Convergence Stability of Depth-Depth-Matching-Based Steepest Descent Method in Simulated Liver Surgery

We recently established that our digital potential function was globally stable at the point where a virtual liver coincided with its real counterpart. In particular, because three rotational degrees of freedom are frequently used in a surgical operation on a real liver, stability of the potential function concerning three rotational degrees of freedom was carefully verified in the laboratory, using fluorescent lamps and sunlight. We achieved the same stability for several simulated liver operations using a 3D printed viscoelastic liver in a surgical operating room equipped with two light-emitting diode shadowless lamps. As a result, with increasing number of lamps, stability of our depth-depth matching in the steepest descendent algorithm improved because the lamps did not emit an infrared spectrum such as the one emitted by our depth camera. Furthermore, the slower the angular velocity in a surgical sequence, the more overall stability improved

Shear-promoted drug encapsulation into red blood cells: a CFD model and μ-PIV analysis

The present work focuses on the main parameters that influence shear-promoted encapsulation of drugs into erythrocytes. A CFD model was built to investigate the fluid dynamics of a suspension of particles flowing in a commercial micro channel. Micro Particle Image Velocimetry (μ-PIV) allowed to take into account for the real properties of the red blood cell (RBC), thus having a deeper understanding of the process. Coupling these results with an analytical diffusion model, suitable working conditions were defined for different values of haematocrit

Gesture Recognition for Enhancing Human Computer Interaction

Gesture recognition is critical in human-computer communication. As observed, a plethora of current technological developments are in the works, including biometric authentication, which we see all the time in our smartphones. Hand gesture focus, a frequent human-computer interface in which we manage our devices by presenting our hands in front of a webcam, can benefit people of different backgrounds. Some of the efforts in human-computer interface include voice assistance and virtual mouse implementation with voice commands, fingertip recognition and hand motion tracking based on an image in a live video. Human Computer Interaction (HCI), particularly vision-based gesture and object recognition, is becoming increasingly important. Hence, we focused to design and develop a system for monitoring fingers using extreme learning-based hand gesture recognition techniques. Extreme learning helps in quickly interpreting the hand gestures with improved accuracy which would be a highly useful in the domains like healthcare, financial transactions and global busines

Projection-based Spatial Augmented Reality for Interactive Visual Guidance in Surgery

Ph.DDOCTOR OF PHILOSOPH

Personalised Procedures for Thoracic Radiotherapy

This thesis presents the investigation, development, and estimation of two personalised procedures for thoracic cancer therapy in Shenzhen, China and two projects were carried out: (1) respiratory motion management of a lung tumour, and (2) the application of a three-dimensional (3D) printing technique for postmastectomy irradiation. For the first project, all subjects attended sessions of free-breathing (FB) and personalised vocal coaching (VC) for respiratory regulation. Thoracic and abdominal breathing signals were extracted from the subjects’ surface area then estimated as kernel density estimation (KDE) for motion visualisation. The mutual information (MI) and correlation coefficient (CC) calculated from KDEs indicate the variation in the relationship between the two signals. From the 1D signal, through VC, the variation of cycle time and the signal value of end-of-exhale/inhale increased in the patient group but decreased in volunteers. Mixed results were presented on KDE and MI. Compared with FB, VC improves movement consistency between the two signals in eight of eleven subjects by increasing MI. The fixed instruction method showed no improvement for day-to-day variation, while the daily generated instruction enhanced the respiratory regularity in three of five volunteers. VC addresses the variation of the single signal, while the outcome of the two signals, thoracic and abdominal signals, requires further interpretation. The second project aims to address both the enhancement of the skin dose and avoidance of hotspots of critical organs, focusing on improving irradiative treatment for post-mastectomy patients. A 3D-printed bolus was presented as a solution for the air gap between the bolus and skin. The results showed no evidence of significant skin dose enhancement with the printed bolus. Additionally, an air gap larger than 5 mm was evident in all patients. Until a solution for complete bolus adhesion is found, this customised bolus is not suitable for clinical use

Advances in navigation and intraoperative imaging for intraoperative electron radiotherapy

