Using hyperspectral remote sensing data for retrieving canopy water content

Canopy water content (CWC) is important for understanding functioning of terrestrial ecosystems. Spectral derivatives at the slopes of the 970 nm and 1200 nm water absorption features offer good potential as estimators for CWC. An extensively grazed fen meadow is used as test site in this study. Results are compared with simulations with the PROSAIL radiative transfer model. The first derivative at the left slope of the feature at 970 nm is found to be highly correlated with CWC and the relationship corresponds to the one found with PROSAIL simulations. Use of the derivative over the 940 – 950 nm interval is suggested. In order to avoid interference with absorption by atmospheric water vapour, the potential of estimating CWC using the first derivative at the right slope of the 970 nm absorption feature is recommended. Correlations are a bit lower than those at the left slope, but better than those obtained with water band indices, as shown in previous studies. FieldSpec measurements show that one may use derivatives around the middle of the right slope within the interval between 1015 nm and 1050 nm

Automatic retrieval of crop characteristics: an example for hyperspectral AHS data from the AgriSAR campaign.

This paper presents the results of automated extraction of crop characteristics from hyperspectral earth observation data. The data was acquired with an airborne AHS imaging spectrometer in the framework of the joint European AgriSAR 2006 campaign. The AgriSAR campaign was directed by the ESA and took place at the DEMMIN test site in northeast Germany, an agricultural area dominated by large monocultures. An important objective of this campaign was to establish to what degree novel radar and optical technologies are able to provide accurate agro-meteorological parameters for precision farming purposes. Parameter retrieval in this study was performed with the CRASh approach, a software module based on the inversion of radiative transfer models. CRASh was developed at DLR as part of an automated operative processing chain for future hyperspectral missions. Validation of the model inversion results was performed with field measurements of leaf area index and leaf chlorophyll content which were carried out for winter wheat, winter barley, winter rape, maize, and sugar beet at two time steps during the 2006 growing season. Although spatial patterns of the model results generally coincide with the trends observed in the field, absolute accuracy of the fully automatically extracted variables appeared insufficient for precision agriculture purposes. The unsatisfying results are ascribed to a combination of causes, including angular anisotropy across the swath-width of the flight lines, the configuration of the applied bands, and the large number of model inversion solutions inherent to an automated environment in which little additional information on the observed canopy is present. Employing the airborne version of CRASh and incorporating a priori information on land cover and variable distributions is expected to drastically increase the retrieval performance

Retrieval of Leaf Area Index (LAI) and Soil Water Content (WC) Using Hyperspectral Remote Sensing under Controlled Glass House Conditions for Spring Barley and Sugar Beet

Leaf area index (LAI) and water content (WC) in the root zone are two major hydro-meteorological parameters that exhibit a dominant control on water, energy and carbon fluxes, and are therefore important for any regional eco-hydrological or climatological study. To investigate the potential for retrieving these parameter from hyperspectral remote sensing, we have investigated plant spectral reflectance (400-2,500 nm, ASD FieldSpec3) for two major agricultural crops (sugar beet and spring barley) in the mid-latitudes, treated under different water and nitrogen (N) conditions in a greenhouse experiment over the growing period of 2008. Along with the spectral response, we have measured soil water content and LAI for 15 intensive measurement campaigns spread over the growing season and could demonstrate a significant response of plant reflectance characteristics to variations in water content and nutrient conditions. Linear and non-linear dimensionality analysis suggests that the full band reflectance information is well represented by the set of 28 vegetation spectral indices (SI) and most of the variance is explained by three to a maximum of eight variables. Investigation of linear dependencies between LAI and soil WC and pre-selected SI's indicate that: (1) linear regression using single SI is not sufficient to describe plant/soil variables over the range of experimental conditions, however, some improvement can be seen knowing crop species beforehand; (2) the improvement is superior when applying multiple linear regression using three explanatory SI's approach. In addition to linear investigations, we applied the non-linear CART (Classification and Regression Trees) technique, which finally did not show the potential for any improvement in the retrieval process

