23,230 research outputs found
A Survey on Deep Learning in Medical Image Analysis
Deep learning algorithms, in particular convolutional networks, have rapidly
become a methodology of choice for analyzing medical images. This paper reviews
the major deep learning concepts pertinent to medical image analysis and
summarizes over 300 contributions to the field, most of which appeared in the
last year. We survey the use of deep learning for image classification, object
detection, segmentation, registration, and other tasks and provide concise
overviews of studies per application area. Open challenges and directions for
future research are discussed.Comment: Revised survey includes expanded discussion section and reworked
introductory section on common deep architectures. Added missed papers from
before Feb 1st 201
Visual Quality Enhancement in Optoacoustic Tomography using Active Contour Segmentation Priors
Segmentation of biomedical images is essential for studying and
characterizing anatomical structures, detection and evaluation of pathological
tissues. Segmentation has been further shown to enhance the reconstruction
performance in many tomographic imaging modalities by accounting for
heterogeneities of the excitation field and tissue properties in the imaged
region. This is particularly relevant in optoacoustic tomography, where
discontinuities in the optical and acoustic tissue properties, if not properly
accounted for, may result in deterioration of the imaging performance.
Efficient segmentation of optoacoustic images is often hampered by the
relatively low intrinsic contrast of large anatomical structures, which is
further impaired by the limited angular coverage of some commonly employed
tomographic imaging configurations. Herein, we analyze the performance of
active contour models for boundary segmentation in cross-sectional optoacoustic
tomography. The segmented mask is employed to construct a two compartment model
for the acoustic and optical parameters of the imaged tissues, which is
subsequently used to improve accuracy of the image reconstruction routines. The
performance of the suggested segmentation and modeling approach are showcased
in tissue-mimicking phantoms and small animal imaging experiments.Comment: Accepted for publication in IEEE Transactions on Medical Imagin
Improvements to context based self-supervised learning
We develop a set of methods to improve on the results of self-supervised
learning using context. We start with a baseline of patch based arrangement
context learning and go from there. Our methods address some overt problems
such as chromatic aberration as well as other potential problems such as
spatial skew and mid-level feature neglect. We prevent problems with testing
generalization on common self-supervised benchmark tests by using different
datasets during our development. The results of our methods combined yield top
scores on all standard self-supervised benchmarks, including classification and
detection on PASCAL VOC 2007, segmentation on PASCAL VOC 2012, and "linear
tests" on the ImageNet and CSAIL Places datasets. We obtain an improvement over
our baseline method of between 4.0 to 7.1 percentage points on transfer
learning classification tests. We also show results on different standard
network architectures to demonstrate generalization as well as portability. All
data, models and programs are available at:
https://gdo-datasci.llnl.gov/selfsupervised/.Comment: Accepted paper at CVPR 201
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