The role of dwelling type when estimating the effect of magnetic fields on childhood leukemia in the California Power Line Study (CAPS).

PurposeThe type of dwelling where a child lives is an important factor when considering residential exposure to environmental agents. In this paper, we explore its role when estimating the potential effects of magnetic fields (MF) on leukemia using data from the California Power Line Study (CAPS). In this context, dwelling type could be a risk factor, a proxy for other risk factors, a cause of MF exposure, a confounder, an effect-measure modifier, or some combination.MethodsWe obtained information on type of dwelling at birth on over 2,000 subjects. Using multivariable-adjusted logistic regression, we assessed whether dwelling type was a risk factor for childhood leukemia, which covariates and MF exposures were associated with dwelling type, and whether dwelling type was a potential confounder or an effect-measure modifier in the MF-leukemia relationship under the assumption of no-uncontrolled confounding.ResultsA majority of children lived in single-family homes or duplexes (70%). Dwelling type was associated with race/ethnicity and socioeconomic status but not with childhood leukemia risk, after other adjustments, and did not alter the MF-leukemia relationship upon adjustment as a potential confounder. Stratification revealed potential effect-measure modification by dwelling type on the multiplicative scale.ConclusionDwelling type does not appear to play a significant role in the MF-leukemia relationship in the CAPS dataset as a leukemia risk factor or confounder. Future research should explore the role of dwelling as an effect-measure modifier of the MF-leukemia association

Case-based retrieval framework for gene expression data

© the authors, publisher and licensee Libertas academica Limited. Background: The process of retrieving similar cases in a case-based reasoning system is considered a big challenge for gene expression data sets. The huge number of gene expression values generated by microarray technology leads to complex data sets and similarity measures for high-dimensional data are problematic. Hence, gene expression similarity measurements require numerous machine-learning and data-mining techniques, such as feature selection and dimensionality reduction, to be incorporated into the retrieval process.Methods: This article proposes a case-based retrieval framework that uses a k-nearest-neighbor classifier with a weighted-feature-based similarity to retrieve previously treated patients based on their gene expression profiles. Results: The herein-proposed methodology is validated on several data sets: a childhood leukemia data set collected from The Children’s Hospital at Westmead, as well as the Colon cancer, the National Cancer Institute (NCI), and the Prostate cancer data sets. Results obtained by the proposed framework in retrieving patients of the data sets who are similar to new patients are as follows: 96% accuracy on the childhood leukemia data set, 95% on the NCI data set, 93% on the Colon cancer data set, and 98% on the Prostate cancer data set. Conclusion: The designed case-based retrieval framework is an appropriate choice for retrieving previous patients who are similar to a new patient, on the basis of their gene expression data, for better diagnosis and treatment of childhood leukemia. Moreover, this framework can be applied to other gene expression data sets using some or all of its steps

ANMM4CBR: a case-based reasoning method for gene expression data classification

<p>Abstract</p> <p>Background</p> <p>Accurate classification of microarray data is critical for successful clinical diagnosis and treatment. The "curse of dimensionality" problem and noise in the data, however, undermines the performance of many algorithms.</p> <p>Method</p> <p>In order to obtain a robust classifier, a novel Additive Nonparametric Margin Maximum for Case-Based Reasoning (ANMM4CBR) method is proposed in this article. ANMM4CBR employs a case-based reasoning (CBR) method for classification. CBR is a suitable paradigm for microarray analysis, where the rules that define the domain knowledge are difficult to obtain because usually only a small number of training samples are available. Moreover, in order to select the most informative genes, we propose to perform feature selection via additively optimizing a nonparametric margin maximum criterion, which is defined based on gene pre-selection and sample clustering. Our feature selection method is very robust to noise in the data.</p> <p>Results</p> <p>The effectiveness of our method is demonstrated on both simulated and real data sets. We show that the ANMM4CBR method performs better than some state-of-the-art methods such as support vector machine (SVM) and <it>k </it>nearest neighbor (<it>k</it>NN), especially when the data contains a high level of noise.</p> <p>Availability</p> <p>The source code is attached as an additional file of this paper.</p

