15,400 research outputs found

    Self-Organized Vortices of Circling Self-Propelled Particles and Curved Active Flagella

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    Self-propelled point-like particles move along circular trajectories when their translocation velocity is constant and the angular velocity related to their orientation vector is also constant. We investigate the collective behavior of ensembles of such circle swimmers by Brownian dynamics simulations. If the particles interact via a "velocity-trajectory coordination" rule within neighboring particles, a self-organized vortex pattern emerges. This vortex pattern is characterized by its particle-density correlation function GρG_\rho, the density correlation function GcG_c of trajectory centers, and an order parameter SS representing the degree of the aggregation of the particles. Here, we systematically vary the system parameters, such as the particle density and the interaction range, in order to reveal the transition of the system from a light-vortex-dominated to heavy-vortex-dominated state, where vortices contain mainly a single and many self-propelled particles, respectively. We also study a semi-dilute solution of curved, sinusoidal-beating flagella, as an example of circling self-propelled particles with explicit propulsion mechanism and excluded-volume interactions. Our simulation results are compared with previous experimental results for the vortices in sea-urchin sperm solutions near a wall. The properties of the vortices in simulations and experiments are found to agree quantitatively.Comment: 14 pages, 15 figure

    Computational studies of biomembrane systems: Theoretical considerations, simulation models, and applications

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    This chapter summarizes several approaches combining theory, simulation and experiment that aim for a better understanding of phenomena in lipid bilayers and membrane protein systems, covering topics such as lipid rafts, membrane mediated interactions, attraction between transmembrane proteins, and aggregation in biomembranes leading to large superstructures such as the light harvesting complex of green plants. After a general overview of theoretical considerations and continuum theory of lipid membranes we introduce different options for simulations of biomembrane systems, addressing questions such as: What can be learned from generic models? When is it expedient to go beyond them? And what are the merits and challenges for systematic coarse graining and quasi-atomistic coarse grained models that ensure a certain chemical specificity

    Theoretical study of stimulated and spontaneous Hawking effects from an acoustic black hole in a hydrodynamically flowing fluid of light

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    We propose an experiment to detect and characterize the analog Hawking radiation in an analog model of gravity consisting of a flowing exciton-polariton condensate. Under a suitably designed coherent pump configuration, the condensate features an acoustic event horizon for sound waves that at the semiclassical level is equivalent to an astrophysical black hole horizon. We show that a continuous-wave pump-and-probe spectroscopy experiment allows to measure the analog Hawking temperature from the dependence of the stimulated Hawking effect on the pump-probe detuning. We anticipate the appearance of an emergent resonant cavity for sound waves between the pump beam and the horizon, which results in marked oscillations on top of an overall exponential frequency dependence. We finally analyze the spatial correlation function of density fluctuations and identify the hallmark features of the correlated pairs of Bogoliubov excitations created by the spontaneous Hawking process, as well as novel signatures characterizing the emergent cavity

    Cooperation of Sperm in Two Dimensions: Synchronization, Attraction and Aggregation through Hydrodynamic Interactions

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    Sperm swimming at low Reynolds number have strong hydrodynamic interactions when their concentration is high in vivo or near substrates in vitro. The beating tails not only propel the sperm through a fluid, but also create flow fields through which sperm interact with each other. We study the hydrodynamic interaction and cooperation of sperm embedded in a two-dimensional fluid by using a particle-based mesoscopic simulation method, multi-particle collision dynamics (MPC). We analyze the sperm behavior by investigating the relationship between the beating-phase difference and the relative sperm position, as well as the energy consumption. Two effects of hydrodynamic interaction are found, synchronization and attraction. With these hydrodynamic effects, a multi-sperm system shows swarm behavior with a power-law dependence of the average cluster size on the width of the distribution of beating frequencies

    Rods Near Curved Surfaces and in Curved Boxes

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    We consider an ideal gas of infinitely rigid rods near a perfectly repulsive wall, and show that the interfacial tension of a surface with rods on one side is lower when the surface bends towards the rods. Surprisingly we find that rods on both sides of surfaces also lower the energy when the surface bends. We compute the partition functions of rods confined to spherical and cylindrical open shells, and conclude that spherical shells repel rods, whereas cylindrical shells (for thickness of the shell on the order of the rod-length) attract them. The role of flexibility is investigated by considering chains composed of two rigid segments.Comment: 39 pages including figures and tables. 12 eps figures. LaTeX with REVTe
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