VADA: A transformation-based system for variable dependence analysis

Variable dependence is an analysis problem in which the aim is to determine the set of input variables that can affect the values stored in a chosen set of intermediate program variables. This paper shows the relationship between the variable dependence analysis problem and slicing and describes VADA, a system that implements variable dependence analysis. In order to cover the full range of C constructs and features, a transformation to a core language is employed Thus, the full analysis is required only for the core language, which is relatively simple. This reduces the overall effort required for dependency analysis. The transformations used need preserve only the variable dependence relation, and therefore need not be meaning preserving in the traditional sense. The paper describes how this relaxed meaning further simplifies the transformation phase of the approach. Finally, the results of an empirical study into the performance of the system are presented

SWISH: SWI-Prolog for Sharing

Recently, we see a new type of interfaces for programmers based on web technology. For example, JSFiddle, IPython Notebook and R-studio. Web technology enables cloud-based solutions, embedding in tutorial web pages, atractive rendering of results, web-scale cooperative development, etc. This article describes SWISH, a web front-end for Prolog. A public website exposes SWI-Prolog using SWISH, which is used to run small Prolog programs for demonstration, experimentation and education. We connected SWISH to the ClioPatria semantic web toolkit, where it allows for collaborative development of programs and queries related to a dataset as well as performing maintenance tasks on the running server and we embedded SWISH in the Learn Prolog Now! online Prolog book.Comment: International Workshop on User-Oriented Logic Programming (IULP 2015), co-located with the 31st International Conference on Logic Programming (ICLP 2015), Proceedings of the International Workshop on User-Oriented Logic Programming (IULP 2015), Editors: Stefan Ellmauthaler and Claudia Schulz, pages 99-113, August 201

CLP-based protein fragment assembly

The paper investigates a novel approach, based on Constraint Logic Programming (CLP), to predict the 3D conformation of a protein via fragments assembly. The fragments are extracted by a preprocessor-also developed for this work- from a database of known protein structures that clusters and classifies the fragments according to similarity and frequency. The problem of assembling fragments into a complete conformation is mapped to a constraint solving problem and solved using CLP. The constraint-based model uses a medium discretization degree Ca-side chain centroid protein model that offers efficiency and a good approximation for space filling. The approach adapts existing energy models to the protein representation used and applies a large neighboring search strategy. The results shows the feasibility and efficiency of the method. The declarative nature of the solution allows to include future extensions, e.g., different size fragments for better accuracy.Comment: special issue dedicated to ICLP 201

Toward an automaton Constraint for Local Search

We explore the idea of using finite automata to implement new constraints for local search (this is already a successful technique in constraint-based global search). We show how it is possible to maintain incrementally the violations of a constraint and its decision variables from an automaton that describes a ground checker for that constraint. We establish the practicality of our approach idea on real-life personnel rostering problems, and show that it is competitive with the approach of [Pralong, 2007]

ConSIT: A conditioned program slicer

Conditioned slicing is a powerful generalisation of static and dynamic slicing which has applications to many problems in software maintenance and evolution, including reuse, reengineering and program comprehension. However there has been relatively little work on the implementation of conditioned slicing. Algorithms for implementing conditioned slicing necessarily involve reasoning about the values of program predicates in certain sets of states derived from the conditioned slicing criterion, making implementation particularly demanding. The paper introduces ConSIT, a conditioned slicing system which is based upon conventional static slicing, symbolic execution and theorem proving. ConSIT is the first fully automated implementation of conditioned slicing. An implementation of ConSIT is available for experimentation at &http://www.mcs.gold.ac.uk/tilde/~mas01sd/consit.htm

TOR: modular search with hookable disjunction

Horn Clause Programs have a natural exhaustive depth-first procedural semantics. However, for many programs this semantics is ineffective. In order to compute useful solutions, one needs the ability to modify the search method that explores the alternative execution branches. Tor, a well-defined hook into Prolog disjunction, provides this ability. It is light-weight thanks to its library approach and efficient because it is based on program transformation. Tor is general enough to mimic search-modifying predicates like ECLiPSe's search/6. Moreover, Tor supports modular composition of search methods and other hooks. The Tor library is already provided and used as an add-on to SWI-Prolog.publisher: Elsevier articletitle: Tor: Modular search with hookable disjunction journaltitle: Science of Computer Programming articlelink: http://dx.doi.org/10.1016/j.scico.2013.05.008 content_type: article copyright: Copyright © 2013 Elsevier B.V. All rights reserved.status: publishe