Mención Internacional en el título de doctorEsta tesis se enmarca dentro del campo de la radioterapia y trata específicamente sobre la radioterapia intraoperatoria (RIO) con electrones. Esta técnica combina la resección quirúrgica de un tumor y la radiación terapéutica directamente aplicada sobre el lecho tumoral post-resección o sobre el tumor no resecado. El haz de electrones de alta energía es colimado y conducido por un aplicador específico acoplado a un acelerador lineal. La planificación de la RIO con electrones es compleja debido a las modificaciones geométricas y anatómicas producidas por la retracción de estructuras y la eliminación de tejidos cancerosos durante la cirugía. Actualmente, no se dispone del escenario real en este tipo de tratamientos (por ejemplo, la posición/orientación del aplicador respecto a la anatomía del paciente o las irregularidades en la superficie irradiada), sólo de una estimación grosso modo del tratamiento real administrado al paciente. Las imágenes intraoperatorias del escenario real durante el tratamiento (concretamente imágenes de tomografía axial computarizada [TAC]) serían útiles no sólo para la planificación intraoperatoria, sino también para registrar y evaluar el tratamiento administrado al paciente. Esta información es esencial en estudios prospectivos. En esta tesis se evaluó en primer lugar la viabilidad de un sistema de seguimiento óptico de varias cámaras para obtener la posición/orientación del aplicador en los escenarios de RIO con electrones. Los resultados mostraron un error de posición del aplicador inferior a 2 mm (error medio del centro del bisel) y un error de orientación menor de 2º (error medio del eje del bisel y del eje longitudinal del aplicador). Estos valores están dentro del rango propuesto por el Grupo de Trabajo 147 (encargo del Comité de Terapia y del Subcomité para la Mejora de la Garantía de Calidad y Resultados de la Asociación Americana de Físicos en Medicina [AAPM] para estudiar en radioterapia externa la exactitud de la localización con métodos no radiográficos, como los sistemas infrarrojos). Una limitación importante de la solución propuesta es que el aplicador se superpone a la imagen preoperatoria del paciente. Una imagen intraoperatoria proporcionaría información anatómica actualizada y permitiría estimar la distribución tridimensional de la dosis. El segundo estudio específico de esta tesis evaluó la viabilidad de adquirir con un TAC simulador imágenes TAC intraoperatorias de escenarios reales de RIO con electrones. No hubo complicaciones en la fase de transporte del paciente utilizando la camilla y su acople para el transporte, o con la adquisición de imágenes TAC intraoperatorias en la sala del TAC simulador. Los estudios intraoperatorios adquiridos se utilizaron para evaluar la mejora obtenida en la estimación de la distribución de dosis en comparación con la obtenida a partir de imágenes TAC preoperatorias, identificando el factor dominante en esas estimaciones (la región de aire y las irregularidades en la superficie, no las heterogeneidades de los tejidos). Por último, el tercer estudio específico se centró en la evaluación de varias tecnologías TAC de kilovoltaje, aparte del TAC simulador, para adquirir imágenes intraoperatorias con las que estimar la distribución de la dosis en RIO con electrones. Estos dispositivos serían necesarios en el caso de disponer de aceleradores lineales portátiles en el quirófano ya que no se aprobaría mover al paciente a la sala del TAC simulador. Los resultados con un maniquí abdominal mostraron que un TAC portátil (BodyTom) e incluso un acelerador lineal con un TAC de haz de cónico (TrueBeam) serían adecuados para este propósito.This thesis is framed within the field of radiotherapy, specifically intraoperative electron radiotherapy (IOERT). This technique combines surgical resection of a tumour and therapeutic radiation directly applied to a post-resection tumour bed or to an unresected tumour. The high-energy electron beam is collimated and conducted by a specific applicator docked to a linear accelerator (LINAC). Dosimetry planning for IOERT is challenging owing to the geometrical and anatomical modifications produced by the retraction of structures and removal of cancerous tissues during the surgery. No data of the actual IOERT 3D scenario is available (for example, the applicator pose in relation to the patient’s anatomy or the irregularities in the irradiated surface) and consequently only a rough approximation of the actual IOERT treatment administered to the patient can be estimated. Intraoperative computed tomography (CT) images of the actual scenario during the treatment would be useful not only for intraoperative planning but also for registering and evaluating the treatment administered to the patient. This information is essential for prospective trials. In this thesis, the feasibility of using a multi-camera optical tracking system to obtain the applicator pose in IOERT scenarios was firstly assessed. Results showed that the accuracy of the applicator pose was below 2 mm in position (mean error of the bevel centre) and 2º in orientation (mean error of the bevel axis and the longitudinal axis), which are within the acceptable range proposed in the recommendation of Task Group 147 (commissioned by the Therapy Committee and the Quality Assurance and Outcomes Improvement Subcommittee of the American Association of Physicists in Medicine [AAPM] to study the localization accuracy with non-radiographic methods such as infrared systems in external beam radiation therapy). An important limitation of this solution is that the actual pose of applicator is superimposed on a patient’s preoperative image. An intraoperative image would provide updated anatomical information and would allow estimating the 3D dose distribution. The second specific study of this thesis evaluated the feasibility of acquiring intraoperative CT images with a CT simulator in real IOERT scenarios. There were no complications in the whole procedure related to the transport step using the subtable and its stretcher or the acquisition of intraoperative CT images in the CT simulator room. The acquired intraoperative studies were used to evaluate the improvement achieved in the dose distribution estimation when compared to that obtained from preoperative CT images, identifying the dominant factor in those estimations (air gap and the surface irregularities, not tissue heterogeneities). Finally, the last specific study focused on assessing several kilovoltage (kV) CT technologies other than CT simulators to acquire intraoperative images for estimating IOERT dose distribution. That would be necessary when a mobile electron LINAC was available in the operating room as transferring the patient to the CT simulator room could not be approved. Our results with an abdominal phantom revealed that a portable CT (BodyTom) and even a LINAC with on-board kV cone-beam CT (TrueBeam) would be suitable for this purpose.Programa Oficial de Doctorado en Multimedia y ComunicacionesPresidente: Joaquín López Herráiz.- Secretario: María Arrate Muñoz Barrutia.- Vocal: Óscar Acosta Tamay

