Mapping Species Composition of Forests and Tree Plantations in Northeastern Costa Rica with an Integration of Hyperspectral and Multitemporal Landsat Imagery

An efficient means to map tree plantations is needed to detect tropical land use change and evaluate reforestation projects. To analyze recent tree plantation expansion in northeastern Costa Rica, we examined the potential of combining moderate-resolution hyperspectral imagery (2005 HyMap mosaic) with multitemporal, multispectral data (Landsat) to accurately classify (1) general forest types and (2) tree plantations by species composition. Following a linear discriminant analysis to reduce data dimensionality, we compared four Random Forest classification models: hyperspectral data (HD) alone; HD plus interannual spectral metrics; HD plus a multitemporal forest regrowth classification; and all three models combined. The fourth, combined model achieved overall accuracy of 88.5%. Adding multitemporal data significantly improved classification accuracy (p less than 0.0001) of all forest types, although the effect on tree plantation accuracy was modest. The hyperspectral data alone classified six species of tree plantations with 75% to 93% producer's accuracy; adding multitemporal spectral data increased accuracy only for two species with dense canopies. Non-native tree species had higher classification accuracy overall and made up the majority of tree plantations in this landscape. Our results indicate that combining occasionally acquired hyperspectral data with widely available multitemporal satellite imagery enhances mapping and monitoring of reforestation in tropical landscapes

A quantitative assessment of the impacts of water status and chemical bioassays on structural attributes of Eucalyptus clones and plantation soil nitrogen using hyperspectral data.

Ph.D. University of KwaZulu-Natal, Durban 2012.Abstract available in PDF file

Going hyperspectral: the 'unseen' captured?

All objects, name them soil, water, trees, vegetation, structures, metals, paints or fabrics, create a unique spectral fingerprint. A sensor determines these fingerprints by measuring reflected light, most of which registers in wavelengths, or bands, invisible to humans. This is what the crime scene investigation (CSI) television programs have popularized how DNA or fingerprints can be used to solve crimes. Similarly, forest CSI of “seeing” the trees in the deep high mountain tropical forest is now a major focus in the air and spaceborne hyperspectral sensing technology and in other different applications such as agriculture, environment, geology, transportation, security, and several others. The availability of sub-meter resolution colour imagery from satellites coupled with internet based services like Google Earth and Microsoft Virtual Earth have resulted in an enormous interest in remote sensing among the general public. The ability to see one’s home or familiar landmarks in an image taken from hundreds of kilometers above the earth elicits wonder and awe. Deciding where, when, what and how to sense or measure the DNA of individual trees from the air or space is a crucial question in the sustainable development and management of our Malaysian tropical forest ecosystems. However, to monitor, quantify, map and understand the content and nature of our forest, one would ideally like to monitor it everywhere and all the time too. This is impossible, and consequently, forest engineers must select relatively very high to high near to real time resolution sensors with the ability to transcend boundaries, capabilities, features and interfacing realms for such measurement. The dynamic interplay of these elements is precisely coordinated by signaling networks that orchestrate their interactions. High-throughput experimental and analytical techniques now provide forest engineers with incredibly rich and potentially revealing datasets from both air and spaceborne hyperspectral sensors (also known as imaging spectrometers). However, it is impossible to exhaustively explore the full experimental and operational hyperspectral sensors available in the market out there and so forest engineers must judiciously choose which one is the best to perform and fulfill their project objectives and missions. The complexity and high-dimensionality of these systems makes it incredibly difficult for forest engineers and other users alone to manage and optimize sensing processes. In order to add or derive value from a hyperspectral remotely sensed image several factors such as resolution, swath, and signal to noise ratio, amongst others need to be considered. A grand challenge for the forest engineer’s scientific discovery in the 21st Century is therefore, to devise very high real-time ultra-spatial and spectral air and space borne sensors that automatically measure and adapt sensing operations in large-scale and economical systems with the unseen captured. This lecture therefore focuses on the emerging theory, origin of the hyperspectral sensors, research, practice, limitations and identifies future challenge and outlook of hyperspectral sensing systems in the quest towards a sustainable Malaysian forestry context and other different applications to capture the “unseen”. It is quite certain that advances in hyperspectral remote sensing and more sophisticated analytical methods will resolve any “unseen” issues in time with the best approach of transcending boundaries and interfacing remote sensing data with precise information from the field plots. Unfortunately, as a relatively new analytical technique, the full potential of air and spaceborne hyperspectral imaging has not yet been realized in Malaysi

The potential for using remote sensing to quantify stress in and predict yield of sugarcane (Saccharum spp. hybrid)

Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010

Modelling spatial variability of coffee (Coffea Arabica L.) crop condition with multispectral remote sensing data.