Using the right slope of the 970 nm absorption feature for estimating canopy water content

Canopy water content (CWC) is important for understanding the functioning of terrestrial ecosystems. Biogeochemical processes like photosynthesis, transpiration and net primary production are related to foliar water. The first derivative of the reflectance spectrum at wavelengths corresponding to the left slope of the minor water absorption band at 970 nm was found to be highly correlated with CWC and PROSAIL model simulations showed that it was insensitive to differences in leaf and canopy structure, soil background and illumination and observation geometry. However, these wavelengths are also located close to the water vapour absorption band at about 940 nm. In order to avoid interference with absorption by atmospheric water vapour, the potential of estimating CWC using the first derivative at the right slope of the 970 nm absorption feature was studied. Measurements obtained with an ASD FieldSpec spectrometer for three test sites were related to CWC (calculated as the difference between fresh and dry weight). The first site was a homogeneous grassland parcel with a grass/clover mixture. The second site was a heterogeneous floodplain with natural vegetation like grasses and various shrubs. The third site was an extensively grazed fen meadow. Results for all three test sites showed that the first derivative of the reflectance spectrum at the right slope of the 970 nm absorption feature was linearly correlated with CWC. Correlations were a bit lower than those at the left slope (at 942.5 nm) as shown in previous studies, but better than those obtained with water band indices. FieldSpec measurements showed that one may use any derivative around the middle of the right slope within the interval between 1015 nm and 1050 nm. We calculated the average derivative at this interval. The first site with grassland yielded an R2 of 0.39 for the derivative at the previously mentioned interval with CWC (based on 20 samples). The second site at the heterogeneous floodplain yielded an R2 of 0.45 for this derivative with CWC (based on 14 samples). Finally, the third site with the fen meadow yielded an R2 of 0.68 for this derivative with CWC (based on 40 samples). Regression lines between the derivative at the right slope of the 970 nm absorption feature and CWC for all three test sites were similar although vegetation types were quite different. This indicates that results may be transferable to other vegetation types and other site

Estimating the crop leaf area index using hyperspectral remote sensing

AbstractThe leaf area index (LAI) is an important vegetation parameter, which is used widely in many applications. Remote sensing techniques are known to be effective but inexpensive methods for estimating the LAI of crop canopies. During the last two decades, hyperspectral remote sensing has been employed increasingly for crop LAI estimation, which requires unique technical procedures compared with conventional multispectral data, such as denoising and dimension reduction. Thus, we provide a comprehensive and intensive overview of crop LAI estimation based on hyperspectral remote sensing techniques. First, we compare hyperspectral data and multispectral data by highlighting their potential and limitations in LAI estimation. Second, we categorize the approaches used for crop LAI estimation based on hyperspectral data into three types: approaches based on statistical models, physical models (i.e., canopy reflectance models), and hybrid inversions. We summarize and evaluate the theoretical basis and different methods employed by these approaches (e.g., the characteristic parameters of LAI, regression methods for constructing statistical predictive models, commonly applied physical models, and inversion strategies for physical models). Thus, numerous models and inversion strategies are organized in a clear conceptual framework. Moreover, we highlight the technical difficulties that may hinder crop LAI estimation, such as the “curse of dimensionality” and the ill-posed problem. Finally, we discuss the prospects for future research based on the previous studies described in this review

