Assessing the potential of autonomous submarine gliders for ecosystem monitoring across multiple trophic levels (plankton to cetaceans) and pollutants in shallow shelf seas

A combination of scientific, economic, technological and policy drivers is behind a recent upsurge in the use of marine autonomous systems (and accompanying miniaturized sensors) for environmental mapping and monitoring. Increased spatial–temporal resolution and coverage of data, at reduced cost, is particularly vital for effective spatial management of highly dynamic and heterogeneous shelf environments. This proof-of-concept study involves integration of a novel combination of sensors onto buoyancy-driven submarine gliders, in order to assess their suitability for ecosystem monitoring in shelf waters at a variety of trophic levels. Two shallow-water Slocum gliders were equipped with CTD and fluorometer to measure physical properties and chlorophyll, respectively. One glider was also equipped with a single-frequency echosounder to collect information on zooplankton and fish distribution. The other glider carried a Passive Acoustic Monitoring system to detect and record cetacean vocalizations, and a passive sampler to detect chemical contaminants in the water column. The two gliders were deployed together off southwest UK in autumn 2013, and targeted a known tidal-mixing front west of the Isles of Scilly. The gliders’ mission took about 40 days, with each glider travelling distances of >1000 km and undertaking >2500 dives to depths of up to 100 m. Controlling glider flight and alignment of the two glider trajectories proved to be particularly challenging due to strong tidal flows. However, the gliders continued to collect data in poor weather when an accompanying research vessel was unable to operate. In addition, all glider sensors generated useful data, with particularly interesting initial results relating to subsurface chlorophyll maxima and numerous fish/cetacean detections within the water column. The broader implications of this study for marine ecosystem monitoring with submarine gliders are discussed

The Hierarchic treatment of marine ecological information from spatial networks of benthic platforms

Measuring biodiversity simultaneously in different locations, at different temporal scales, and over wide spatial scales is of strategic importance for the improvement of our understanding of the functioning of marine ecosystems and for the conservation of their biodiversity. Monitoring networks of cabled observatories, along with other docked autonomous systems (e.g., Remotely Operated Vehicles [ROVs], Autonomous Underwater Vehicles [AUVs], and crawlers), are being conceived and established at a spatial scale capable of tracking energy fluxes across benthic and pelagic compartments, as well as across geographic ecotones. At the same time, optoacoustic imaging is sustaining an unprecedented expansion in marine ecological monitoring, enabling the acquisition of new biological and environmental data at an appropriate spatiotemporal scale. At this stage, one of the main problems for an effective application of these technologies is the processing, storage, and treatment of the acquired complex ecological information. Here, we provide a conceptual overview on the technological developments in the multiparametric generation, storage, and automated hierarchic treatment of biological and environmental information required to capture the spatiotemporal complexity of a marine ecosystem. In doing so, we present a pipeline of ecological data acquisition and processing in different steps and prone to automation. We also give an example of population biomass, community richness and biodiversity data computation (as indicators for ecosystem functionality) with an Internet Operated Vehicle (a mobile crawler). Finally, we discuss the software requirements for that automated data processing at the level of cyber-infrastructures with sensor calibration and control, data banking, and ingestion into large data portals.Peer ReviewedPostprint (published version

Listening forward: approaching marine biodiversity assessments using acoustic methods

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Mooney, T. A., Di Iorio, L., Lammers, M., Lin, T., Nedelec, S. L., Parsons, M., Radford, C., Urban, E., & Stanley, J. Listening forward: approaching marine biodiversity assessments using acoustic methods. Royal Society Open Science, 7(8), (2020): 201287, doi:10.1098/rsos.201287.Ecosystems and the communities they support are changing at alarmingly rapid rates. Tracking species diversity is vital to managing these stressed habitats. Yet, quantifying and monitoring biodiversity is often challenging, especially in ocean habitats. Given that many animals make sounds, these cues travel efficiently under water, and emerging technologies are increasingly cost-effective, passive acoustics (a long-standing ocean observation method) is now a potential means of quantifying and monitoring marine biodiversity. Properly applying acoustics for biodiversity assessments is vital. Our goal here is to provide a timely consideration of emerging methods using passive acoustics to measure marine biodiversity. We provide a summary of the brief history of using passive acoustics to assess marine biodiversity and community structure, a critical assessment of the challenges faced, and outline recommended practices and considerations for acoustic biodiversity measurements. We focused on temperate and tropical seas, where much of the acoustic biodiversity work has been conducted. Overall, we suggest a cautious approach to applying current acoustic indices to assess marine biodiversity. Key needs are preliminary data and sampling sufficiently to capture the patterns and variability of a habitat. Yet with new analytical tools including source separation and supervised machine learning, there is substantial promise in marine acoustic diversity assessment methods.Funding for development of this article was provided by the collaboration of the Urban Coast Institute (Monmouth University, NJ, USA), the Program for the Human Environment (The Rockefeller University, New York, USA) and the Scientific Committee on Oceanic Research. Partial support was provided to T.A.M. from the National Science Foundation grant OCE-1536782

