An exploratory study of user-centered indexing of published biomedical images

User-centered image indexing—often reported in research on collaborative tagging, social classification, folksonomy, or personal tagging—has received a considerable amount of attention [1-7]. The general themes in more recent studies on this topic include user-centered tagging behavior by types of images, pros and cons of user-created tags as compared to controlled index terms; assessment of the value added by user-generated tags, and comparison of automatic indexing versus human indexing in the context of web digital image collections such as Flickr. For instance, Golbeck\u27s finding restates the importance of indexer experience, order, and type of images [8]. Rorissa has found a significant difference in the number of terms assigned when using Flickr tags or index terms on the same image collection, which might suggest a difference in level of indexing by professional indexers and Flickr taggers [9]. Studies focusing on users and their tagging experiences and user-generated tags suggest ideas to be implemented as part of a personalized, customizable tagging system. Additionally, Stvilia and her colleagues have found that tagger age and image familiarity are negatively related, while indexing and tagging experience were positively associated [10]. A major question for biomedical image indexing is whether the results of the aforementioned studies, all of which dealt with general image collections, are applicable to images in the medical domain. In spite of the importance of visual material in medical education and the prevalence of digitized images in formal medical practice and education, medical students have few opportunities to annotate biomedical images. End-user training could improve the quality of image indexing and so improve retrieval. In a pilot assessment of image indexing and retrieval quality by medical students, this study compared concept completion and retrieval effectiveness of indexing terms generated by medical students on thirty-nine histology images selected from the PubMed Central (PMC) database. Indexing instruction was only given to an intervention group to test its impact on the quality of end-user image indexing

SocialSensor: sensing user generated input for improved media discovery and experience

SocialSensor will develop a new framework for enabling real-time multimedia indexing and search in the Social Web. The project moves beyond conventional text-based indexing and retrieval models by mining and aggregating user inputs and content over multiple social networking sites. Social Indexing will incorporate information about the structure and activity of the users‟ social network directly into the multimedia analysis and search process. Furthermore, it will enhance the multimedia consumption experience by developing novel user-centric media visualization and browsing paradigms. For example, SocialSensor will analyse the dynamic and massive user contributions in order to extract unbiased trending topics and events and will use social connections for improved recommendations. To achieve its objectives, SocialSensor introduces the concept of Dynamic Social COntainers (DySCOs), a new layer of online multimedia content organisation with particular emphasis on the real-time, social and contextual nature of content and information consumption. Through the proposed DySCOs-centered media search, SocialSensor will integrate social content mining, search and intelligent presentation in a personalized, context and network-aware way, based on aggregation and indexing of both UGC and multimedia Web content

User Centered and Ontology Based InformationRetrieval System for Life Sciences

Because of the increasing number of electronic data, designing efficient tools to retrieve and exploit documents is a major challenge. Current search engines suffer from two main drawbacks: there is limited interaction with the list of retrieved documents and no explanation for their adequacy to the query. Users may thus be confused by the selection and have no idea how to adapt their query so that the results match their expectations. 
This talk describes a request method and an environment based on aggregating models to assess the relevance of documents annotated by concepts of ontology. The selection of documents is then displayed in a semantic map to provide graphical indications that make explicit to what extent they match the user’s query; this man/machine interface favors a more interactive exploration of data corpus.
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A suite of software for processing MicroED data of extremely small protein crystals.

Electron diffraction of extremely small three-dimensional crystals (MicroED) allows for structure determination from crystals orders of magnitude smaller than those used for X-ray crystallography. MicroED patterns, which are collected in a transmission electron microscope, were initially not amenable to indexing and intensity extraction by standard software, which necessitated the development of a suite of programs for data processing. The MicroED suite was developed to accomplish the tasks of unit-cell determination, indexing, background subtraction, intensity measurement and merging, resulting in data that can be carried forward to molecular replacement and structure determination. This ad hoc solution has been modified for more general use to provide a means for processing MicroED data until the technique can be fully implemented into existing crystallographic software packages. The suite is written in Python and the source code is available under a GNU General Public License

CHORUS Deliverable 4.5: Report of the 3rd CHORUS Conference

The third and last CHORUS conference on Multimedia Search Engines took place from the 26th to the 27th of May 2009 in Brussels, Belgium. About 100 participants from 15 European countries, the US, Japan and Australia learned about the latest developments in the domain. An exhibition of 13 stands presented 16 research projects currently ongoing around the world

Recent Developments in Cultural Heritage Image Databases: Directions for User-Centered Design

published or submitted for publicatio

A picture is worth a thousand words: The perplexing problem of indexing images

Indexing images has always been problematic due to their richness of content and innate subjectivity. Three traditional approaches to indexing images are described and analyzed. An introduction of the contemporary use of social tagging is presented along with its limitations. Traditional practices can continue to be used as a stand-alone solution, however deficiencies limit retrieval. A collaborative technique is supported by current research and a model created by the authors for its inception is explored. CONTENTdm® is used as an example to illustrate tools that can help facilitate this process. Another potential solution discussed is the expansion of algorithms used in computer extraction to include the input and influence of human indexer intelligence. Further research is recommended in each area to discern the most effective method

Personal Photo Indexing

Sorting one’s own private photo collection is a time consuming and tedious task. We demonstrate our event-centered approach to perform this task fully automatically. In the course of the demonstration, we either use our own photo collections, or invite the conference visitors to bring their own cameras and photos. We will sort the photos into a semantically meaningful hierarchy for the users within a couple of minutes. Events as a media aggregator allow a user to manage and annotate a photo collection in more convenient and natural to the human being way. Based on the recognized user behavior the application is able to re- veal the nature of an event and build its hierarchy with a event/sub-event relationship. One important prerequisite of our approach is a precise GPS based spatial annotation of the photos. To accommodate for devices without GPS chips or temporary low GPS perception, we propose an approach to enrich the collection with automatically estimated GPS data by semantically interpolating possible routes of the user. We are positive that we can provide a well received service for the conference visitors, especially since the conference venue will trigger a lot of memorable photos. Large scale experimental validation showed that the approach is able to recreate a user’s desired hierarchy with an F-measure of about 0.8

Integrating digital document acquisition into a university library : A case study of social and organizational challenges

In this article we report on the effort of the university library of the Vienna University of Economics and Business Administration to integrate a digital library component for research documents authored at the university into the existing library infrastructure. Setting up a digital library has become a relatively easy task using the current data base technology and the components and tools freely available. However, to integrate such a digital library into existing library systems and to adapt existing document acquisition work-flows in the organization are non-trivial tasks. We use a research frame work to identify the key players in this change process and to analyze their incentive structures. Then we describe the light-weight integration approach employed by our university and show how it provides incentives to the key players and at the same time requires only minimal adaptation of the organization in terms of changing existing work-flows. Our experience suggests that this light-weight integration offers a cost efficient and low risk intermediate step towards switching to exclusive digital document acquisition