Use spectral derivatives for estimating canopy water content

Hyperspectral remote sensing has demonstrated great potential for accurate retrieval of canopy water content (CWC). This CWC is defined by the product of the leaf equivalent water thickness (EWT) and the leaf area index (LAI). In this paper the spectral information provided by the canopy water absorption feature at 970 nm for estimating and predicting CWC was studied using a modelling approach and in situ spectroradiometric measurements. The relationship of the first derivative at the right slope of the 970 nm water absorption feature with CWC was investigated with the PROSAIL radiative transfer model at a 1 nm sampling interval and tested for field spectroradiometer measurements obtained at an extensively grazed fen meadow as test site. PROSAIL simulations (using coupled SAIL/PROSPECT-5 models) showed a linear relationship between the first derivative over the 1015 – 1050 nm spectral interval and CWC (R2 = 0.97), which was not sensitive for leaf and canopy structure, soil brightness and illumination and observation geometry. For 40 plots at the fen meadow ASD FieldSpec spectral measurements yielded an R2 of 0.68 for the derivative over the 1015 – 1050 nm interval with CWC. This relationship appeared to match the simulated relationship obtained from the PROSAIL model. It showed that one may transfer simulated results to real measurements obtained in the field, thus giving them a physical basis and more general applicability. Consistency of the results confirmed the potential of using simulation results for calibrating the relationship between this first derivative and CWC. Another advantage of using the derivative at the right slope of the 970 nm absorption feature is its distance from the atmospheric water vapour absorption feature at 940 nm. If one cannot correct well for the effects of atmospheric water vapour, the derivative at the right slope is preferred over the one at the left slope

Noise-Resistant Spectral Features for Retrieving Foliar Chemical Parameters

Foliar chemical constituents are important indicators for understanding vegetation growing status and ecosystem functionality. Provided the noncontact and nondestructive traits, the hyperspectral analysis is a superior and efficient method for deriving these parameters. In practice, thespectral noise issue significantly impacts the performance of the hyperspectral retrieving system. To systematically investigate this issue, by introducing varying levels of noise to spectral signals, an assessment on noiseresistant capability of spectral features and models for retrieving concentrations of chlorophyll, carotenoids, and leaf water content was conducted. Given the continuous waveletanalysis (CWA) showed superior performance in extracting critical information associating plants biophysical and biochemical status in recent years, both wavelet features (WFs) and some conventional features (CFs) were chosen for the test. Two datasets including a leaf optical properties experiment dataset (n = 330), and a corn leaf spectral experiment dataset (n = 213) were used for analysis and modeling. The results suggested that the WFs had stronger correlations with all leaf chemical parameters than the CFs. According to an evaluation by decay rate of retrieving error that indicates noise-resistant capability, both WFs and CFs exhibited strong resistance to spectral noise. Particularly for WFs, the noise-resistant capability is relevant to the scale of the features. Based on the identified spectral features, both univariate and multivariate retrieving models were established and achieved satisfactory accuracies. Synthesizing the retrieving accuracy, noise resistivity, and model’s complexity, the optimal univariate WF-models were recommended in practice for retrieving leaf chemical parameters

Optimal Exploitation of the Sentinel-2 Spectral Capabilities for Crop Leaf Area Index Mapping

The continuously increasing demand of accurate quantitative high quality information on land surface properties will be faced by a new generation of environmental Earth observation (EO) missions. One current example, associated with a high potential to contribute to those demands, is the multi-spectral ESA Sentinel-2 (S2) system. The present study focuses on the evaluation of spectral information content needed for crop leaf area index (LAI) mapping in view of the future sensors. Data from a field campaign were used to determine the optimal spectral sampling from available S2 bands applying inversion of a radiative transfer model (PROSAIL) with look-up table (LUT) and artificial neural network (ANN) approaches. Overall LAI estimation performance of the proposed LUT approach (LUTN₅₀) was comparable in terms of retrieval performances with a tested and approved ANN method. Employing seven- and eight-band combinations, the LUTN₅₀ approach obtained LAI RMSE of 0.53 and normalized LAI RMSE of 0.12, which was comparable to the results of the ANN. However, the LUTN50 method showed a higher robustness and insensitivity to different band settings. Most frequently selected wavebands were located in near infrared and red edge spectral regions. In conclusion, our results emphasize the potential benefits of the Sentinel-2 mission for agricultural applications

