3,326 research outputs found
Serial Correlations in Single-Subject fMRI with Sub-Second TR
When performing statistical analysis of single-subject fMRI data, serial
correlations need to be taken into account to allow for valid inference.
Otherwise, the variability in the parameter estimates might be under-estimated
resulting in increased false-positive rates. Serial correlations in fMRI data
are commonly characterized in terms of a first-order autoregressive (AR)
process and then removed via pre-whitening. The required noise model for the
pre-whitening depends on a number of parameters, particularly the repetition
time (TR). Here we investigate how the sub-second temporal resolution provided
by simultaneous multislice (SMS) imaging changes the noise structure in fMRI
time series. We fit a higher-order AR model and then estimate the optimal AR
model order for a sequence with a TR of less than 600 ms providing whole brain
coverage. We show that physiological noise modelling successfully reduces the
required AR model order, but remaining serial correlations necessitate an
advanced noise model. We conclude that commonly used noise models, such as the
AR(1) model, are inadequate for modelling serial correlations in fMRI using
sub-second TRs. Rather, physiological noise modelling in combination with
advanced pre-whitening schemes enable valid inference in single-subject
analysis using fast fMRI sequences
Experimental Design Modulates Variance in BOLD Activation: The Variance Design General Linear Model
Typical fMRI studies have focused on either the mean trend in the
blood-oxygen-level-dependent (BOLD) time course or functional connectivity
(FC). However, other statistics of the neuroimaging data may contain important
information. Despite studies showing links between the variance in the BOLD
time series (BV) and age and cognitive performance, a formal framework for
testing these effects has not yet been developed. We introduce the Variance
Design General Linear Model (VDGLM), a novel framework that facilitates the
detection of variance effects. We designed the framework for general use in any
fMRI study by modeling both mean and variance in BOLD activation as a function
of experimental design. The flexibility of this approach allows the VDGLM to i)
simultaneously make inferences about a mean or variance effect while
controlling for the other and ii) test for variance effects that could be
associated with multiple conditions and/or noise regressors. We demonstrate the
use of the VDGLM in a working memory application and show that engagement in a
working memory task is associated with whole-brain decreases in BOLD variance.Comment: 18 pages, 7 figure
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