Using modular decomposition technique to solve the maximum clique problem

In this article we use the modular decomposition technique for exact solving the weighted maximum clique problem. Our algorithm takes the modular decomposition tree from the paper of Tedder et. al. and finds solution recursively. Also, we propose algorithms to construct graphs with modules. We show some interesting results, comparing our solution with Ostergard's algorithm on DIMACS benchmarks and on generated graph

Fully polynomial FPT algorithms for some classes of bounded clique-width graphs

Parameterized complexity theory has enabled a refined classification of the difficulty of NP-hard optimization problems on graphs with respect to key structural properties, and so to a better understanding of their true difficulties. More recently, hardness results for problems in P were achieved using reasonable complexity theoretic assumptions such as: Strong Exponential Time Hypothesis (SETH), 3SUM and All-Pairs Shortest-Paths (APSP). According to these assumptions, many graph theoretic problems do not admit truly subquadratic algorithms, nor even truly subcubic algorithms (Williams and Williams, FOCS 2010 and Abboud, Grandoni, Williams, SODA 2015). A central technique used to tackle the difficulty of the above mentioned problems is fixed-parameter algorithms for polynomial-time problems with polynomial dependency in the fixed parameter (P-FPT). This technique was introduced by Abboud, Williams and Wang in SODA 2016 and continued by Husfeldt (IPEC 2016) and Fomin et al. (SODA 2017), using the treewidth as a parameter. Applying this technique to clique-width, another important graph parameter, remained to be done. In this paper we study several graph theoretic problems for which hardness results exist such as cycle problems (triangle detection, triangle counting, girth, diameter), distance problems (diameter, eccentricities, Gromov hyperbolicity, betweenness centrality) and maximum matching. We provide hardness results and fully polynomial FPT algorithms, using clique-width and some of its upper-bounds as parameters (split-width, modular-width and $P\_4$-sparseness). We believe that our most important result is an ${\cal O}(k^4 \cdot n + m)$-time algorithm for computing a maximum matching where $k$ is either the modular-width or the $P\_4$-sparseness. The latter generalizes many algorithms that have been introduced so far for specific subclasses such as cographs, $P\_4$-lite graphs, $P\_4$-extendible graphs and $P\_4$-tidy graphs. Our algorithms are based on preprocessing methods using modular decomposition, split decomposition and primeval decomposition. Thus they can also be generalized to some graph classes with unbounded clique-width

Towards an Isomorphism Dichotomy for Hereditary Graph Classes

In this paper we resolve the complexity of the isomorphism problem on all but finitely many of the graph classes characterized by two forbidden induced subgraphs. To this end we develop new techniques applicable for the structural and algorithmic analysis of graphs. First, we develop a methodology to show isomorphism completeness of the isomorphism problem on graph classes by providing a general framework unifying various reduction techniques. Second, we generalize the concept of the modular decomposition to colored graphs, allowing for non-standard decompositions. We show that, given a suitable decomposition functor, the graph isomorphism problem reduces to checking isomorphism of colored prime graphs. Third, we extend the techniques of bounded color valence and hypergraph isomorphism on hypergraphs of bounded color size as follows. We say a colored graph has generalized color valence at most k if, after removing all vertices in color classes of size at most k, for each color class C every vertex has at most k neighbors in C or at most k non-neighbors in C. We show that isomorphism of graphs of bounded generalized color valence can be solved in polynomial time.Comment: 37 pages, 4 figure

Solving MaxSAT and #SAT on structured CNF formulas

In this paper we propose a structural parameter of CNF formulas and use it to identify instances of weighted MaxSAT and #SAT that can be solved in polynomial time. Given a CNF formula we say that a set of clauses is precisely satisfiable if there is some complete assignment satisfying these clauses only. Let the ps-value of the formula be the number of precisely satisfiable sets of clauses. Applying the notion of branch decompositions to CNF formulas and using ps-value as cut function, we define the ps-width of a formula. For a formula given with a decomposition of polynomial ps-width we show dynamic programming algorithms solving weighted MaxSAT and #SAT in polynomial time. Combining with results of 'Belmonte and Vatshelle, Graph classes with structured neighborhoods and algorithmic applications, Theor. Comput. Sci. 511: 54-65 (2013)' we get polynomial-time algorithms solving weighted MaxSAT and #SAT for some classes of structured CNF formulas. For example, we get $O(m^2(m + n)s)$ algorithms for formulas $F$ of $m$ clauses and $n$ variables and size $s$, if $F$ has a linear ordering of the variables and clauses such that for any variable $x$ occurring in clause $C$, if $x$ appears before $C$ then any variable between them also occurs in $C$, and if $C$ appears before $x$ then $x$ occurs also in any clause between them. Note that the class of incidence graphs of such formulas do not have bounded clique-width