Investigation of atmospheric effects on retrieval of sun-induced fluorescence using hyperspectral imagery

Significant research progress has recently been made in estimating fluorescence in the oxygen absorption bands, however, quantitative retrieval of fluorescence data is still affected by factors such as atmospheric effects. In this paper, top-of-atmosphere (TOA) radiance is generated by the MODTRAN 4 and SCOPE models. Based on simulated data, sensitivity analysis is conducted to assess the sensitivities of four indicators—depth_absorption_band, depth_nofs-depth_withfs, radiance and Fs/radiance—to atmospheric parameters (sun zenith angle (SZA), sensor height, elevation, visibility (VIS) and water content) in the oxygen absorption bands. The results indicate that the SZA and sensor height are the most sensitive parameters and that variations in these two parameters result in large variations calculated as the variation value/the base value in the oxygen absorption depth in the O2-A and O2-B bands (111.4% and 77.1% in the O2-A band; and 27.5% and 32.6% in the O2-B band, respectively). A comparison of fluorescence retrieval using three methods (Damm method, Braun method and DOAS) and SCOPE Fs indicates that the Damm method yields good results and that atmospheric correction can improve the accuracy of fluorescence retrieval. Damm method is the improved 3FLD method but considering atmospheric effects. Finally, hyperspectral airborne images combined with other parameters (SZA, VIS and water content) are exploited to estimate fluorescence using the Damm method and 3FLD method. The retrieval fluorescence is compared with the field measured fluorescence, yielding good results (R2 = 0.91 for Damm vs. SCOPE SIF; R2 = 0.65 for 3FLD vs. SCOPE SIF). Five types of vegetation, including ailanthus, elm, mountain peach, willow and Chinese ash, exhibit consistent associations between the retrieved fluorescence and field measured fluorescence

The retrieval of plant functional traits from canopy spectra through RTM-inversions and statistical models are both critically affected by plant phenology

Plant functional traits play a key role in the assessment of ecosystem processes and properties. Optical remote sensing is ascribed a high potential in capturing those traits and their spatiotemporal patterns. In vegetation remote sensing, reflectance-based retrieval methods are either statistical (relying on empirical observations) or physically-based (based on inversions of a radiative transfer model, RTM). Both trait retrieval approaches remain poorly investigated regarding phenology. However, within the phenology of a plant, its leaf constituents, canopy structure, and the presence of phenology-related organs (i.e., flowers or inflorescence) vary considerably – and so does its reflectance. We, therefore, addressed the question of how plant phenology affects the predictive performance of both statistical and RTM-based methods and how this effect differs between traits. For a complete growing season, we weekly measured traits of 45 herbaceous plant species together with hyperspectral canopy reflectance (ASD FieldSpec III). Plants were grown in an experimental setup. The investigated traits comprised Leaf Area Index (LAI) and the leaf traits chlorophyll, anthocyanins, carotenoids, equivalent water thickness, and leaf mass per area. We compared the predictive performances of PLSR models and three variants of PROSAIL inversions based on (1) all observations and based on (2) a phenological subset where flowering plants were excluded and only those observations most suitable for modeling were kept. Our results show that both statistical and RTM-based trait retrievals were largely affected by phenology. For carotenoids for example, R$^{2}$ decreased from 0.58 at non-flowering canopies to 0.25 at 100% flowering canopies. Temporal trends were diverse. LAI and equivalent water thickness were best estimated earlier in the growing season; chlorophyll and carotenoids towards senescence. PLSR models showed generally higher bias than the PROSAIL-based retrieval approaches. Lookup-table inversion of PROSAIL in combination with a continuous wavelet transformation of reflectance showed highest accuracies. We found RTM-based retrieval not to be as accurate and transferable as previously indicated. Our results suggest that phenology is essential for accurate retrieval of plant functional traits and varies depending on the studied species and functional traits, respectively