication of attributes, policies, and access mediation decisions. In addition, a software assurance framework is introduced to support the correct construction of enforcement mechanisms implementing our approach by leveraging validation and verification techniques based on software assertions, namely, design by contract (DBC) and behavioral interface specification languages (BISL). Finally, this dissertation also proposes a distributed trust framework that allows for exchanging recommendations on the perceived reputations of members of our proposed federations, in such a way that the level of trust of previously-unknown participants can be properly assessed for the purposes of access mediation.Dissertation/ThesisDoctoral Dissertation Computer Science 201

Testing web enabled simulation at scale using metamorphic testing

We report on Facebook's deployment of MIA (Metamorphic Interaction Automaton). MIA is used to test Facebook's Web Enabled Simulation, built on a web infrastructure of hundreds of millions of lines of code. MIA tackles the twin problems of test flakiness and the unknowable oracle problem. It uses metamorphic testing to automate continuous integration and regression test execution. MIA also plays the role of a test bot, automatically commenting on all relevant changes submitted for code review. It currently uses a suite of over 40 metamorphic test cases. Even at this extreme scale, a non-trivial metamorphic test suite subset yields outcomes within 20 minutes (sufficient for continuous integration and review processes). Furthermore, our offline mode simulation reduces test flakiness from approximately 50% (of all online tests) to 0% (offline). Metamorphic testing has been widely-studied for 22 years. This paper is the first reported deployment into an industrial continuous integration system

Personalized Search

As the volume of electronically available information grows, relevant items become harder to find. This work presents an approach to personalizing search results in scientific publication databases. This work focuses on re-ranking search results from existing search engines like Solr or ElasticSearch. This work also includes the development of Obelix, a new recommendation system used to re-rank search results. The project was proposed and performed at CERN, using the scientific publications available on the CERN Document Server (CDS). This work experiments with re-ranking using offline and online evaluation of users and documents in CDS. The experiments conclude that the personalized search result outperform both latest first and word similarity in terms of click position in the search result for global search in CDS