The Ecce and Logen Partial Evaluators and their Web Interfaces

We present Ecce and Logen, two partial evaluators for Prolog using the online and offline approach respectively. We briefly present the foundations of these tools and discuss various applications. We also present new implementations of these tools, carried out in Ciao Prolog. In addition to a command-line interface new user-friendly web interfaces were developed. These enable non-expert users to specialise logic programs using a web browser, without the need for a local installation

Static and dynamic semantics of NoSQL languages

We present a calculus for processing semistructured data that spans differences of application area among several novel query languages, broadly categorized as "NoSQL". This calculus lets users define their own operators, capturing a wider range of data processing capabilities, whilst providing a typing precision so far typical only of primitive hard-coded operators. The type inference algorithm is based on semantic type checking, resulting in type information that is both precise, and flexible enough to handle structured and semistructured data. We illustrate the use of this calculus by encoding a large fragment of Jaql, including operations and iterators over JSON, embedded SQL expressions, and co-grouping, and show how the encoding directly yields a typing discipline for Jaql as it is, namely without the addition of any type definition or type annotation in the code

A Type Language for Calendars

Time and calendars play an important role in databases, on the Semantic Web, as well as in mobile computing. Temporal data and calendars require (specific) modeling and processing tools. CaTTS is a type language for calendar definitions using which one can model and process temporal and calendric data. CaTTS is based on a "theory reasoning" approach for efficiency reasons. This article addresses type checking temporal and calendric data and constraints. A thesis underlying CaTTS is that types and type checking are as useful and desirable with calendric data types as with other data types. Types enable (meaningful) annotation of data. Type checking enhances efficiency and consistency of programming and modeling languages like database and Web query languages

Using Links to prototype a Database Wiki

Both relational databases and wikis have strengths that make them attractive for use in collaborative applications. In the last decade, database-backed Web applications have been used extensively to develop valuable shared biological references called curated databases. Databases offer many advantages such as scalability, query optimization and concurrency control, but are not easy to use and lack other features needed for collaboration. Wikis have become very popular for early-stage biocuration projects because they are easy to use, encourage sharing and collaboration, and provide built-in support for archiving, history-tracking and annotation. However, curation projects often outgrow the limited capabilities of wikis for structuring and efficiently querying data at scale, necessitating a painful phase transition to a database-backed Web application. We perceive a need for a new class of general-purpose system, which we call a Database Wiki, that combines flexible wiki-like support for collaboration with robust database-like capabilities for structuring and querying data. This paper presents DBWiki, a design prototype for such a system written in the Web programming language Links. We present the architecture, typical use, and wiki markup language design for DBWiki and discuss features of Links that provided unique advantages for rapid Web/database application prototyping

Supervising Offline Partial Evaluation of Logic Programs using Online Techniques

A major impediment for more widespread use of offline partial evaluation is the difficulty of obtaining and maintaining annotations for larger, realistic programs. Existing automatic binding-time analyses still only have limited applicability and annotations often have to be created or improved and maintained by hand, leading to errors. We present a technique to help overcome this problem by using online control techniques which supervise the specialisation process in order to help the development and maintenance of correct annotations by identifying errors. We discuss an implementation in the Logen system and show on a series of examples that this approach is effective: very few false alarms were raised while infinite loops were detected quickly. We also present the integration of this technique into a web interface, which highlights problematic annotations directly in the source code. A method to automatically fix incorrect annotations is presented, allowing the approach to be also used as a pragmatic binding time analysis. Finally we show how our method can be used for efficiently locating built-in errors in Prolog source code

Hierarchical Event Descriptors (HED): Semi-Structured Tagging for Real-World Events in Large-Scale EEG.

Real-world brain imaging by EEG requires accurate annotation of complex subject-environment interactions in event-rich tasks and paradigms. This paper describes the evolution of the Hierarchical Event Descriptor (HED) system for systematically describing both laboratory and real-world events. HED version 2, first described here, provides the semantic capability of describing a variety of subject and environmental states. HED descriptions can include stimulus presentation events on screen or in virtual worlds, experimental or spontaneous events occurring in the real world environment, and events experienced via one or multiple sensory modalities. Furthermore, HED 2 can distinguish between the mere presence of an object and its actual (or putative) perception by a subject. Although the HED framework has implicit ontological and linked data representations, the user-interface for HED annotation is more intuitive than traditional ontological annotation. We believe that hiding the formal representations allows for a more user-friendly interface, making consistent, detailed tagging of experimental, and real-world events possible for research users. HED is extensible while retaining the advantages of having an enforced common core vocabulary. We have developed a collection of tools to support HED tag assignment and validation; these are available at hedtags.org. A plug-in for EEGLAB (sccn.ucsd.edu/eeglab), CTAGGER, is also available to speed the process of tagging existing studies