MarinEye - A tool for marine monitoring

This work presents an autonomous system for marine integrated physical-chemical and biological monitoring – the MarinEye system. It comprises a set of sensors providing diverse and relevant information for oceanic environment characterization and marine biology studies. It is constituted by a physicalchemical water properties sensor suite, a water filtration and sampling system for DNA collection, a plankton imaging system and biomass assessment acoustic system. The MarinEye system has onboard computational and logging capabilities allowing it either for autonomous operation or for integration in other marine observing systems (such as Observatories or robotic vehicles. It was designed in order to collect integrated multi-trophic monitoring data. The validation in operational environment on 3 marine observatories: RAIA, BerlengasWatch and Cascais on the coast of Portugal is also discussed.info:eu-repo/semantics/publishedVersio

Supplementary report to the final report of the coral reef expert group: S6. Novel technologies in coral reef monitoring

[Extract] This report summarises a review of current technological advances applicable to coral reef monitoring, with a focus on the Great Barrier Reef Marine Park (the Marine Park). The potential of novel technologies to support coral reef monitoring within the Reef 2050 Integrated Monitoring and Reporting Program (RIMReP) framework was evaluated based on their performance, operational maturity and compatibility with traditional methods. Given the complexity of this evaluation, this exercise was systematically structured to address the capabilities of technologies in terms of spatial scales and ecological indicators, using a ranking system to classify expert recommendations.An accessible copy of this report is not yet available from this repository, please contact [email protected] for more information

Autonomous Systems for the Environmental Characterization of Lagoons

This chapter reviews the state of the art in robotics and autonomous systems (RAS) for monitoring the environmental characteristics of lagoons, as well as potential future uses of such technologies that could contribute to enhancing current monitoring programmes. Particular emphasis will be given to unmanned aerial vehicles (UAVs), autonomous under water vehicles (AUVs), remotely operated underwater vehicles (ROVs) and (semi-)autonomous boats. Recent technological advances in UAVs, AUVs and ROVs have demonstrated that high-resolution data (e.g. 0.4 cm imagery resolution) can be gathered when bespoke sensors are incorporated within these platforms. This in turn enables the accurate quantification of key metrics within lagoon environments, such as coral morphometries. For example, coral height and width can now be estimated remotely with errors below 12.6 and 14.7 cm, respectively. The chapter will explore how the use of such technologies in combination could improve the understanding of lagoon environments through increased knowledge of the spatial and temporal variations of parameters of interest. Within this context, both advantages and limitations of the proposed approaches will be highlighted and described from operational, logistical, and regulatory considerations. The chapter will be based on recent peer-reviewed research outputs obtained by the authors

An efficient scalable scheduling mac protocol for underwater sensor networks

Underwater Sensor Networks (UWSNs) utilise acoustic waves with comparatively lower loss and longer range than those of electromagnetic waves. However, energy remains a challenging issue in addition to long latency, high bit error rate, and limited bandwidth. Thus, collision and retransmission should be efficiently handled at Medium Access Control (MAC) layer in order to reduce the energy cost and also to improve the throughput and fairness across the network. In this paper, we propose a new reservation-based distributed MAC protocol called ED-MAC, which employs a duty cycle mechanism to address the spatial-temporal uncertainty and the hidden node problem to effectively avoid collisions and retransmissions. ED-MAC is a conflict-free protocol, where each sensor schedules itself independently using local information. Hence, ED-MAC can guarantee conflict-free transmissions and receptions of data packets. Compared with other conflict-free MAC protocols, ED-MAC is distributed and more reliable, i.e., it schedules according to the priority of sensor nodes which based on their depth in the network. We then evaluate design choices and protocol performance through extensive simulation to study the load effects and network scalability in each protocol. The results show that ED-MAC outperforms the contention-based MAC protocols and achieves a significant improvement in terms of successful delivery ratio, throughput, energy consumption, and fairness under varying offered traffic and number of nodes

