15,195 research outputs found
Sparse Model Soups: A Recipe for Improved Pruning via Model Averaging
Neural networks can be significantly compressed by pruning, leading to sparse
models requiring considerably less storage and floating-point operations while
maintaining predictive performance. Model soups (Wortsman et al., 2022) improve
generalization and out-of-distribution performance by averaging the parameters
of multiple models into a single one without increased inference time. However,
identifying models in the same loss basin to leverage both sparsity and
parameter averaging is challenging, as averaging arbitrary sparse models
reduces the overall sparsity due to differing sparse connectivities. In this
work, we address these challenges by demonstrating that exploring a single
retraining phase of Iterative Magnitude Pruning (IMP) with varying
hyperparameter configurations, such as batch ordering or weight decay, produces
models that are suitable for averaging and share the same sparse connectivity
by design. Averaging these models significantly enhances generalization
performance compared to their individual components. Building on this idea, we
introduce Sparse Model Soups (SMS), a novel method for merging sparse models by
initiating each prune-retrain cycle with the averaged model of the previous
phase. SMS maintains sparsity, exploits sparse network benefits being modular
and fully parallelizable, and substantially improves IMP's performance.
Additionally, we demonstrate that SMS can be adapted to enhance the performance
of state-of-the-art pruning during training approaches.Comment: 9 pages, 5 pages references, 7 pages appendi
A systematic literature review on source code similarity measurement and clone detection: techniques, applications, and challenges
Measuring and evaluating source code similarity is a fundamental software
engineering activity that embraces a broad range of applications, including but
not limited to code recommendation, duplicate code, plagiarism, malware, and
smell detection. This paper proposes a systematic literature review and
meta-analysis on code similarity measurement and evaluation techniques to shed
light on the existing approaches and their characteristics in different
applications. We initially found over 10000 articles by querying four digital
libraries and ended up with 136 primary studies in the field. The studies were
classified according to their methodology, programming languages, datasets,
tools, and applications. A deep investigation reveals 80 software tools,
working with eight different techniques on five application domains. Nearly 49%
of the tools work on Java programs and 37% support C and C++, while there is no
support for many programming languages. A noteworthy point was the existence of
12 datasets related to source code similarity measurement and duplicate codes,
of which only eight datasets were publicly accessible. The lack of reliable
datasets, empirical evaluations, hybrid methods, and focuses on multi-paradigm
languages are the main challenges in the field. Emerging applications of code
similarity measurement concentrate on the development phase in addition to the
maintenance.Comment: 49 pages, 10 figures, 6 table
Design and Characterization of Crossbar architecture Velostat-based Flexible Writing Pad
Pressure sensors are popular in a large variety of industries. For some
applications, it is critical for these sensors to come in a flexible form
factor. With the development of new synthetic polymers and novel fabrication
techniques, flexible pressure sensing arrays are more easily accessible and can
serve a variety of applications. As part of this dissertation, we demonstrate
one such application of the same by developing a low-cost flexible writing pad
and doing crosstalk analysis on sensors with similar working principles. We
present a low-cost, flexible writing pad that uses a 16x16 pressure sensing
matrix based on the piezoresistive thin film of velostat. The writing area is 5
cm x 5 cm with an effective pixel area of 0.06 mm^2. A read-out circuit is
designed to detect the change in resistance of the velostat pixel using a
voltage divider. A microprocessor raster scans through the sensor pixel matrix
to obtain a data frame of 256 numbers. This data is processed using techniques
like squaring and normalising (S\&N), Gaussian blurring, and adaptive
thresholding to generate a more readable output. The writing pad is able to
resolve characters larger than 2 cm in length. The flexible writing pad
produces legible output while flexed at a bending radius of up to 4 cm. Such
flexibility promises to enhance the usability and portability of the writing
pad significantly. We noticed that the raw data produced by the writing pad had
a lot of crosstalk which we were subsequently able to resolve using the
algorithms mentioned above. Such crosstalk has been reported in literature
multiple times and is common, especially for sensors of the crossbar
architecture.Crosstalk, in a sensor matrix, is the unwanted signal obtained at
a sensor pixel that is not directly related to the stimulus. This paper
presents a novel approach towards quantifying the crosstalk characteristics of
a sensor matrix
The State of the Art in Deep Learning Applications, Challenges, and Future Prospects::A Comprehensive Review of Flood Forecasting and Management
