22,796 research outputs found

    Reduced order modeling of fluid flows: Machine learning, Kolmogorov barrier, closure modeling, and partitioning

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    In this paper, we put forth a long short-term memory (LSTM) nudging framework for the enhancement of reduced order models (ROMs) of fluid flows utilizing noisy measurements. We build on the fact that in a realistic application, there are uncertainties in initial conditions, boundary conditions, model parameters, and/or field measurements. Moreover, conventional nonlinear ROMs based on Galerkin projection (GROMs) suffer from imperfection and solution instabilities due to the modal truncation, especially for advection-dominated flows with slow decay in the Kolmogorov width. In the presented LSTM-Nudge approach, we fuse forecasts from a combination of imperfect GROM and uncertain state estimates, with sparse Eulerian sensor measurements to provide more reliable predictions in a dynamical data assimilation framework. We illustrate the idea with the viscous Burgers problem, as a benchmark test bed with quadratic nonlinearity and Laplacian dissipation. We investigate the effects of measurements noise and state estimate uncertainty on the performance of the LSTM-Nudge behavior. We also demonstrate that it can sufficiently handle different levels of temporal and spatial measurement sparsity. This first step in our assessment of the proposed model shows that the LSTM nudging could represent a viable realtime predictive tool in emerging digital twin systems

    Coarse Brownian Dynamics for Nematic Liquid Crystals: Bifurcation Diagrams via Stochastic Simulation

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    We demonstrate how time-integration of stochastic differential equations (i.e. Brownian dynamics simulations) can be combined with continuum numerical bifurcation analysis techniques to analyze the dynamics of liquid crystalline polymers (LCPs). Sidestepping the necessity of obtaining explicit closures, the approach analyzes the (unavailable in closed form) coarse macroscopic equations, estimating the necessary quantities through appropriately initialized, short bursts of Brownian dynamics simulation. Through this approach, both stable and unstable branches of the equilibrium bifurcation diagram are obtained for the Doi model of LCPs and their coarse stability is estimated. Additional macroscopic computational tasks enabled through this approach, such as coarse projective integration and coarse stabilizing controller design, are also demonstrated

    A roadmap to integrate astrocytes into Systems Neuroscience.

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    Systems neuroscience is still mainly a neuronal field, despite the plethora of evidence supporting the fact that astrocytes modulate local neural circuits, networks, and complex behaviors. In this article, we sought to identify which types of studies are necessary to establish whether astrocytes, beyond their well-documented homeostatic and metabolic functions, perform computations implementing mathematical algorithms that sub-serve coding and higher-brain functions. First, we reviewed Systems-like studies that include astrocytes in order to identify computational operations that these cells may perform, using Ca2+ transients as their encoding language. The analysis suggests that astrocytes may carry out canonical computations in a time scale of subseconds to seconds in sensory processing, neuromodulation, brain state, memory formation, fear, and complex homeostatic reflexes. Next, we propose a list of actions to gain insight into the outstanding question of which variables are encoded by such computations. The application of statistical analyses based on machine learning, such as dimensionality reduction and decoding in the context of complex behaviors, combined with connectomics of astrocyte-neuronal circuits, is, in our view, fundamental undertakings. We also discuss technical and analytical approaches to study neuronal and astrocytic populations simultaneously, and the inclusion of astrocytes in advanced modeling of neural circuits, as well as in theories currently under exploration such as predictive coding and energy-efficient coding. Clarifying the relationship between astrocytic Ca2+ and brain coding may represent a leap forward toward novel approaches in the study of astrocytes in health and disease

    Cracks and fingers: dynamics of ductile fracture in an aqueous foam

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    Fracture of a quasi-two-dimensional aqueous foam by injection of air can occur via two distinct mechanisms, termed brittle and ductile, which are analogous to crack modes observed for crystalline atomic solids such as metals. In the present work we focus on the dynamics and morphology of the ductile process, in which no films between bubbles are broken. A network modeling approach allows detailed analysis of the foam morphology from individual bubbles to the shape of the propagating crack. This crack develops similarly to fingering instabilities in Hele–Shaw cells filled with homogeneous fluids. We show that the observed width and shape of the crack are compatible this interpretation, and that the discreteness of the bubble structure provides symmetry perturbations and limiting scales characteristic of anomalous fingering. The model thus bridges the gap between fracture of the solid foam lattice and instability growth of interfaces in a fluid system

    Synchronization and Redundancy: Implications for Robustness of Neural Learning and Decision Making

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    Learning and decision making in the brain are key processes critical to survival, and yet are processes implemented by non-ideal biological building blocks which can impose significant error. We explore quantitatively how the brain might cope with this inherent source of error by taking advantage of two ubiquitous mechanisms, redundancy and synchronization. In particular we consider a neural process whose goal is to learn a decision function by implementing a nonlinear gradient dynamics. The dynamics, however, are assumed to be corrupted by perturbations modeling the error which might be incurred due to limitations of the biology, intrinsic neuronal noise, and imperfect measurements. We show that error, and the associated uncertainty surrounding a learned solution, can be controlled in large part by trading off synchronization strength among multiple redundant neural systems against the noise amplitude. The impact of the coupling between such redundant systems is quantified by the spectrum of the network Laplacian, and we discuss the role of network topology in synchronization and in reducing the effect of noise. A range of situations in which the mechanisms we model arise in brain science are discussed, and we draw attention to experimental evidence suggesting that cortical circuits capable of implementing the computations of interest here can be found on several scales. Finally, simulations comparing theoretical bounds to the relevant empirical quantities show that the theoretical estimates we derive can be tight.Comment: Preprint, accepted for publication in Neural Computatio
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