Low probability of detection underwater acoustic communications

Low probability of detection (LPD) underwater acoustic communications are an essential requirement for command and control of autonomous underwater vehicles (AUV) or submarines performing covert missions, avoiding their detection while communicating. Based on low power signals, these covert communications may also extend the autonomy of battery-operated AUVs, and contribute to reducing the impacts of the environmental noise level on marine life. The present thesis aims to develop LPD communications based on modeled and real data from three shallow water experiments. Thus, a superimposed training method has been proposed. A bitstream is created superimposing a long probe to the message before transmission. Computationally simple, the algorithm explores temporal diversity to increase the processing gain and uses a Wiener filter for equalization. Experimental results presented bit-error rates (BER) < 10−2 for signal-tonoise ratios (SNR) < −8 dB. To understand the effects of coastal upwelling phenomena over low SNR communications, a study compares the acoustic propagation for different sound speed profiles using a propagation model and analyzes data from the BioCom’19 experiment, performed off Cabo Frio Island (Brazil). Temporal and spatial coherence of low power signals propagating in this harsh environment are estimated, and both a criterion for multichannel combining and a double Wiener filter to improve equalization are presented. Passive time-reversal (pTR) techniques have been widely employed for communications. To address the pTR channel mismatch due to the environmental variability between the probe and the data transmissions, this work proposes a superimposed training pTR (STpTR) approach for single and multichannel systems. Despite the high noise levels, varying from -5 to +6 dB, the STpTR combined with a Wiener filter achieved BER < 10−2, for bit rates up to 220 bps. To improve covert communications for AUVs, this work also presents a study about vector sensor multichannel combining. Using the STpTR approach, results from an experiment on the coast of Algarve/Portugal indicate that combining the pressure and particle velocity channels of a vector sensor may provide an average SNR and mean squared-error gain of up to 9.4 and 3.1 dB, respectively, compared to the pressure channel. Therefore, a better understanding of the environment combined with the superimposed training pTR using a vector sensor may improve the LPD communication system’s performance and robustness while keeping covertness.No ´últimos anos, os trabalhos de investigação sobre comunicações acústicas submarinas com baixa probabilidade de deteção (BPD) tem sido incentivados pela indústria, pelos governos, e pela própria academia em razão de suas m´múltiplas aplicações. Na ´área militar, as comunicações BPD permitem que submarinos e veículos autónomos possam se comunicar sem serem detectados. Na ´área civil, permitem a economia de energia de sensores alimentados por baterias, aumentando o tempo de funcionamento, bem como contribui para reduzir os impactos sobre a vida marinha causados pelos altos n´ıveis de ru´ıdo submarino, entre outras aplica¸c˜oes. Neste contexto, esta tese pretende desenvolver comunica¸c˜oes BPD utilizando um modelo de propaga¸c˜ao ac´ustica e dados obtidos a partir de trˆes experimentos em ´aguas rasas. Este trabalho apresenta um m´etodo de treinamento superposto para comunica¸c˜oes submarinas em um ambiente com baixa rela¸c˜ao sinal/ru´ıdo, e demonstra sua aplica¸c˜ao para comunica¸c˜oes BPD. Computacionalmente simples, o m´etodo foi desenvolvido para funcionar com um ´único projetor acústico, transmitindo com baixa potência, e um hidrofone, sem o ganho de um arranjo de sensores distribuídos no espaço. Antes da transmissão, uma longa sequência de comprimento m´máximo ´e somada `a mensagem para efeitos de equalização e sincronismo. Os dois sinais são binários, modulados em fase e possuem 2047 bits. Porém, possuem amplitudes diferentes. Na realidade, a amplitude do sinal de treinamento ´e ligeiramente superior `a da mensagem. Em um ambiente com baixa rela¸c˜ao sinal ru´ıdo, um sinal de treinamento mais forte permite ocultar a mensagem a ser transmitida, bem como melhorar o ganho para a estima¸c˜ao da resposta impulsiva e para a sincroniza¸c˜ao do sistema. A mensagem ´e composta por 3 bits nulos e 4 sequˆencias de 511 bits. Delimitados por uma curta sequˆencia de comprimento m´aximo de 31 bits, para dupla sincroniza¸c˜ao, os pacotes de dados possuem 480 bits e transportam o seguinte pangrama: (The Quick Brown Fox Jumps Over the Lazy Dog 0123456789!