Floods are a devastating natural calamity that may seriously harm both infrastructure and people. Accurate flood forecasts and control are essential to lessen these effects and safeguard populations. By utilizing its capacity to handle massive amounts of data and provide accurate forecasts, deep learning has emerged as a potent tool for improving flood prediction and control. The current state of deep learning applications in flood forecasting and management is thoroughly reviewed in this work. The review discusses a variety of subjects, such as the data sources utilized, the deep learning models used, and the assessment measures adopted to judge their efficacy. It assesses current approaches critically and points out their advantages and disadvantages. The article also examines challenges with data accessibility, the interpretability of deep learning models, and ethical considerations in flood prediction. The report also describes potential directions for deep-learning research to enhance flood predictions and control. Incorporating uncertainty estimates into forecasts, integrating many data sources, developing hybrid models that mix deep learning with other methodologies, and enhancing the interpretability of deep learning models are a few of these. These research goals can help deep learning models become more precise and effective, which will result in better flood control plans and forecasts. Overall, this review is a useful resource for academics and professionals working on the topic of flood forecasting and management. By reviewing the current state of the art, emphasizing difficulties, and outlining potential areas for future study, it lays a solid basis. Communities may better prepare for and lessen the destructive effects of floods by implementing cutting-edge deep learning algorithms, thereby protecting people and infrastructure
Beam scanning by liquid-crystal biasing in a modified SIW structure
A fixed-frequency beam-scanning 1D antenna based on Liquid Crystals (LCs) is designed for application in 2D scanning with lateral alignment. The 2D array environment imposes full decoupling of adjacent 1D antennas, which often conflicts with the LC requirement of DC biasing: the proposed design accommodates both. The LC medium is placed inside a Substrate Integrated Waveguide (SIW) modified to work as a Groove Gap Waveguide, with radiating slots etched on the upper broad wall, that radiates as a Leaky-Wave Antenna (LWA). This allows effective application of the DC bias voltage needed for tuning the LCs. At the same time, the RF field remains laterally confined, enabling the possibility to lay several antennas in parallel and achieve 2D beam scanning. The design is validated by simulation employing the actual properties of a commercial LC medium
Is attention all you need in medical image analysis? A review
Medical imaging is a key component in clinical diagnosis, treatment planning
and clinical trial design, accounting for almost 90% of all healthcare data.
CNNs achieved performance gains in medical image analysis (MIA) over the last
years. CNNs can efficiently model local pixel interactions and be trained on
small-scale MI data. The main disadvantage of typical CNN models is that they
ignore global pixel relationships within images, which limits their
generalisation ability to understand out-of-distribution data with different
'global' information. The recent progress of Artificial Intelligence gave rise
to Transformers, which can learn global relationships from data. However, full
Transformer models need to be trained on large-scale data and involve
tremendous computational complexity. Attention and Transformer compartments
(Transf/Attention) which can well maintain properties for modelling global
relationships, have been proposed as lighter alternatives of full Transformers.
Recently, there is an increasing trend to co-pollinate complementary
local-global properties from CNN and Transf/Attention architectures, which led
to a new era of hybrid models. The past years have witnessed substantial growth
in hybrid CNN-Transf/Attention models across diverse MIA problems. In this
systematic review, we survey existing hybrid CNN-Transf/Attention models,
review and unravel key architectural designs, analyse breakthroughs, and
evaluate current and future opportunities as well as challenges. We also
introduced a comprehensive analysis framework on generalisation opportunities
of scientific and clinical impact, based on which new data-driven domain
generalisation and adaptation methods can be stimulated
Using machine learning to predict pathogenicity of genomic variants throughout the human genome
Geschätzt mehr als 6.000 Erkrankungen werden durch Veränderungen im Genom verursacht. Ursachen gibt es viele: Eine genomische Variante kann die Translation eines Proteins stoppen, die Genregulation stören oder das Spleißen der mRNA in eine andere Isoform begünstigen. All diese Prozesse müssen überprüft werden, um die zum beschriebenen Phänotyp passende Variante zu ermitteln. Eine Automatisierung dieses Prozesses sind Varianteneffektmodelle. Mittels maschinellem Lernen und Annotationen aus verschiedenen Quellen bewerten diese Modelle genomische Varianten hinsichtlich ihrer Pathogenität.