Parameterized Algorithms for Modular-Width

It is known that a number of natural graph problems which are FPT parameterized by treewidth become W-hard when parameterized by clique-width. It is therefore desirable to find a different structural graph parameter which is as general as possible, covers dense graphs but does not incur such a heavy algorithmic penalty. The main contribution of this paper is to consider a parameter called modular-width, defined using the well-known notion of modular decompositions. Using a combination of ILPs and dynamic programming we manage to design FPT algorithms for Coloring and Partitioning into paths (and hence Hamiltonian path and Hamiltonian cycle), which are W-hard for both clique-width and its recently introduced restriction, shrub-depth. We thus argue that modular-width occupies a sweet spot as a graph parameter, generalizing several simpler notions on dense graphs but still evading the "price of generality" paid by clique-width.Comment: to appear in IPEC 2013. arXiv admin note: text overlap with arXiv:1304.5479 by other author

Algorithmic Aspects of Switch Cographs

This paper introduces the notion of involution module, the first generalization of the modular decomposition of 2-structure which has a unique linear-sized decomposition tree. We derive an O(n^2) decomposition algorithm and we take advantage of the involution modular decomposition tree to state several algorithmic results. Cographs are the graphs that are totally decomposable w.r.t modular decomposition. In a similar way, we introduce the class of switch cographs, the class of graphs that are totally decomposable w.r.t involution modular decomposition. This class generalizes the class of cographs and is exactly the class of (Bull, Gem, Co-Gem, C_5)-free graphs. We use our new decomposition tool to design three practical algorithms for the maximum cut, vertex cover and vertex separator problems. The complexity of these problems was still unknown for this class of graphs. This paper also improves the complexity of the maximum clique, the maximum independant set, the chromatic number and the maximum clique cover problems by giving efficient algorithms, thanks to the decomposition tree. Eventually, we show that this class of graphs has Clique-Width at most 4 and that a Clique-Width expression can be computed in linear time

Improved Optimal and Approximate Power Graph Compression for Clearer Visualisation of Dense Graphs

Drawings of highly connected (dense) graphs can be very difficult to read. Power Graph Analysis offers an alternate way to draw a graph in which sets of nodes with common neighbours are shown grouped into modules. An edge connected to the module then implies a connection to each member of the module. Thus, the entire graph may be represented with much less clutter and without loss of detail. A recent experimental study has shown that such lossless compression of dense graphs makes it easier to follow paths. However, computing optimal power graphs is difficult. In this paper, we show that computing the optimal power-graph with only one module is NP-hard and therefore likely NP-hard in the general case. We give an ILP model for power graph computation and discuss why ILP and CP techniques are poorly suited to the problem. Instead, we are able to find optimal solutions much more quickly using a custom search method. We also show how to restrict this type of search to allow only limited back-tracking to provide a heuristic that has better speed and better results than previously known heuristics.Comment: Extended technical report accompanying the PacificVis 2013 paper of the same nam

Bounded Search Tree Algorithms for Parameterized Cograph Deletion: Efficient Branching Rules by Exploiting Structures of Special Graph Classes

Many fixed-parameter tractable algorithms using a bounded search tree have been repeatedly improved, often by describing a larger number of branching rules involving an increasingly complex case analysis. We introduce a novel and general search strategy that branches on the forbidden subgraphs of a graph class relaxation. By using the class of $P_4$-sparse graphs as the relaxed graph class, we obtain efficient bounded search tree algorithms for several parameterized deletion problems. We give the first non-trivial bounded search tree algorithms for the cograph edge-deletion problem and the trivially perfect edge-deletion problems. For the cograph vertex deletion problem, a refined analysis of the runtime of our simple bounded search algorithm gives a faster exponential factor than those algorithms designed with the help of complicated case distinctions and non-trivial running time analysis [21] and computer-aided branching rules [11].Comment: 23 pages. Accepted in Discrete Mathematics, Algorithms and Applications (DMAA

Meta-Kernelization with Structural Parameters

Meta-kernelization theorems are general results that provide polynomial kernels for large classes of parameterized problems. The known meta-kernelization theorems, in particular the results of Bodlaender et al. (FOCS'09) and of Fomin et al. (FOCS'10), apply to optimization problems parameterized by solution size. We present the first meta-kernelization theorems that use a structural parameters of the input and not the solution size. Let C be a graph class. We define the C-cover number of a graph to be a the smallest number of modules the vertex set can be partitioned into, such that each module induces a subgraph that belongs to the class C. We show that each graph problem that can be expressed in Monadic Second Order (MSO) logic has a polynomial kernel with a linear number of vertices when parameterized by the C-cover number for any fixed class C of bounded rank-width (or equivalently, of bounded clique-width, or bounded Boolean width). Many graph problems such as Independent Dominating Set, c-Coloring, and c-Domatic Number are covered by this meta-kernelization result. Our second result applies to MSO expressible optimization problems, such as Minimum Vertex Cover, Minimum Dominating Set, and Maximum Clique. We show that these problems admit a polynomial annotated kernel with a linear number of vertices