@#$). O m´etodo explora a diversidade temporal do canal, transmitindo a mesma sequˆencia diversas vezes para aumentar o ganho de processamento do sinal e implementar a corre¸c˜ao de erros atrav´es da soma coerente dos sinais. A resposta impulsiva do canal ´e estimada pela transformada r´apida de Hadamard, e a equaliza¸c˜ao do sinal ´e feita por um filtro de Wiener. A remo¸c˜ao da interferˆencia causada pelo sinal de treinamento ´e realizada pelo m´etodo “hyperslice cancellation by coordinate zeroing (HCC0)”, e a seguir a mensagem ´e decodificada. Resultados obtidos a partir de um experimento em ´aguas rasas, utilizando uma fonte e um ´único hidrofone, apresentaram taxas de erro de bit menores que 10−2, para relações sinal/ruído inferiores a −8 dB. A ressurgência costeira ´e um fenómeno oceanográfico dinâmico que modifica, profundamente, a estratificação de temperatura do oceano, influenciando diretamente na propagação acústica. Por outro lado, os crescentes n´níveis de ruído antropogénico não apenas reduzem o desempenho dos sistema de comunicação, corrompendo a informação transmitida, mas tamb´em afetam a vida marinha. Para compreender os efeitos da ressurgˆencia costeira sobre as comunica¸c˜oes com baixa rela¸c˜ao sinal/ru´ıdo, um estudo analisa os dados do experimento BioCom’19, realizado nas proximidades da Ilha do Cabo Frio, Rio de Janeiro (Brasil). As respostas impulsivas do canal e a propaga¸c˜ao ac´ustica, para diferentes perfis de velocidade do som, foram estimadas usando o modelo de propaga¸c˜ao ac´ustica “Monterey-Miami Parabolic Equation model (MMPE)”. Al´em disso, o desempenho do sistema de comunica¸c˜oes foi correlacionado com os perfis de temperatura durante o experimento. Os resultados obtidos indicam uma significativa redu¸c˜ao da energia ac´ustica nos receptores durante a ressurgˆencia, degradando o desempenho do sistema. A coerˆencia temporal e espacial dos sinais de baixa potˆencia transmitidos no experimento BioCom’19 foi estimada, e um crit´erio para combina¸c˜ao dos sinais, provenientes dos m´ultiplos hidrofones, foi proposto. Utilizando dados de um arranjo piramidal e um arranjo vertical linear, de 4 hidrofones cada, a coerˆencia foi estimada antes e depois do filtro de Wiener para mostrar o impacto do multicaminhamento sobre a taxa de erro de bit. Os resultados mostram que a coˆerencia temporal pode ser utilizada como crit´erio para combinar sinais consecutivos em um mesmo canal, enquanto a diversidade espacial permite a combina¸c˜ao de m´ultiplos canais do arranjo de sensores. Sequˆencias cuja coerˆencia temporal esteja acima de um limite pr´e-definido s˜ao somadas. A coerˆencia espacial entre canais foi estimada e comparada em termos da taxa de erro de bit. Para diferentes taxas de transmiss˜ao, as taxas de erro de bit est˜ao em concordˆancia com a evoluc˜ao da coerˆencia espacial. Quanto mais elevada a coerˆencia, melhor o desempenho e menor a taxa de erro de bit. Um duplo filtro de Wiener para melhorar a equaliza¸c˜ao dos sinais de baixa potˆencia, durante a ressurgˆencia, tambem foi proposto. Utilizando dados dos 4 hidrofones de um arranjo piramidal, as respostas impulsivas foram estimadas para observar a variabilidade das condi¸c˜oes de propaga¸c˜ao. Em uma condi¸c˜ao de perfil de temperatura isot´ermico, as respostas impulsivas apresentaram multicaminhamento curto, com chegadas mais fortes nos receptores. `A medida que a ressurgˆencia ocorria, foram observadas quedas abruptas de temperatura superiores a 10◦C, na