Dual-camera infrared guidance for computed tomography biopsy procedures

A CT-guided biopsy is a specialised surgical procedure whereby a needle is used to withdraw tissue or fluid specimen from a lesion of interest. The needle is guided while being viewed by a clinician on a computed tomography (CT) scan. CT guided biopsies invariably expose patients and operators to high dosage of radiation and are lengthy procedures where the lack of spatial referencing while guiding the needle along the required entry path are some of the diffculties currently encountered. This research focuses on addressing two of the challenges clinicians currently face when performing CT-guided biopsy procedures. The first challenge is the lack of spatial referencing during a biopsy procedure, with the requirement for improved accuracy and reduction in the number of repeated scans. In order to achieve this an infrared navigation system was designed and implemented where an existing approach was subsequently extended to help guide the clinician in advancing the biopsy needle. This extended algorithm computed a scaled estimate of the needle endpoint and assists with navigating the biopsy needle through a dedicated and custom built graphical user interface. The second challenge was to design and implement a training environment where clinicians could practice different entry angles and scenarios. A prototype training module was designed and built to provide simulated biopsy procedures in order to help increase spatial referencing. Various experiments and different scenarios were designed and tested to demonstrate the correctness of the algorithm and provide real-life simulated scenarios where the operators had a chance to practice different entry angles and familiarise themselves with the equipment. A comprehensive survey was also undertaken to investigate the advantages and disadvantages of the system

Contextual game design: from interface development to human activity recognition

A dissertação focasse nos seguintes pontos: Criação de diferentes interfaces usando o sensor Kinect, para reablitação de pacientes com cancro de mama. E, reconhecimento de atividade humana (problema derivado aquando a criação das interfaces)

Ultrasound imaging operation capture and image analysis for speckle noise reduction and detection of shadows

Ultrasound is becoming increasingly important in medicine, both as a diagnostic tool and as a therapeutic modality. At present, experienced sonographers observe trainees as they generate hundreds of images, constantly providing them feedback and eventually deciding if they have the appropriate skills and knowledge to perform ultrasound independently. This research seeks to advance towards developing an automated system capable of assessing the motion of an ultrasound transducer and differentiate between a novice, an intermediate and an expert sonographer. The research in this thesis synchronizes the ultrasound images with three depth sensors (Microsoft Kinect) placed on the top, left and right side of the patient to ensure the visibility of the ultrasound probe. Videos obtained from the three categories of sonographers are manually labeled and compared using Studiocode Development Environment to complete the items on the medical form checklist. Next, this thesis investigates and applies well known techniques used to smooth and suppress speckle noise in ultrasound images by using quality metrics to test their performance and show the benefits each one can contribute. Finally, this thesis investigates the problem of shadow detection in ultrasound imaging and proposes to detect shadows automatically with an ultrasound confidence map using a random walks algorithm. The results show that the proposed algorithm achieves an accuracy of automatic detection of up to 85%, based on both the expert and manual segmentation