Doctor of Philosophy in Environmental Science. University of KwaZulu-Natal, Pietermaritzburg, 2017.Abstract available in PDF file

Fire

Vegetation plays a crucial role in regulating environmental conditions, including weather and climate. The amount of water and carbon dioxide in the air and the albedo of our planet are all influenced by vegetation, which in turn influences all life on Earth. Soil properties are also strongly influenced by vegetation, through biogeochemical cycles and feedback loops (see Volume 1A—Section 4). Vegetated landscapes on Earth provide habitat and energy for a rich diversity of animal species, including humans. Vegetation is also a major component of the world economy, through the global production of food, fibre, fuel, medicine, and other plantbased resources for human consumptio

The Changing Matrix: Reforestation and Connectivity in a Tropical Habitat Corridor

In the last two decades, export-oriented crops and timber and fruit plantations have joined small-scale cultivation and pasture as important causes of tropical deforestation. Widespread conversion of tropical forest to agriculture threatens to isolate protected areas, which has led to efforts to maintain functional connectivity in landscapes between protected areas. Relatively few "landscape conservation" efforts have been assessed for their effect on deforestation, but advances in remote sensing now permit detailed monitoring of tropical land uses over time, including mapping of tree crops and plantations. This dissertation evaluates the long-term impact of forest conservation and reforestation policies on tropical forests in a habitat corridor. The following chapters test the capability of remote sensing to monitor tropical conservation efforts and assess whether landscape conservation policies can maintain forest cover and connectivity in the face of rapid agricultural expansion. Costa Rica has one of the most comprehensive landscape conservation policies in the tropics: a 1996 Forest Law banned deforestation and expanded payments for environmental services (PES) to protect forests and plant trees, prioritizing designated habitat corridors between protected areas. The long-term effect of the program on land-use transitions is not well known. To take advantage of this regional policy experiment, I used a time-series of five moderate-resolution Landsat images to track land-use change from 1986 to 2011in the oldest habitat corridor, the San Juan-La Selva Biological Corridor (SJLSBC). Forest conservation policies were associated with a 40% decline in deforestation after 1996 despite a doubling in the area of cropland in the last decade. The proportion of cropland derived from mature forest dropped from 16.4% to 1.9% after 1996, while one fifth of pasture expansion continued to be derived from mature forest. These results suggest that forest conservation policies can successfully lower deforestation, and that they can be more effective with large export producers than small-scale cattle producers. Tree plantations are an important component of Costa Rican PES, but knowledge of their distribution and contribution to connectivity in the corridor region is poor. After reviewing the remote sensing literature, I employed a novel integration of hyperspectral images and a Landsat time-series to create the first regional map of tropical tree plantation species. Including multitemporal data significantly improved overall hyperspectral map accuracy to 91%; the six tree plantation species were classified with 83% mean producer's accuracy. Non-native species made up 89% of tree plantations, and they were cleared more rapidly than native tree plantations and secondary forests. I combined existing land cover maps, field behavioral experiments, and a graph connectivity model to estimate whether landscape conservation policies increased connectivity for understory insectivorous birds, a representative forest-dependent group. The field playback experiments indicated both native and exotic tree plantations with a dense shrubby understory were acceptable dispersal habitat for all species, and that birds traveled readily near secondary forest edges but rarely into forested pasture. Graph model parameters were informed by these results. For all of these bird species, functional connectivity declined by 14-21% with only a 4.9% decline in forest area over time, implying that conservation policies have not caused a net increase in functional connectivity in the SJLSBC region. Despite making up 2% of the region, tree plantations had little effect on regional connectivity because of their placement in the landscape; we demonstrate that spatially-targeted reforestation of 0.1% of the region could increase connectivity by 1.8%. Collectively, the results presented in these chapters underline the potential and limitations of landscape conservation policies and corridor plans in the tropics; combining regulations and PES can lower deforestation over the medium-term, but increased enforcement, improved monitoring with remote sensing, and targeted conservation effort is needed to combat illegal deforestation and restore functional connectivity. Given numerous new tropical corridor and PES programs and the qualified successes of landscape conservation policies in Costa Rica and other tropical countries, our approach to the analysis can be applied to monitor and evaluate connectivity across the tropics

QUANTIFYING GRASSLAND NON-PHOTOSYNTHETIC VEGETATION BIOMASS USING REMOTE SENSING DATA

Non-photosynthetic vegetation (NPV) refers to vegetation that cannot perform a photosynthetic function. NPV, including standing dead vegetation and surface plant litter, plays a vital role in maintaining ecosystem function through controlling carbon, water and nutrient uptake as well as natural fire frequency and intensity in diverse ecosystems such as forest, savannah, wetland, cropland, and grassland. Due to its ecological importance, NPV has been selected as an indicator of grassland ecosystem health by the Alberta Public Lands Administration in Canada. The ecological importance of NPV has driven considerable research on quantifying NPV biomass with remote sensing approaches in various ecosystems. Although remote images, especially hyperspectral images, have demonstrated potential for use in NPV estimation, there has not been a way to quantify NPV biomass in semiarid grasslands where NPV biomass is affected by green vegetation (PV), bare soil and biological soil crust (BSC). The purpose of this research is to find a solution to quantitatively estimate NPV biomass with remote sensing approaches in semiarid mixed grasslands. Research was conducted in Grasslands National Park (GNP), a parcel of semiarid mixed prairie grassland in southern Saskatchewan, Canada. Multispectral images, including newly operational Landsat 8 Operational Land Imager (OLI) and Sentinel-2A Multi-spectral Instrument (MSIs) images and fine Quad-pol Radarsat-2 images were used for estimating NPV biomass in early, middle, and peak growing seasons via a simple linear regression approach. The results indicate that multispectral Landsat 8 OLI and Sentinel-2A MSIs have potential to quantify NPV biomass in peak and early senescence growing seasons. Radarsat-2 can also provide a solution for NPV biomass estimation. However, the performance of Radarsat-2 images is greatly affected by incidence angle of the image acquisition. This research filled a critical gap in applying remote sensing approaches to quantify NPV biomass in grassland ecosystems. NPV biomass estimates and approaches for estimating NPV biomass will contribute to grassland ecosystem health assessment (EHA) and natural resource (i.e. land, soil, water, plant, and animal) management