posi¸c˜ao dos hidrofones, acarretando uma forte refra¸c˜ao da onda sonora para o fundo marinho. Em consequˆencia, sinais mais fracos foram observados nos hidrofones. Os resultados obtidos com dados do BioCom’19 mostram que, para uma rela¸c˜ao sinal/ru´ıdo variando entre −3.9 e 7.3 dB, o duplo filtro de Wiener forneceu um ganho do erro m´edio quadr´atico de at´e 2.8 dB, comparado com o filtro de Wiener simples. As t´ecnicas de tempo reverso passivo (TRP) tem sido amplamente empregadas nas comunica¸c˜oes submarinas. Por´em, as r´apidas altera¸c˜oes das condi¸c˜oes de propaga¸c˜ao em canais submarinos variantes no tempo, durante as transmiss˜oes da sequˆencia de treinamento e da mensagem, degradam o desempenho das t´ecnicas TRP de equaliza¸c˜ao. Assim, esse trabalho prop˜oe um m´etodo de TRP utilizando treinamento superposto, para sistemas com um ou m´ultiplos sensores. O m´etodo proposto utiliza uma sequˆencia de treinamento, com o efeito Doppler corrigido, para estimar o canal e realizar o TRP. O m´etodo compara 3 differentes estrat´egias para melhorar a performance do sistema de comunica¸c˜ao: a diversidade temporal devido aos sinais idˆenticos transmitidos continuamente, a diversidade espacial devido aos 2 arranjos de hidrofones, piramidal e linear, com 4 hidrofones cada um, al´em da combina¸c˜ao dos 2 arranjos (8 hidrofones). Neste m´etodo, a t´ecnica de TRP com treinamento superposto minimiza o multicaminhamento e realiza a corre¸c˜ao de erros atrav´es da soma coerente dos diferentes canais. A interferˆencia intersimb´olica residual ´e removida pelo filtro de Wiener. Resultados obtidos com dados do experimento BioCom’19 mostram que o m´etodo proposto pode fornecer um ganho do erro médio quadrático de até 1.62 dB para canais independentes, e 3.13 dB, para canais combinados, comparativamente ao m´etodo sem o TRP, usando apenas o filtro de Wiener. Neste contexto, o m´etodo de TRP utilizando treinamento superposto alcan¸cou taxas de erro de bit < 10−2 para uma rela¸c˜ao sinal ru´ıdo, na banda de transmiss˜ao, variando entre −5 a +6 dB. Focado em comunica¸c˜oes com baixa probabilidade de detec¸c˜ao para pequenos ve´ıculos submarinos, este trabalho tamb´em apresenta um estudo sobre a combina¸c˜ao dos canais de press˜ao e velocidade de part´ıcula dos sensores vetoriais. Os sensores vetoriais possuem pequenas dimens˜oes, adequadas `a utilizac˜ao em ve´ıculos autˆonomos, e permitem obter um ganho de diversidade para as comunica¸c˜oes BPD. Para testar o m´etodo de treinamento superposto com o tempo reverso passivo utilizando sensores vetoriais, um experimento foi realizado, em ´aguas rasas, na costa do Algarve/Portugal. Para reduzir a rela¸c˜ao sinal/ru´ıdo para uma faixa de 0 a −10 dB, foi adicionado ru´ıdo gravado no experimento. Os resultados experimentais indicam que a combina¸c˜ao dos canais podem fornecer um ganho da rela¸c˜ao sinal/ru´ıdo e do erro m´edio quadr´atico de at´e 9.4 e 3.1 dB, respectivamente, comparados com os resultados do sensor de press˜ao. Portanto, as principais contribui¸c˜oes dessa tese s˜ao (i) a proposta do m´etodo de treinamento superposto para comunica¸c˜oes com baixa probabilidade de detec¸c˜ao, (ii) a compreens ˜ao dos efeitos da ressurgˆencia costeira sobre as comunica¸c˜oes, e seus impactos sobre a coerˆencia temporal e espacial, (iii) o m´etodo de treinamento superposto em conjunto com o tempo reverso passivo para lidar com a varia¸c˜ao do canal entre o tempo de recep¸c˜ao do sinal de treinamento e da mensagem, e (iv) a combina¸c˜ao dos m´ultiplos canais dos sensores vetoriais para comunica¸c˜oes BPD. Dessa forma, uma melhor compreens˜ao do canal submarino e a utiliza¸c˜ao dos m´etodos propostos combinados com sensores do estado da arte, como os sensores vetoriais, se configura como um avan¸co neste campo do conhecimento, permitindo aumentar a robustez do sistema BPD, bem como reduzir a probabilidade de detec¸c˜ao, mantendo a ocultação das comunicações.I am also grateful for the sponsorship provided by the Brazilian Navy through the Postgraduate Study Abroad Program, Grant No. Port.227/MB/2019