4,994 research outputs found
kLog: A Language for Logical and Relational Learning with Kernels
We introduce kLog, a novel approach to statistical relational learning.
Unlike standard approaches, kLog does not represent a probability distribution
directly. It is rather a language to perform kernel-based learning on
expressive logical and relational representations. kLog allows users to specify
learning problems declaratively. It builds on simple but powerful concepts:
learning from interpretations, entity/relationship data modeling, logic
programming, and deductive databases. Access by the kernel to the rich
representation is mediated by a technique we call graphicalization: the
relational representation is first transformed into a graph --- in particular,
a grounded entity/relationship diagram. Subsequently, a choice of graph kernel
defines the feature space. kLog supports mixed numerical and symbolic data, as
well as background knowledge in the form of Prolog or Datalog programs as in
inductive logic programming systems. The kLog framework can be applied to
tackle the same range of tasks that has made statistical relational learning so
popular, including classification, regression, multitask learning, and
collective classification. We also report about empirical comparisons, showing
that kLog can be either more accurate, or much faster at the same level of
accuracy, than Tilde and Alchemy. kLog is GPLv3 licensed and is available at
http://klog.dinfo.unifi.it along with tutorials
SkILL - a Stochastic Inductive Logic Learner
Probabilistic Inductive Logic Programming (PILP) is a rel- atively unexplored
area of Statistical Relational Learning which extends classic Inductive Logic
Programming (ILP). This work introduces SkILL, a Stochastic Inductive Logic
Learner, which takes probabilistic annotated data and produces First Order
Logic theories. Data in several domains such as medicine and bioinformatics
have an inherent degree of uncer- tainty, that can be used to produce models
closer to reality. SkILL can not only use this type of probabilistic data to
extract non-trivial knowl- edge from databases, but it also addresses
efficiency issues by introducing a novel, efficient and effective search
strategy to guide the search in PILP environments. The capabilities of SkILL
are demonstrated in three dif- ferent datasets: (i) a synthetic toy example
used to validate the system, (ii) a probabilistic adaptation of a well-known
biological metabolism ap- plication, and (iii) a real world medical dataset in
the breast cancer domain. Results show that SkILL can perform as well as a
deterministic ILP learner, while also being able to incorporate probabilistic
knowledge that would otherwise not be considered
Learning First-Order Definitions of Functions
First-order learning involves finding a clause-form definition of a relation
from examples of the relation and relevant background information. In this
paper, a particular first-order learning system is modified to customize it for
finding definitions of functional relations. This restriction leads to faster
learning times and, in some cases, to definitions that have higher predictive
accuracy. Other first-order learning systems might benefit from similar
specialization.Comment: See http://www.jair.org/ for any accompanying file
A sequence-length sensitive approach to learning biological grammars using inductive logic programming.
This thesis aims to investigate if the ideas behind compression principles, such as the Minimum Description Length, can help us to improve the process of learning biological grammars from protein sequences using Inductive Logic Programming (ILP). Contrary to most traditional ILP learning problems, biological sequences often have a high variation in their length. This variation in length is an important feature of biological sequences which should not be ignored by ILP systems. However we have identified that some ILP systems do not take into account the length of examples when evaluating their proposed hypotheses. During the learning process, many ILP systems use clause evaluation functions to assign a score to induced hypotheses, estimating their quality and effectively influencing the search. Traditionally, clause evaluation functions do not take into account the length of the examples which are covered by the clause. We propose L-modification, a way of modifying existing clause evaluation functions so that they take into account the length of the examples which they learn from. An empirical study was undertaken to investigate if significant improvements can be achieved by applying L-modification to a standard clause evaluation function. Furthermore, we generally investigated how ILP systems cope with the length of examples in training data. We show that our L-modified clause evaluation function outperforms our benchmark function in every experiment we conducted and thus we prove that L-modification is a useful concept. We also show that the length of the examples in the training data used by ILP systems does have an undeniable impact on the results
Transforming Graph Representations for Statistical Relational Learning
Relational data representations have become an increasingly important topic
due to the recent proliferation of network datasets (e.g., social, biological,
information networks) and a corresponding increase in the application of
statistical relational learning (SRL) algorithms to these domains. In this
article, we examine a range of representation issues for graph-based relational
data. Since the choice of relational data representation for the nodes, links,
and features can dramatically affect the capabilities of SRL algorithms, we
survey approaches and opportunities for relational representation
transformation designed to improve the performance of these algorithms. This
leads us to introduce an intuitive taxonomy for data representation
transformations in relational domains that incorporates link transformation and
node transformation as symmetric representation tasks. In particular, the
transformation tasks for both nodes and links include (i) predicting their
existence, (ii) predicting their label or type, (iii) estimating their weight
or importance, and (iv) systematically constructing their relevant features. We
motivate our taxonomy through detailed examples and use it to survey and
compare competing approaches for each of these tasks. We also discuss general
conditions for transforming links, nodes, and features. Finally, we highlight
challenges that remain to be addressed
Probabilistic Inductive Querying Using ProbLog
We study how probabilistic reasoning and inductive querying can be combined within ProbLog, a recent probabilistic extension of Prolog. ProbLog can be regarded as a database system that supports both probabilistic and inductive reasoning through a variety of querying mechanisms. After a short introduction to ProbLog, we provide a survey of the different types of inductive queries that ProbLog supports, and show how it can be applied to the mining of large biological networks.Peer reviewe
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