Die Entwicklung eines Varianteneffektmodells erfordert eine Reihe von Schritten: Annotation der Trainingsdaten, Auswahl von Features, Training verschiedener Modelle und Selektion eines Modells. Hier präsentiere ich ein allgemeines Workflow dieses Prozesses. Dieses ermöglicht es den Prozess zu konfigurieren, Modellmerkmale zu bearbeiten, und verschiedene Annotationen zu testen. Der Workflow umfasst außerdem die Optimierung von Hyperparametern, Validierung und letztlich die Anwendung des Modells durch genomweites Berechnen von Varianten-Scores.
Der Workflow wird in der Entwicklung von Combined Annotation Dependent Depletion (CADD), einem Varianteneffektmodell zur genomweiten Bewertung von SNVs und InDels, verwendet. Durch Etablierung des ersten Varianteneffektmodells für das humane Referenzgenome GRCh38 demonstriere ich die gewonnenen Möglichkeiten Annotationen aufzugreifen und neue Modelle zu trainieren. Außerdem zeige ich, wie Deep-Learning-Scores als Feature in einem CADD-Modell die Vorhersage von RNA-Spleißing verbessern. Außerdem werden Varianteneffektmodelle aufgrund eines neuen, auf Allelhäufigkeit basierten, Trainingsdatensatz entwickelt.
Diese Ergebnisse zeigen, dass der entwickelte Workflow eine skalierbare und flexible Möglichkeit ist, um Varianteneffektmodelle zu entwickeln. Alle entstandenen Scores sind unter cadd.gs.washington.edu und cadd.bihealth.org frei verfügbar.More than 6,000 diseases are estimated to be caused by genomic variants. This can happen in many possible ways: a variant may stop the translation of a protein, interfere with gene regulation, or alter splicing of the transcribed mRNA into an unwanted isoform. It is necessary to investigate all of these processes in order to evaluate which variant may be causal for the deleterious phenotype. A great help in this regard are variant effect scores. Implemented as machine learning classifiers, they integrate annotations from different resources to rank genomic variants in terms of pathogenicity.
Developing a variant effect score requires multiple steps: annotation of the training data, feature selection, model training, benchmarking, and finally deployment for the model's application. Here, I present a generalized workflow of this process. It makes it simple to configure how information is converted into model features, enabling the rapid exploration of different annotations. The workflow further implements hyperparameter optimization, model validation and ultimately deployment of a selected model via genome-wide scoring of genomic variants.
The workflow is applied to train Combined Annotation Dependent Depletion (CADD), a variant effect model that is scoring SNVs and InDels genome-wide. I show that the workflow can be quickly adapted to novel annotations by porting CADD to the genome reference GRCh38. Further, I demonstrate the integration of deep-neural network scores as features into a new CADD model, improving the annotation of RNA splicing events. Finally, I apply the workflow to train multiple variant effect models from training data that is based on variants selected by allele frequency.
In conclusion, the developed workflow presents a flexible and scalable method to train variant effect scores. All software and developed scores are freely available from cadd.gs.washington.edu and cadd.bihealth.org
Introduction to Facial Micro Expressions Analysis Using Color and Depth Images: A Matlab Coding Approach (Second Edition, 2023)
The book attempts to introduce a gentle introduction to the field of Facial
Micro Expressions Recognition (FMER) using Color and Depth images, with the aid
of MATLAB programming environment. FMER is a subset of image processing and it
is a multidisciplinary topic to analysis. So, it requires familiarity with
other topics of Artifactual Intelligence (AI) such as machine learning, digital
image processing, psychology and more. So, it is a great opportunity to write a
book which covers all of these topics for beginner to professional readers in
the field of AI and even without having background of AI. Our goal is to
provide a standalone introduction in the field of MFER analysis in the form of
theorical descriptions for readers with no background in image processing with
reproducible Matlab practical examples. Also, we describe any basic definitions
for FMER analysis and MATLAB library which is used in the text, that helps
final reader to apply the experiments in the real-world applications. We
believe that this book is suitable for students, researchers, and professionals
alike, who need to develop practical skills, along with a basic understanding
of the field. We expect that, after reading this book, the reader feels
comfortable with different key stages such as color and depth image processing,
color and depth image representation, classification, machine learning, facial
micro-expressions recognition, feature extraction and dimensionality reduction.
The book attempts to introduce a gentle introduction to the field of Facial
Micro Expressions Recognition (FMER) using Color and Depth images, with the aid
of MATLAB programming environment.Comment: This is the second edition of the boo
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