Fuzzy Inspired Case based Reasoning for Hematology Malignancies Classification

Conventional approaches for collecting and reporting hematological data as well as diagnosing hematologic malignancies such as leukemia, anemia, e.t.c are based on subjective professional physician personal opinions or experiences which are influenced by human error, dependent on human-to-human judgments, time consuming processes and the blood results are non-reproducible. In the light of those human limitations identified, an automatic or semi-automatic classification and corrective method is required because it reduces the load on human observers and accuracy is not affected due to fatigue. Case-Based Reasoning (CBR) as a multi-disciplinary subject that focuses on the reuse of past experiences or cases to proffer solution to new cases was adopted and combined with the power of Fuzzy logic to design a software model that will effectively mine hematology data. This study aim at helping the medical practitioners to diagnose and provide corrective treatment to both normal patients and patients with hematology disorder at the early stage which can reduce the number of deaths. This aim is achievable by developing an intelligent expert system based on fuzzy logic and case-based reasoning for classification of hematology malignancy

A case-based reasoning framework for prediction of stroke

© Springer Nature Singapore Pte Ltd. 2018. Case-based reasoning (CBR) has been a popular method in health care sector from the last two decades. It is used for analysis, prediction, diagnosis and recommending treatment for patients. This research purposes a conceptual CBR framework for stroke disease prediction that uses previous case-based knowledge. The outcomes of this approach not only assist in stroke disease decision-making, but also will be very useful for prevention and early treatment of patients

DERMA: A melanoma diagnosis platform based on collaborative multilabel analog reasoning

The number of melanoma cancer-related death has increased over the last few years due to the new solar habits. Early diagnosis has become the best prevention method. This work presents a melanoma diagnosis architecture based on the collaboration of several multilabel case-based reasoning subsystems called DERMA. The system has to face up several challenges that include data characterization, pattern matching, reliable diagnosis, and self-explanation capabilities. Experiments using subsystems specialized in confocal and dermoscopy images have provided promising results for helping experts to assess melanoma diagnosis

Computational Intelligence Techniques for Classification in Microarray Analysis

During the last few years there has been a growing need for using computational intelligence techniques to analyze microarray data. The aim of the system presented in this study is to provide innovative decision support techniques for classifying data from microarrays and for extracting knowledge about the classification process. The computational intelligence techniques used in this chapter follow the case-based reasoning paradigm to emulate the steps followed in expression analysis. This work presents a novel filtering technique based on statistical methods, a new clustering technique that uses ESOINN (Enhanced Self-Organizing Incremental Neuronal Network), and a knowledge extraction technique based on the RIPPER algorithm. The system presented within this chapter has been applied to classify CLL patients and extract knowledge about the classification process. The results obtained permit us to conclude that the system provides a notable reduction of the dimensionality of the data obtained from microarrays. Moreover, the classification process takes the detection of relevant and irrelevant probes into account, which is fundamental for subsequent classification and an extraction of knowledge tool with a graphical interface to explain the classification process, and has been much appreciated by the human experts. Finally, the philosophy of the CBR systems facilitates the resolution of new problems using past experiences, which is very appropriate regarding the classification of leukemia

Case-based reasoning as a decision support system for cancer diagnosis: A case study

Microarray technology can measure the expression levels of thousands of genes in an experiment. This fact makes the use of computational methods in cancer research absolutely essential. One of the possible applications is in the use of Artificial Intelligence techniques. Several of these techniques have been used to analyze expression arrays, but there is a growing need for new and effective solutions. This paper presents a Case-based reasoning (CBR) system for automatic classification of leukemia patients from microarray data. The system incorporates novel algorithms for data mining that allow filtering, classification, and knowledge extraction. The system has been tested and the results obtained are presented in this paper

CBR System with Reinforce in the Revision Phase for the Classification of CLL Leukemia

Microarray technology allows measuring the expression levels of thousands of genes providing huge quantities of data to be analyzed. This fact makes fundamental the use of computational methods as well as new intelligent algorithms. This paper presents a Case-based reasoning (CBR) system for automatic classification of microarray data. The CBR system incorporates novel algorithms for data classification and knowledge discovery. The system has been tested in a case study and the results obtained are presented

Applying CBR Systems to Micro Array Data Classification

Microarray technology allows to measureing the expression levels of thousands of genes in an experiment. This technology required requires computational solutions capable of dealing with great amounts of data and as well as techniques to explore the data and extract knowledge which allow patients classification. This paper presents a systems based on Case-based reasoning (CBR) for automatic classification of leukemia patients from microarray data. The system incorporates novel algorithms for data mining that allow to filter and classify as well as extraction of knowledge. The system has been tested and the results obtained are presented in this paper